Compare commits
9 Commits
| Author | SHA1 | Date | |
|---|---|---|---|
| 5f7dc3b6c0 | |||
| 6c44e50a24 | |||
| 57996189ac | |||
| 29e5708959 | |||
| 5c3de59b58 | |||
| e5381d0e70 | |||
| b644de428b | |||
| d4d02ee814 | |||
| b2a6efc5a6 |
+32
-1
@@ -113,6 +113,25 @@ python3 -B -m paper_atlas catalogue dblp \
|
||||
|
||||
`dblp-catalogue.sqlite` 保存论文集目录、按 crossref/年份/booktitle 的记录数量、各目录族数量及少量样本;`dblp-ai-candidates.jsonl` 保存候选会议族的原始索引元数据。存在多个出版卷字段的记录另存 `volume_anomalies`,保留全部值供归属核验;统计中仍只计一条,不任取第一个字段或展开成多篇。候选范围包含历史名称与 workshop,尚未赋予主会归属或录用状态。后续须依据具体论文集和届次核对目标范围、track 与出版标识,才能生成入库文件;不会把同一目录下的所有记录都视为主会。该盘点不下载 PDF,也不更改论文主库。
|
||||
|
||||
目录盘点完成后,可按已核对的书目名称整理指定会议的分届文件。例如先补齐尚无主库记录的会议:
|
||||
|
||||
```sh
|
||||
paper-atlas collect dblp \
|
||||
--catalogue /data/paper-index/collected/dblp/dblp-catalogue.sqlite \
|
||||
--archive /data/paper-index/raw/dblp-2026-11-01.xml.gz \
|
||||
--dtd /data/paper-index/raw/dblp-2023-06-28.dtd \
|
||||
--venue AAAI --venue IJCAI --venue KDD \
|
||||
--out /data/paper-index/collected/dblp-normalized
|
||||
```
|
||||
|
||||
也可用 `--candidates` 指定已通过清单 SHA-256 核验的候选文件;完整 XML 模式则可包含初次候选族之外的实际目录,例如 CLeaR 的 `clear2`。规则按书目名、crossref 论文集和会议年核对:不把另一个 `CLEAR` 或 Adaptive Agents 会议误标为 CLeaR/AAMAS;联合会议保留名称别名,出版年与会议年分别保存。workshop 默认单独留待审核,可显式使用 `--include-workshops`;其他已识别的官方附属 track 单列。
|
||||
|
||||
输出按会议/年份/track 分文件,附 manifest、`dblp-normalization.json` 范围审查统计和带哈希的 `dblp-import-queue.json`。不能识别的书目、年份或归属会逐类登记,不默认算作主会。DBLP 不含摘要,因此输出摘要为空、清单为 partial;需要通过有证据的跨来源关联补齐论文实体摘要。书目发表证据与原始审稿决定分别保留,不依据书目缺席推断拒稿。已存在其他出版来源的届次,还须先回填其权威身份并核验镜像记录,不能直接累加投稿数。
|
||||
|
||||
部分早期 SIGIR、CIKM、IJCAI 出版卷使用两位年份键;只有论文集标题明确给出唯一完整年份且与短键相符时才采用,不推测世纪。WWW 特殊兴趣、Alternate track 单列;同卷混合 Applied Data Science、Demo、Industrial 且不能逐篇区分时使用 `proceedings_unspecified`,不把整卷归为某一个具体 track。
|
||||
|
||||
书目中的前后页、目录组合和明确会务标题不产生论文录用记录;缺作者的赞助、委员会、活动汇总等标题单独排除。WWW 2019 companion 的匿名合成活动条目归入待核查材料,原始快照仍保留。范围报告分别统计这些原因;单纯缺作者并不排除真实研究论文,也不补造作者。
|
||||
|
||||
XML 只允许校验过的本地 DTD;官方通用名 `dblp.dtd` 与月度快照使用的 `dblp-2023-06-28.dtd` 均解析到同一份已校验文件。拒绝其他外部实体和内部 DTD 子集,不访问 XML 声明的任意网络地址,并遵循源 XML 的字符编码。临时目录库或 gzip 检查失败时不发布正式候选文件,需先调查残留的 `.part` 状态,再决定是否重新运行。
|
||||
|
||||
公开 ICLR 投稿快照的固定 Release 供后续筛选投稿和明确决定;它是第三方保存的 OpenReview 历史副本,不等于最新官方全量数据:
|
||||
@@ -215,8 +234,20 @@ python3 -B -m paper_atlas collect ecva \
|
||||
--cache /data/paper-index/raw/http-cache --out /data/paper-index/collected
|
||||
```
|
||||
|
||||
CVF 从官方根目录发现 CVPR、ICCV 主会与 Findings,分别保存 track;不把 workshop 或 WACV 算入这些会议。优先跟随页面明确提供的 All Papers 链接,避免只收录默认显示的第一天。ECVA 从官方总目录按论文 URL 的会议与年份分组,当前总目录列有 ECCV 2018、2020、2022、2024。不存在于来源的 `--venue`、`--year` 或二者组合会报错,不补造双年会议届次,也不能因此推断旧届次未举办。
|
||||
CVF 从官方根目录发现 CVPR、ICCV 主会与 Findings,分别保存 track;不把 workshop 或 WACV 算入这些会议。优先跟随页面明确提供的 All Papers 链接;只有逐日目录时遍历全部明确链接的日期,再按论文 URL 合并重复条目并检查标题、作者、DOI 一致性。`.py` 与无后缀的同届入口可关联,不跟随其他会议、年份或站点的日期链接。ECVA 从官方总目录按论文 URL 的会议与年份分组,当前总目录列有 ECCV 2018、2020、2022、2024。不存在于来源的 `--venue`、`--year` 或二者组合会报错,不补造双年会议届次,也不能因此推断旧届次未举办。
|
||||
|
||||
只访问论文索引与摘要 HTML/PHP 页面。作者优先取 citation 元数据,旧页面尊重声明编码;无 citation 作者时取索引中的作者行,排除论文集出版信息。DOI 只取该论文条目所属的 DOI 链接或 citation 字段;冲突会失败,不从摘要引用中抽取当前论文 ID。不请求 PDF、补充材料、视频或代码。
|
||||
|
||||
每份清单记录索引入口数、论文数、缺失摘要与作者数,缺失内容保留为空并标记 partial。存在未被标题条目解析的论文链接时会失败,防止静默漏项。逐来源的 discovery、index-status、last-run 文件分别保存发现目录、逐届结果和实际请求范围。可重复使用 `--year` 或 `--venue` 限定重试;其他届次状态会保留。官方开放目录之外的早期届次、尚未刊出的新届次和独立出版方历史数据仍需后续补齐,采集器完成不代表全历史覆盖已完成。
|
||||
|
||||
单个摘要页面 404 时,仍保存官方目录提供的题目、作者和发表证据,摘要留空并记录失败 URL;整届文件标为 partial。403 等访问拒绝会终止该届采集。刷新缺失摘要时,存储层保留原来已知的论文摘要及其来源观察信息,后续页面恢复时可以更新。
|
||||
|
||||
针对旧 catalogue 的 blocked 届次可单独补采到新目录,避免与现有采集任务同时改写状态文件:
|
||||
|
||||
```sh
|
||||
paper-atlas collect cvf --cache /data/paper-index/raw/http-cache \
|
||||
--retry-catalogue /data/paper-index/collected/cvf-index-status.json \
|
||||
--out /data/paper-index/collected/cvf-repair
|
||||
```
|
||||
|
||||
parser_version 2 的清单还保存实际遍历的 index_urls、入口错误及缺失摘要页面。补采结果经过清单与身份核验后才导入,不能因重试任务启动就标记缺口已解决。
|
||||
|
||||
@@ -42,4 +42,13 @@ paper-atlas coverage --db /data/paper-index/papers.sqlite --out /data/paper-inde
|
||||
|
||||
`--status rejected` 筛选某次投稿的最新已知决定。它并不表示论文在所有会议均未录用;分析转投情况时查看该论文的完整投稿历史。年份表示会议届次,观察时间和决定日期分别保留。
|
||||
|
||||
例如,查找在 ICLR 有拒稿记录、但在其他已知投稿中已有录用的论文:
|
||||
|
||||
```sh
|
||||
paper-atlas query --db /data/paper-index/papers.sqlite \\
|
||||
--venue ICLR --status rejected --outcome accepted
|
||||
```
|
||||
|
||||
`known_acceptances` 列出目前仍为录用状态的各次投稿及会议、年份、track 和决定证据,`publication_outcome` 汇总为 accepted 或 no_known_acceptance。汇总会检查所有会议和 track,不把某次拒稿覆盖到整篇论文;同一次投稿的后续撤稿也会更新该次状态并保留原决定。no_known_acceptance 只表示现有来源中没有查到录用,不能称为“从未录用”。
|
||||
|
||||
`--stats` 中 papers 是当前规则下的论文实体数;source_records 是来源记录数;decisions 是决定观察数。一个投稿可能有多个来源和多条观察,不能相加当作论文数。
|
||||
|
||||
@@ -18,6 +18,7 @@ COMMANDS = {
|
||||
('collect','neurips'): ('paper_atlas.collectors.proceedings', {'source':'neurips'}, 'NeurIPS 官方论文集'),
|
||||
('collect','cvf'): ('paper_atlas.collectors.vision', {'source':'cvf'}, 'CVPR / ICCV 官方开放目录'),
|
||||
('collect','ecva'): ('paper_atlas.collectors.vision', {'source':'ecva'}, 'ECCV 官方开放目录'),
|
||||
('collect','dblp'): ('paper_atlas.collectors.dblp_records', {}, '核对并整理 DBLP 历史发表记录'),
|
||||
('catalogue','dblp'): ('paper_atlas.collectors.dblp', {}, '盘点 DBLP 历史会议目录'),
|
||||
('import','arxiv'): ('paper_atlas.ingestion.arxiv', {}, '导入 arXiv 元数据 ZIP'),
|
||||
('import','records'): ('paper_atlas.ingestion.records', {}, '导入核验过的会议文件'),
|
||||
|
||||
@@ -0,0 +1,186 @@
|
||||
"""Normalize pinned DBLP publication metadata into audited edition files."""
|
||||
import argparse
|
||||
from collections import Counter,OrderedDict
|
||||
from contextlib import closing
|
||||
import fcntl
|
||||
import hashlib
|
||||
import json
|
||||
from pathlib import Path
|
||||
import re
|
||||
import shutil
|
||||
import sqlite3
|
||||
import tempfile
|
||||
from urllib.parse import parse_qs,unquote,urlsplit
|
||||
|
||||
from paper_atlas.config import DEFAULT_REGISTRY
|
||||
from paper_atlas.collectors.dblp import XML_SHA,DTD_MD5,RELEASE,records
|
||||
from paper_atlas.collectors.dblp_scope import scope
|
||||
from paper_atlas.db.submissions import timestamp
|
||||
from paper_atlas.io.snapshots import digest_file
|
||||
|
||||
AS_OF='2026-11-01T00:00:00.000Z'
|
||||
MATERIAL_PART=r'(?:title(?: page)?|preface|foreword|editorial|front\s?matter|back\s?matter|(?:table of )?contents|(?:author |subject )?index|contributors|(?:conference |program |organizing |steering )?committee|conference organization|reviewers)'
|
||||
FRONTMATTER=re.compile(MATERIAL_PART+r'(?:\s*[,;&]\s*'+MATERIAL_PART+r')*[.!:]?',re.I)
|
||||
HEADINGS=re.compile(r'(?:(?:IJCAI|AAAI)(?:[- ]\d{2,4})? |(?:19|20)\d{2} )?(?:conference )?(?:organization|organizers and sponsors|sponsorship|sponsors|(?:non-PC )?reviewers|awards and distinguished papers|keynote and invited speakers|area chairs and program committee|tutorials|panel session|invited talks|workshops|workshop summaries|special track on continuous planning)[.!:]?',re.I)
|
||||
|
||||
|
||||
def material_reason(title,authors,key,year,track):
|
||||
if FRONTMATTER.fullmatch(title):return 'frontmatter'
|
||||
if re.search(r"\bchairs['’]? welcome(?:\s*&\s*organization listing)?[.!:]?$",title,re.I):return 'frontmatter'
|
||||
if not authors:
|
||||
if HEADINGS.fullmatch(title) or re.fullmatch(r'(?:past IJCAI conferences|events colocated with IJCAI-\d{2}|welcome message from the conference chairs|welcome to (?:ICDM|IJCAI|AAAI) \d{4})[.!:]?',title,re.I):return 'proceedings_heading'
|
||||
# These anonymous synthetic entries name whole workshop events, rather
|
||||
# than identifiable papers. Hold them without discarding the raw source.
|
||||
if year==2019 and track=='companion' and re.fullmatch(r'conf/www/X19[a-z]?',key):return 'unverified_proceedings_material'
|
||||
return None
|
||||
|
||||
|
||||
def identifiers(fields):
|
||||
dois=set();arxiv=set();forums=set()
|
||||
for link in fields.get('ee',[]):
|
||||
parsed=urlsplit(link);path=unquote(parsed.path)
|
||||
doi=None
|
||||
if parsed.netloc in ('doi.org','dx.doi.org','doi.ieeecomputersociety.org'):doi=path.lstrip('/')
|
||||
elif parsed.netloc=='link.springer.com' and path.startswith('/chapter/'):doi=path.removeprefix('/chapter/')
|
||||
elif parsed.netloc=='dl.acm.org':
|
||||
match=re.match(r'/doi/(?:abs/|full/|pdf/)?(10\..+)',path)
|
||||
if match:doi=match[1]
|
||||
if doi and re.fullmatch(r'10\.\d{4,9}/\S+',doi):dois.add(doi.lower())
|
||||
if parsed.netloc in ('arxiv.org','www.arxiv.org'):
|
||||
match=re.fullmatch(r'/(?:abs|pdf)/((?:\d{4}\.\d{4,5}|[a-zA-Z.-]+/\d{7})(?:v\d+)?)(?:\.pdf)?',path)
|
||||
if match:arxiv.add(re.sub(r'v\d+$','',match[1]))
|
||||
if parsed.netloc=='openreview.net' and parsed.path in ('/forum','/pdf'):
|
||||
values=parse_qs(parsed.query).get('id',[])
|
||||
if len(values)==1 and re.fullmatch(r'[A-Za-z0-9_-]+',values[0]) and not re.match(r'20\d{2}-Oral-',values[0]):forums.add(values[0])
|
||||
for doi in dois:
|
||||
match=re.fullmatch(r'10\.48550/arxiv\.((?:\d{4}\.\d{4,5}|[a-z.-]+/\d{7})(?:v\d+)?)',doi)
|
||||
if match:arxiv.add(re.sub(r'v\d+$','',match[1]))
|
||||
publications={doi for doi in dois if not doi.startswith('10.48550/arxiv.')}
|
||||
own={}
|
||||
for scheme,values in (('doi',publications),('arxiv',arxiv),('openreview',forums)):
|
||||
if len(values)==1:own[scheme]=next(iter(values))
|
||||
ambiguous={scheme:sorted(values) for scheme,values in (('doi',publications),('arxiv',arxiv),('openreview',forums)) if len(values)>1}
|
||||
return own,ambiguous
|
||||
|
||||
|
||||
def normalize_row(row,volumes,targets,include_workshops=False,through_year=2026):
|
||||
if row['record_type']!='inproceedings':return None,'not_a_paper'
|
||||
fields=row['fields'];refs=fields.get('crossref',[])
|
||||
if len(refs)!=1:return None,'ambiguous_or_missing_crossref'
|
||||
edition,reason=scope(row,volumes.get(refs[0]),through_year)
|
||||
if not edition:return None,reason
|
||||
if not ({edition['venue']}|set(edition['venue_aliases']))&targets:return None,'outside_requested_venues'
|
||||
if edition['track']=='workshop' and not include_workshops:return None,'separate_workshop'
|
||||
titles=fields.get('title',[])
|
||||
if len(titles)!=1 or not titles[0].strip():return None,'missing_or_multiple_titles'
|
||||
title=' '.join(titles[0].split())
|
||||
authors=[re.sub(r'\s+\d{4}$','',name).strip() for name in fields.get('author',[]) if name.strip()]
|
||||
reason=material_reason(title,authors,row['key'],edition['year'],edition['track'])
|
||||
if reason:return None,reason
|
||||
own,ambiguous=identifiers(fields)
|
||||
metadata={'snapshot_sha256':XML_SHA,'snapshot_release':RELEASE,'observation_date_precision':'day',
|
||||
'proceedings_key':refs[0],'proceedings_title':edition['proceedings_title'],'bibliographic_year':edition['bibliographic_year'],
|
||||
'edition_year_basis':edition['edition_year_basis'],
|
||||
'scope_rule':edition['rule'],'author_names_raw':fields.get('author',[]),'publtype':row.get('publtype'),
|
||||
'bibliography':{key:value for key,value in fields.items() if key in ('booktitle','year','ee','url','pages','volume','number','publisher','series','isbn')},
|
||||
'ambiguous_identifiers':ambiguous,'publication_evidence':'inproceedings bibliography; not an original decision note'}
|
||||
flagged=bool(re.search(r'\b(?:withdrawn|retracted)\b',row.get('publtype') or '',re.I))
|
||||
result={'source':'dblp','external_id':row['key'],'url':'https://dblp.org/rec/'+row['key']+'.html',
|
||||
'title':title,'abstract':None,'authors':authors,'identifiers':own,
|
||||
**{key:edition[key] for key in ('venue','venue_aliases','year','track')},
|
||||
'status':'unknown' if flagged else 'accepted','observed_at':AS_OF,
|
||||
'raw_decision':'listed in pinned DBLP inproceedings bibliography','metadata':metadata,
|
||||
'tags':[{'namespace':'dblp:booktitle','value':fields['booktitle'][0]}]}
|
||||
if flagged:result['decision_events']=[]
|
||||
return result,None
|
||||
|
||||
|
||||
def collect(catalogue,out,venues=None,candidates=None,archive=None,dtd=None,include_workshops=False,through_year=2026):
|
||||
if bool(candidates)==bool(archive):raise ValueError('Choose exactly one candidates file or original archive')
|
||||
catalogue=Path(catalogue);manifest=json.loads(catalogue.with_name('dblp-ai-candidates.manifest.json').read_text())
|
||||
if manifest['snapshot_sha256']!=XML_SHA:raise ValueError('Unsupported snapshot identity')
|
||||
if candidates:
|
||||
if digest_file(Path(candidates))['sha256']!=manifest['candidate_sha256']:raise ValueError('Candidate checksum mismatch')
|
||||
else:
|
||||
if not dtd or digest_file(Path(dtd))['md5']!=DTD_MD5:raise ValueError('DTD checksum mismatch')
|
||||
if digest_file(Path(archive))['sha256']!=XML_SHA:raise ValueError('Archive checksum mismatch')
|
||||
with closing(sqlite3.connect(catalogue.resolve().as_uri()+'?mode=ro',uri=True)) as c:
|
||||
volumes={key:json.loads(payload) for key,payload in c.execute('SELECT key,metadata_json FROM proceedings')}
|
||||
if len(volumes)!=manifest['record_types']['proceedings']:raise ValueError('Catalogue inventory mismatch')
|
||||
allowed={row['acronym'].casefold():row['acronym'] for row in json.loads(DEFAULT_REGISTRY.read_text())['venues']}
|
||||
if venues and set(name.casefold() for name in venues)-allowed.keys():raise ValueError('Unknown registry venue')
|
||||
targets={allowed[name.casefold()] for name in venues} if venues else set(allowed.values())
|
||||
out=Path(out);out.mkdir(parents=True,exist_ok=True)
|
||||
with (out/'dblp.normalize.lock').open('a') as lock:
|
||||
fcntl.flock(lock,fcntl.LOCK_EX|fcntl.LOCK_NB)
|
||||
return _collect_rows(volumes,out,targets,candidates,archive,dtd,include_workshops,through_year,manifest)
|
||||
|
||||
|
||||
def _collect_rows(volumes,out,targets,candidates,archive,dtd,include_workshops,through_year,source_manifest):
|
||||
counts=Counter();excluded=Counter();examples={};groups={};seen=set();handles=OrderedDict();scanned=0
|
||||
def rows():
|
||||
if candidates:
|
||||
with Path(candidates).open() as stream:
|
||||
for line in stream:yield json.loads(line)
|
||||
else:yield from records(archive,Path(dtd).read_bytes())
|
||||
if shutil.disk_usage(out).free<8*1024**3:raise RuntimeError('Less than 8 GiB free before normalization')
|
||||
with tempfile.TemporaryDirectory(prefix='.dblp-normalize-',dir=out) as temporary:
|
||||
stage=Path(temporary)
|
||||
try:
|
||||
for row in rows():
|
||||
scanned+=1
|
||||
record,reason=normalize_row(row,volumes,targets,include_workshops,through_year)
|
||||
if record is None:
|
||||
excluded[reason]+=1
|
||||
label=reason+'|'+'/'.join(row.get('key','').split('/')[:2])+'|'+';'.join(row['fields'].get('booktitle',[]))
|
||||
if label not in examples:examples[label]={'count':0,'example_key':row.get('key')}
|
||||
examples[label]['count']+=1
|
||||
else:
|
||||
key=record['external_id']
|
||||
if key in seen:raise ValueError('Repeated DBLP publication key')
|
||||
seen.add(key);group=(record['venue'],record['year'],record['track'])
|
||||
filename='dblp-'+re.sub(r'[^a-z0-9]+','-',group[0].casefold())+'-'+str(group[1])+'-'+group[2]+'.jsonl'
|
||||
if group not in groups:groups[group]={'filename':filename,'count':0,'unknown':0,'ambiguous_identifiers':0}
|
||||
info=groups[group];info['count']+=1;info['unknown']+=record['status']=='unknown';info['ambiguous_identifiers']+=bool(record['metadata']['ambiguous_identifiers'])
|
||||
if group not in handles:
|
||||
if len(handles)>=32:handles.popitem(last=False)[1].close()
|
||||
handles[group]=(stage/filename).open('a')
|
||||
handles.move_to_end(group);handles[group].write(json.dumps(record,ensure_ascii=False)+'\n');counts[record['venue']]+=1
|
||||
if scanned%50000==0:
|
||||
if shutil.disk_usage(out).free<8*1024**3:raise RuntimeError('Less than 8 GiB free during normalization')
|
||||
print(json.dumps({'source':'dblp','scanned':scanned,'normalized':sum(counts.values())}),flush=True)
|
||||
finally:
|
||||
for handle in handles.values():handle.close()
|
||||
expected=source_manifest['candidate_records'] if candidates else sum(source_manifest['record_types'].values())
|
||||
if scanned!=expected:raise ValueError('Input count differs from verified catalogue')
|
||||
if not seen:raise ValueError('No target publications were verified')
|
||||
files=[]
|
||||
for (venue,year,track),info in sorted(groups.items()):
|
||||
path=out/info['filename'];checksum=digest_file(stage/info['filename'])['sha256']
|
||||
item={'source':'dblp','parser_version':1,'venue':venue,'year':year,'track':track,'count':info['count'],
|
||||
'missing_abstract_count':info['count'],'unknown_status_count':info['unknown'],'ambiguous_identifier_count':info['ambiguous_identifiers'],
|
||||
'list_url':RELEASE,'status':'partial','file':str(path),'file_sha256':checksum,'snapshot_sha256':XML_SHA,
|
||||
'abstract_note':'DBLP provides no abstract; canonical abstracts must come from independently linked sources.'}
|
||||
(stage/info['filename']).replace(path)
|
||||
meta=path.with_suffix('.manifest.json');part=meta.with_suffix('.part');part.write_text(json.dumps(item,indent=2));part.replace(meta);files.append(item)
|
||||
result={'source':'dblp','finished_at':timestamp(),'snapshot_sha256':XML_SHA,'input_mode':'candidates' if candidates else 'original_archive',
|
||||
'requested_venues':sorted(targets),'include_workshops':include_workshops,'through_year':through_year,'scanned_records':scanned,
|
||||
'normalized_records':len(seen),'records_by_venue':dict(counts),'excluded_by_reason':dict(excluded),'scope_review':examples,'files':files,
|
||||
'input_candidate_sha256':source_manifest['candidate_sha256'] if candidates else None,
|
||||
'note':'Classification covers requested recognizable bibliography entries, not an independent proof of complete venue histories. Unknown scopes remain in scope_review.'}
|
||||
target=out/'dblp-normalization.json';part=target.with_suffix('.part');part.write_text(json.dumps(result,ensure_ascii=False,indent=2));part.replace(target)
|
||||
queue={'files':[item['file'] for item in files],'file_sha256':{item['file']:item['file_sha256'] for item in files}}
|
||||
target=out/'dblp-import-queue.json';part=target.with_suffix('.part');part.write_text(json.dumps(queue,indent=2));part.replace(target)
|
||||
print(json.dumps({key:result[key] for key in ('scanned_records','normalized_records','records_by_venue','excluded_by_reason')}),flush=True)
|
||||
return result
|
||||
|
||||
|
||||
def main(argv=None,*,prog=None):
|
||||
parser=argparse.ArgumentParser(prog=prog);parser.add_argument('--catalogue',required=True);parser.add_argument('--out',required=True)
|
||||
inputs=parser.add_mutually_exclusive_group(required=True);inputs.add_argument('--candidates');inputs.add_argument('--archive')
|
||||
parser.add_argument('--dtd');parser.add_argument('--venue',action='append');parser.add_argument('--include-workshops',action='store_true')
|
||||
parser.add_argument('--through-year',type=int,default=2026);args=parser.parse_args(argv)
|
||||
collect(args.catalogue,args.out,args.venue,args.candidates,args.archive,args.dtd,args.include_workshops,args.through_year)
|
||||
|
||||
|
||||
if __name__=='__main__':main()
|
||||
@@ -0,0 +1,96 @@
|
||||
"""Explicit bibliographic aliases; a directory family alone is not venue evidence."""
|
||||
import re
|
||||
|
||||
|
||||
# Ordered long/joint names precede their shorter forms.
|
||||
BOOKS = {
|
||||
'aaai': [('AAAI/IAAI','AAAI+IAAI',['AAAI','IAAI']),('AAAI','AAAI',[])],
|
||||
'ijcai': [('IJCAI/ECAI','ECAI+IJCAI',['ECAI','IJCAI']),('IJCAI','IJCAI',[])],
|
||||
'ecai': [('ECAI','ECAI',[]),('AISB/GI (ECAI)','ECAI',[]),('AISB (ECAI)','ECAI',[])],
|
||||
'nips': [('NeurIPS Datasets and Benchmarks','NeurIPS',[]),('NeurIPS','NeurIPS',[]),('NIPS','NeurIPS',[])],
|
||||
'icml': [('ICML','ICML',[]),('ML','ICML',[])], 'iclr':[('ICLR','ICLR',[])],
|
||||
'colm':[('COLM','COLM',[])], 'colt':[('COLT/EuroCOLT','COLT',[]),('COLT','COLT',[])],
|
||||
'aistats':[('AISTATS','AISTATS',[])], 'uai':[('UAI','UAI',[])],
|
||||
'clear2':[('CLeaR','CLeaR',[])],
|
||||
'acl':[('COLING-ACL','ACL+COLING',['ACL','COLING']),('ACL/IJCNLP','ACL',[]),('ACL','ACL',[])],
|
||||
'emnlp':[('EMNLP-CoNLL','CoNLL+EMNLP',['CoNLL','EMNLP']),('EMNLP/IJCNLP','EMNLP',[]),('EMNLP','EMNLP',[])],
|
||||
'naacl':[('HLT/EMNLP','EMNLP',[]),('NAACL-HLT','NAACL',[]),('HLT-NAACL','NAACL',[]),('NAACL','NAACL',[]),('HLT','NAACL',[])],
|
||||
'eacl':[('EACL','EACL',[])],
|
||||
'coling':[('LREC/COLING','COLING+LREC',['COLING','LREC']),('COLING-ACL','ACL+COLING',['ACL','COLING']),('COLING','COLING',[])],
|
||||
'lrec':[('LREC/COLING','COLING+LREC',['COLING','LREC'])],
|
||||
'conll':[('CoNLL/LLL','CoNLL',[]),('CoNLL','CoNLL',[])],
|
||||
'cvpr':[('CVPR','CVPR',[])], 'iccv':[('ICCVW','ICCV',[]),('ICCV','ICCV',[])],
|
||||
'eccv':[('ECCV','ECCV',[])], 'kdd':[('KDD','KDD',[])], 'sigir':[('SIGIR','SIGIR',[])],
|
||||
'www':[('WWW','WWW',[])], 'wsdm':[('WSDM','WSDM',[])], 'recsys':[('RecSys','RecSys',[])],
|
||||
'cikm':[('CIKM','CIKM',[])], 'icdm':[('ICDM','ICDM',[])], 'sdm':[('SDM','SDM',[])],
|
||||
'ecml':[('ECML','ECML',['ECML-PKDD']),('EWSL','EWSL',['ECML-PKDD'])],
|
||||
'pkdd':[('ECML/PKDD','ECML-PKDD',[]),('ECML PKDD','ECML-PKDD',[]),('PKDD','PKDD',['ECML-PKDD'])],
|
||||
'icra':[('ICRA','ICRA',[])], 'iros':[('IROS','IROS',[])],
|
||||
'rss':[('Robotics: Science and Systems','RSS',[])], 'corl':[('CoRL','CoRL',[])],
|
||||
'aips':[('ICAPS','ICAPS',[]),('AIPS','AIPS',['ICAPS'])], 'icaps':[('ICAPS','ICAPS',[])],
|
||||
'kr':[('KR','KR',[])], 'atal':[('AAMAS','AAMAS',[])],
|
||||
'icassp':[('ICASSP','ICASSP',[])],
|
||||
'interspeech':[('INTERSPEECH','INTERSPEECH',[]),('EUROSPEECH','EUROSPEECH',['INTERSPEECH']),('ICSLP','ICSLP',['INTERSPEECH']),('ECST','ECST',['INTERSPEECH'])],
|
||||
'ismir':[('ISMIR','ISMIR',[])], 'miccai':[('MICCAI','MICCAI',[])],
|
||||
'fat':[('FAccT','FAccT',[]),('FAT*','FAccT',[]),('FAT','FAccT',[])],
|
||||
}
|
||||
|
||||
|
||||
def scope(row,volume,through_year=2026):
|
||||
fields=row['fields'];books=fields.get('booktitle',[])
|
||||
if len(books)!=1:return None,'ambiguous_booktitle'
|
||||
book=books[0];key=row.get('key','');parts=key.split('/')
|
||||
family=parts[1] if len(parts)>=3 and parts[0]=='conf' else ''
|
||||
if family not in BOOKS:return None,'outside_target_family'
|
||||
if not volume:return None,'missing_proceedings'
|
||||
title=' '.join(volume['fields'].get('title',[]))
|
||||
if family=='clear2' and 'causal learning and reasoning' not in title.casefold():return None,'ambiguous_venue_name'
|
||||
matched=None
|
||||
for base,venue,aliases in BOOKS[family]:
|
||||
match=re.fullmatch(re.escape(base)+r'(?:\s+\((.*)\)|\s+(.*)|,\s*(Vol\.\s*\d+))?',book,re.I)
|
||||
if match:
|
||||
matched=(base,venue,aliases,' '.join(value for value in match.groups() if value));break
|
||||
if not matched:return None,'unclassified_booktitle'
|
||||
base,venue,aliases,suffix=matched
|
||||
volume_family=volume['key'].split('/')[1] if volume['key'].startswith('conf/') else ''
|
||||
if volume_family!=family and not any(item[1]==venue for item in BOOKS.get(volume_family,[])):
|
||||
return None,'crossref_venue_conflict'
|
||||
year_match=re.match(r'conf/[^/]+/((?:19|20)\d{2})',volume['key'])
|
||||
year_basis='proceedings key, checked against bibliographic year or explicit event year in proceedings title'
|
||||
if year_match:year=int(year_match[1])
|
||||
else:
|
||||
# Old SIGIR/CIKM/IJCAI keys use two digits. Never guess their century.
|
||||
short=re.fullmatch(r'conf/[^/]+/(\d{2})',volume['key'])
|
||||
years=set(re.findall(r'\b(?:19|20)\d{2}\b',title))
|
||||
if not short or len(years)!=1:return None,'unverified_edition_year'
|
||||
year=int(next(iter(years)))
|
||||
if year%100!=int(short[1]):return None,'unverified_edition_year'
|
||||
year_basis='unique explicit event year in proceedings title, corroborated by two-digit proceedings key'
|
||||
if year>through_year:return None,'future_edition'
|
||||
bibliographic=fields.get('year',[])
|
||||
if len(bibliographic)!=1 or not re.fullmatch(r'\d{4}',bibliographic[0]):return None,'ambiguous_bibliographic_year'
|
||||
if int(bibliographic[0])!=year and not re.search(r'\b'+str(year)+r'\b',title):return None,'unverified_year_difference'
|
||||
text=(suffix+' '+title).casefold();track='main'
|
||||
if 'findings' in text:track='findings'
|
||||
elif 'shared task' in text:track='shared_task'
|
||||
elif 'student research' in text or 'workshop' in text or 'wokshop' in text or base in ('ICCVW','EWSL'):track='workshop'
|
||||
elif ('demo track' in text and ('industrial track' in text or 'applied data science track' in text)):track='proceedings_unspecified'
|
||||
elif 'demonstration' in text or re.search(r'\bdemos?\b',text):track='demo'
|
||||
elif 'tutorial' in text:track='tutorial'
|
||||
elif 'industry' in text or 'industrial track' in text or 'applied data science' in text:track='industry'
|
||||
elif 'position paper' in text:track='position'
|
||||
elif 'companion' in text:track='companion'
|
||||
elif 'late-breaking' in text or 'late breaking' in text:track='late_breaking'
|
||||
elif 'doctoral' in text:track='doctoral'
|
||||
elif 'challenge' in text or 'competition' in text:track='competition'
|
||||
elif 'bridge program' in text:track='bridge'
|
||||
elif 'special interest tracks' in text:track='special_interest'
|
||||
elif 'alternate track' in text:track='alternate'
|
||||
elif base=='NeurIPS Datasets and Benchmarks':track='datasets_benchmarks'
|
||||
elif suffix and not (re.fullmatch(r'(?:\d+|Vol\.\s*\d+|Volume \d+: (?:Long|Short) Papers|Long Papers|Short Papers|Selected Papers|Fall)',suffix,re.I)
|
||||
or suffix.casefold() in ('poster','posters','oral','spotlight')):return None,'unclassified_track'
|
||||
elif suffix.casefold() in ('poster','posters') and venue not in ('ICLR','ACL','EMNLP','NAACL','EACL','COLING','CoNLL'):track='poster'
|
||||
if venue=='AAAI+IAAI':track='proceedings_unspecified'
|
||||
if venue=='AAMAS' and year<2002:return None,'predecessor_not_aamas'
|
||||
return {'venue':venue,'venue_aliases':aliases,'year':year,'track':track,'bibliographic_year':int(bibliographic[0]),
|
||||
'rule':family+':'+base,'proceedings_title':title,'edition_year_basis':year_basis},None
|
||||
@@ -5,6 +5,8 @@ import json
|
||||
from pathlib import Path
|
||||
import re
|
||||
import time
|
||||
from datetime import date
|
||||
from urllib.error import HTTPError
|
||||
from urllib.parse import parse_qs, unquote, urljoin, urlsplit
|
||||
|
||||
from paper_atlas.io.http import fetch
|
||||
@@ -98,6 +100,14 @@ def discover(source,cache):
|
||||
return sorted(indexes.values(),key=lambda row:(row['year'],row['venue'],row['track']!='main',row['track']))
|
||||
|
||||
|
||||
def author_names(raw):
|
||||
raw=(raw or '').split(';',1)[0]
|
||||
if ' and ' in raw and all(',' in name for name in raw.split(' and ')):
|
||||
names=[' '.join(reversed([part.strip() for part in name.split(',',1)])) for name in raw.split(' and ')]
|
||||
else:names=raw.split(',')
|
||||
return [clean(name).removesuffix('*').strip() for name in names if clean(name).removesuffix('*').strip()]
|
||||
|
||||
|
||||
def parse_paper(html,entry,source,venue,year,track,index_url):
|
||||
nodes=list(Document(html).root.walk());meta=defaultdict(list)
|
||||
for node in nodes:
|
||||
@@ -112,11 +122,7 @@ def parse_paper(html,entry,source,venue,year,track,index_url):
|
||||
if clean(author):authors.append(clean(author))
|
||||
if not authors:
|
||||
raw=next((clean(n.text()) for n in nodes if n.attrs.get('id')=='authors'),'') or entry.get('index_authors') or ''
|
||||
raw=raw.split(';',1)[0]
|
||||
if ' and ' in raw and all(',' in name for name in raw.split(' and ')):
|
||||
names=[' '.join(reversed([part.strip() for part in name.split(',',1)])) for name in raw.split(' and ')]
|
||||
else:names=raw.split(',')
|
||||
authors=[clean(name).removesuffix('*').strip() for name in names if clean(name).removesuffix('*').strip()]
|
||||
authors=author_names(raw)
|
||||
dois={value for doi in meta['citation_doi'] if doi and (value:=doi_link(doi) or doi.strip().lower()) and re.fullmatch(r'10\.\d{4,9}/\S+',value)}
|
||||
if entry.get('doi'):dois.add(entry['doi'])
|
||||
if len(dois)>1:raise ValueError('Citation DOI differs from the official index')
|
||||
@@ -126,35 +132,95 @@ def parse_paper(html,entry,source,venue,year,track,index_url):
|
||||
'title':clean(title),'abstract':abstract,'authors':authors,'identifiers':identifiers,
|
||||
'venue':venue,'year':year,'track':track,'status':'accepted',
|
||||
'raw_decision':'listed in official proceedings','list_url':index_url,
|
||||
'metadata':{'citation':dict(meta),'index_title':entry['index_title'],'index_authors':entry.get('index_authors')}}
|
||||
'metadata':{'citation':dict(meta),'index_title':entry['index_title'],'index_authors':entry.get('index_authors'),
|
||||
'index_urls':entry.get('index_urls',[index_url])}}
|
||||
|
||||
|
||||
def index_identity(url):
|
||||
parsed=urlsplit(url)
|
||||
match=re.fullmatch(r'/(CVPR|ICCV)(20\d{2})(_findings)?(?:\.py)?/?',parsed.path)
|
||||
return match.groups() if parsed.netloc=='openaccess.thecvf.com' and match else None
|
||||
|
||||
|
||||
def read_index(index,cache):
|
||||
url=index['index_url'];html=decode_html(fetch(url,cache,32*1024**2,delay=1))
|
||||
links=set()
|
||||
for node in Document(html).root.walk():
|
||||
if node.tag!='a':continue
|
||||
link=urljoin(url,node.attrs.get('href',''));day=parse_qs(urlsplit(link).query).get('day',[])
|
||||
if index_identity(link)!=index_identity(url) or index_identity(url) is None or len(day)!=1:continue
|
||||
if day[0]!='all':
|
||||
try:valid=date.fromisoformat(day[0]).year==index['year']
|
||||
except ValueError:valid=False
|
||||
if not valid:continue
|
||||
links.add(link)
|
||||
all_pages=sorted(link for link in links if parse_qs(urlsplit(link).query)['day']==['all'])
|
||||
day_pages=sorted(links-set(all_pages));index_errors=[]
|
||||
if len(all_pages)>1:raise ValueError('Ambiguous all-papers index')
|
||||
pages=[]
|
||||
if all_pages:
|
||||
try:pages=[(all_pages[0],decode_html(fetch(all_pages[0],cache,32*1024**2,delay=1)))]
|
||||
except HTTPError as error:
|
||||
if error.code!=404 or not day_pages:
|
||||
error.close();raise
|
||||
index_errors.append({'url':all_pages[0],'status':404});error.close()
|
||||
if not pages and day_pages:
|
||||
pages=[(page,decode_html(fetch(page,cache,32*1024**2,delay=1))) for page in day_pages]
|
||||
if not pages:pages=[(url,html)]
|
||||
entries={};raw_count=0
|
||||
for page,document in pages:
|
||||
parsed,count=index_entries(document,page);raw_count+=count
|
||||
for entry in parsed:
|
||||
entry['index_urls']=[page];old=entries.get(entry['url'])
|
||||
if old:
|
||||
for key in ('index_title','index_authors','doi'):
|
||||
if old.get(key) and entry.get(key) and old[key]!=entry[key]:raise ValueError('Conflicting metadata across official day indexes')
|
||||
if not old.get(key):old[key]=entry.get(key)
|
||||
old['index_urls'].append(page)
|
||||
else:entries[entry['url']]=entry
|
||||
return list(entries.values()),raw_count,[page for page,_ in pages],index_errors
|
||||
|
||||
|
||||
def index_only_record(entry,source,venue,year,track,index_url,error):
|
||||
if not entry['index_title'].strip():raise ValueError('Missing title in official index')
|
||||
return {'source':source,'external_id':urlsplit(entry['url']).path,'url':entry['url'],
|
||||
'title':entry['index_title'],'abstract':None,'authors':author_names(entry.get('index_authors')),
|
||||
'identifiers':{'doi':entry['doi']} if entry.get('doi') else {},'venue':venue,'year':year,'track':track,
|
||||
'status':'accepted','raw_decision':'listed in official proceedings index',
|
||||
'evidence_url':entry['index_urls'][0],'list_url':index_url,
|
||||
'metadata':{'index_title':entry['index_title'],'index_authors':entry.get('index_authors'),
|
||||
'index_urls':entry['index_urls'],'abstract_fetch_error':{'status':error.code,'url':error.url,'message':str(error)}}}
|
||||
|
||||
|
||||
def collect_index(source,index,cache,out):
|
||||
url=index['index_url'];venue=index['venue'];year=index['year'];track=index['track']
|
||||
entries=index.get('entries')
|
||||
raw_count=len(entries) if entries is not None else None
|
||||
index_urls=[url];index_errors=[];missing_pages=[]
|
||||
if entries is None:
|
||||
html=decode_html(fetch(url,cache,32*1024**2,delay=1))
|
||||
# Some defaults contain only day one; prefer the explicitly linked all-papers page.
|
||||
all_pages={urljoin(url,n.attrs.get('href','')) for n in Document(html).root.walk() if n.tag=='a' and parse_qs(urlsplit(urljoin(url,n.attrs.get('href',''))).query).get('day')==['all'] and urlsplit(urljoin(url,n.attrs.get('href',''))).netloc==urlsplit(url).netloc and urlsplit(urljoin(url,n.attrs.get('href',''))).path==urlsplit(url).path}
|
||||
if len(all_pages)>1:raise ValueError('Ambiguous all-papers index')
|
||||
if all_pages:
|
||||
url=all_pages.pop();html=decode_html(fetch(url,cache,32*1024**2,delay=1))
|
||||
entries,raw_count=index_entries(html,url)
|
||||
entries,raw_count,index_urls,index_errors=read_index(index,cache)
|
||||
if len(index_urls)==1:url=index_urls[0]
|
||||
records=[]
|
||||
for number,entry in enumerate(entries,1):
|
||||
if publication(entry['url'])!=(venue,year):raise ValueError('Publication path differs from requested edition')
|
||||
record=parse_paper(decode_html(fetch(entry['url'],cache,2*1024**2,delay=1)),entry,source,venue,year,track,url)
|
||||
try:record=parse_paper(decode_html(fetch(entry['url'],cache,2*1024**2,delay=1)),entry,source,venue,year,track,url)
|
||||
except HTTPError as error:
|
||||
if error.code!=404:
|
||||
error.close();raise
|
||||
entry.setdefault('index_urls',[url])
|
||||
record=index_only_record(entry,source,venue,year,track,url,error)
|
||||
missing_pages.append(entry['url']);error.close()
|
||||
records.append(record)
|
||||
if number%25==0:print(json.dumps({'source':source,'venue':venue,'year':year,'track':track,'collected':number,'expected':len(entries)}),flush=True)
|
||||
if not records:raise ValueError('Empty publication list')
|
||||
path=Path(out)/f'{source}-{venue}{year}-{track}.jsonl';path.parent.mkdir(parents=True,exist_ok=True)
|
||||
part=path.with_suffix('.part');part.write_text(''.join(json.dumps(r,ensure_ascii=False)+'\n' for r in records));part.replace(path)
|
||||
missing=sum(not r['abstract'] for r in records);missing_authors=sum(not r['authors'] for r in records)
|
||||
manifest={'source':source,'parser_version':1,'venue':venue,'year':year,'track':track,
|
||||
manifest={'source':source,'parser_version':2,'venue':venue,'year':year,'track':track,
|
||||
'count':len(records),'index_link_count':len(entries),'raw_index_entry_count':raw_count,
|
||||
'missing_abstract_count':missing,'missing_authors_count':missing_authors,'file':str(path),
|
||||
'list_url':url,'status':'partial' if missing or missing_authors else 'collected'}
|
||||
'index_urls':index_urls,'index_errors':index_errors,'missing_abstract_pages':missing_pages,
|
||||
'list_url':url,'status':'partial' if missing or missing_authors or index_errors else 'collected'}
|
||||
path.with_suffix('.manifest.json').write_text(json.dumps(manifest,indent=2));print(json.dumps(manifest),flush=True)
|
||||
return manifest
|
||||
|
||||
@@ -165,8 +231,13 @@ def main(argv=None, *, prog=None, source=None):
|
||||
else:parser.set_defaults(source=source)
|
||||
parser.add_argument('--cache',required=True);parser.add_argument('--out',required=True)
|
||||
parser.add_argument('--year',type=int,action='append');parser.add_argument('--venue',choices=['CVPR','ICCV','ECCV'],action='append')
|
||||
parser.add_argument('--retry-catalogue',help='Select only blocked editions from an existing catalogue; write results to --out')
|
||||
args=parser.parse_args(argv);out=Path(args.out);out.mkdir(parents=True,exist_ok=True)
|
||||
indexes=discover(args.source,args.cache)
|
||||
if args.retry_catalogue:
|
||||
retry=json.loads(Path(args.retry_catalogue).read_text())
|
||||
indexes=[index for index in indexes if retry.get(f'{index["venue"]}:{index["year"]}:{index["track"]}',{}).get('status')=='blocked']
|
||||
if not indexes:parser.error('Retry catalogue has no blocked editions for this source')
|
||||
if args.year and set(args.year)-{r['year'] for r in indexes}:parser.error('Requested year is absent from the official source')
|
||||
if args.venue and set(args.venue)-{r['venue'] for r in indexes}:parser.error('Requested venue is absent from this source')
|
||||
if not any((not args.year or r['year'] in args.year) and (not args.venue or r['venue'] in args.venue) for r in indexes):parser.error('Requested venue/year combination is absent from the official source')
|
||||
@@ -181,7 +252,7 @@ def main(argv=None, *, prog=None, source=None):
|
||||
try:
|
||||
manifest=collect_index(args.source,index,args.cache,args.out);catalogue[key]={'status':manifest['status'],'files':[manifest]}
|
||||
except Exception as exc:
|
||||
catalogue[key]={'status':'blocked','year':index['year'],'venue':index['venue'],'track':index['track'],'index_url':index['index_url'],'error':str(exc)}
|
||||
catalogue[key]={'status':'blocked','year':index['year'],'venue':index['venue'],'track':index['track'],'index_url':index['index_url'],'error':str(exc),'error_url':getattr(exc,'url',None)}
|
||||
print(json.dumps(catalogue[key]),flush=True)
|
||||
part=path.with_suffix('.part');part.write_text(json.dumps(catalogue,indent=2));part.replace(path)
|
||||
(out/f'{args.source}-last-run.json').write_text(json.dumps({'requested_indexes':requested,'year_filter':args.year,'venue_filter':args.venue},indent=2))
|
||||
|
||||
@@ -88,7 +88,7 @@ class Store:
|
||||
found = c.execute('SELECT paper_id FROM identifiers WHERE scheme=? AND value=?',(scheme,value)).fetchone()
|
||||
if found:
|
||||
matches.add(found[0])
|
||||
old = c.execute('SELECT paper_id,title,abstract FROM source_records WHERE source_id=? AND external_id=?',(source_id:=self.source(source,url),external_id)).fetchone()
|
||||
old = c.execute('SELECT paper_id,title,abstract,retrieved_at,metadata_json FROM source_records WHERE source_id=? AND external_id=?',(source_id:=self.source(source,url),external_id)).fetchone()
|
||||
if old:
|
||||
matches.add(old[0])
|
||||
key = normalized(title)
|
||||
@@ -105,13 +105,17 @@ class Store:
|
||||
for other in sorted(matches-{paper}):
|
||||
self.merge(paper,other,'explicit identifier or exact title corroborated by authors')
|
||||
if old:
|
||||
c.execute("UPDATE papers SET title=?,abstract=?,title_key=?,authors_json=? WHERE id=? AND title=? AND COALESCE(abstract,'')=COALESCE(?,'')",(title,abstract,key,json.dumps(authors,ensure_ascii=False),paper,old[1],old[2]))
|
||||
old_abstract=old[2] or json.loads(old[4]).get('last_known_abstract',{}).get('abstract')
|
||||
c.execute("UPDATE papers SET title=?,abstract=COALESCE(NULLIF(?,''),abstract),title_key=?,authors_json=CASE WHEN ?='[]' THEN authors_json ELSE ? END WHERE id=? AND title=? AND COALESCE(abstract,'')=COALESCE(?,'')",(title,abstract,key,json.dumps(authors,ensure_ascii=False),json.dumps(authors,ensure_ascii=False),paper,old[1],old_abstract))
|
||||
c.execute("UPDATE papers SET abstract=CASE WHEN abstract IS NULL OR abstract='' THEN ? ELSE abstract END WHERE id=?",(abstract,paper))
|
||||
else:
|
||||
paper = c.execute('INSERT INTO papers(title,abstract,title_key,authors_json,first_published) VALUES(?,?,?,?,?)',(title,abstract,key,json.dumps(authors,ensure_ascii=False),published)).lastrowid
|
||||
for scheme,value in ids:
|
||||
c.execute('INSERT OR IGNORE INTO identifiers VALUES(?,?,?)',(scheme,value,paper))
|
||||
metadata=dict(metadata or {});metadata['record_identifiers']=dict(ids)
|
||||
if old and not abstract:
|
||||
previous={'abstract':old[2],'observed_at':old[3]} if old[2] else json.loads(old[4]).get('last_known_abstract')
|
||||
if previous:metadata['last_known_abstract']=previous
|
||||
c.execute('INSERT INTO source_records(source_id,external_id,paper_id,url,title,abstract,authors_json,metadata_json) VALUES(?,?,?,?,?,?,?,?) ON CONFLICT(source_id,external_id) DO UPDATE SET paper_id=excluded.paper_id,url=excluded.url,title=excluded.title,abstract=excluded.abstract,authors_json=excluded.authors_json,metadata_json=excluded.metadata_json,retrieved_at=CURRENT_TIMESTAMP',(source_id,external_id,paper,url,title,abstract,json.dumps(authors,ensure_ascii=False),json.dumps(metadata,ensure_ascii=False,default=str)))
|
||||
record = c.execute('SELECT id FROM source_records WHERE source_id=? AND external_id=?',(source_id,external_id)).fetchone()[0]
|
||||
for other,_,_ in title_matches:
|
||||
@@ -137,8 +141,9 @@ class Store:
|
||||
|
||||
def decision(self,paper,record,venue,year,track,external_id,url,status,raw_value,aliases=None,identities=None,observed_at=None,decision_date=None,source_decision_id='',submitted_at=None):
|
||||
c = self.conn
|
||||
c.execute("INSERT OR IGNORE INTO venues(acronym,name,field,venue_type) VALUES(?,?,?,'conference')",(venue,venue,'unclassified'))
|
||||
venue_id = c.execute('SELECT id FROM venues WHERE acronym=?',(venue,)).fetchone()[0]
|
||||
existing=c.execute('SELECT id FROM venues WHERE acronym=? COLLATE NOCASE',(venue,)).fetchone()
|
||||
if existing:venue_id=existing[0]
|
||||
else:venue_id=c.execute("INSERT INTO venues(acronym,name,field,venue_type) VALUES(?,?,?,'conference')",(venue,venue,'unclassified')).lastrowid
|
||||
for alias in aliases or []:
|
||||
c.execute('INSERT OR IGNORE INTO venue_aliases VALUES(?,?)',(venue_id,alias))
|
||||
c.execute('INSERT OR IGNORE INTO editions(venue_id,year,track) VALUES(?,?,?)',(venue_id,int(year),track))
|
||||
|
||||
@@ -36,7 +36,7 @@ def backfill(db,files):
|
||||
if any(row.get(key)!=manifest.get(key) for key in ('source','venue','year','track')):
|
||||
raise ValueError('Evidence row differs from edition manifest')
|
||||
record=c.execute('SELECT r.id,r.paper_id,r.metadata_json FROM source_records r JOIN sources s ON s.id=r.source_id WHERE s.name=? AND r.external_id=?',(row['source'],row['external_id'])).fetchone()
|
||||
edition=c.execute('SELECT e.id FROM editions e JOIN venues v ON v.id=e.venue_id WHERE v.acronym=? AND e.year=? AND e.track=?',(row['venue'],row['year'],row['track'])).fetchone()
|
||||
edition=c.execute('SELECT e.id FROM editions e JOIN venues v ON v.id=e.venue_id WHERE v.acronym=? COLLATE NOCASE AND e.year=? AND e.track=?',(row['venue'],row['year'],row['track'])).fetchone()
|
||||
if not record or not edition:raise ValueError('Evidence backfill requires an already imported record and edition')
|
||||
if not c.execute('SELECT 1 FROM submission_sources ss JOIN submissions s ON s.id=ss.submission_id WHERE ss.source_record_id=? AND ss.source_submission_id=? AND s.edition_id=?',(record[0],row['external_id'],edition[0])).fetchone():
|
||||
raise ValueError('No existing submission to backfill')
|
||||
|
||||
+27
-8
@@ -5,6 +5,22 @@ import sqlite3
|
||||
from pathlib import Path
|
||||
|
||||
|
||||
LATEST_DECISION = '''NOT EXISTS (
|
||||
SELECT 1 FROM decisions newer WHERE newer.submission_id=d.submission_id
|
||||
AND (newer.observed_at,COALESCE(newer.decision_date,newer.observed_at),newer.id)
|
||||
> (d.observed_at,COALESCE(d.decision_date,d.observed_at),d.id)
|
||||
)'''
|
||||
ACCEPTED_PAPERS = "SELECT s.paper_id FROM submissions s JOIN decisions d ON d.submission_id=s.id WHERE d.status='accepted' AND "+LATEST_DECISION
|
||||
|
||||
|
||||
def known_acceptances(conn,paper):
|
||||
return [dict(row) for row in conn.execute('''SELECT s.id AS submission_id,v.acronym AS venue,e.year,e.track,
|
||||
d.id AS decision_id,d.decision_date,d.observed_at,d.evidence_url
|
||||
FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id
|
||||
JOIN decisions d ON d.submission_id=s.id WHERE s.paper_id=? AND d.status='accepted' AND '''+LATEST_DECISION+
|
||||
' ORDER BY e.year,v.acronym,e.track,s.id',(paper,))]
|
||||
|
||||
|
||||
def main(argv=None, *, prog=None):
|
||||
parser = argparse.ArgumentParser(prog=prog)
|
||||
parser.add_argument('--db', required=True)
|
||||
@@ -15,6 +31,7 @@ def main(argv=None, *, prog=None):
|
||||
parser.add_argument('--year', type=int)
|
||||
parser.add_argument('--track',help='Exact track, e.g. main, findings, workshop')
|
||||
parser.add_argument('--status', choices=['accepted','rejected','desk_rejected','withdrawn','under_review','unknown'])
|
||||
parser.add_argument('--outcome',choices=['accepted','no_known_acceptance'],help='跨会议的已知录用情况;未查到录用不等于从未录用')
|
||||
parser.add_argument('--limit', type=int, default=20)
|
||||
parser.add_argument('--stats', action='store_true')
|
||||
args = parser.parse_args(argv)
|
||||
@@ -25,6 +42,10 @@ def main(argv=None, *, prog=None):
|
||||
result = {name:conn.execute('SELECT count(*) FROM '+name).fetchone()[0] for name in ('papers','source_records','submissions','decisions','tags','match_candidates')}
|
||||
result['records_by_source'] = [dict(r) for r in conn.execute('SELECT s.name,count(r.id) AS imported_records FROM sources s LEFT JOIN source_records r ON r.source_id=s.id GROUP BY s.id ORDER BY s.name')]
|
||||
result['decision_events_by_status'] = [dict(r) for r in conn.execute('SELECT status,count(*) AS events FROM decisions GROUP BY status')]
|
||||
accepted=conn.execute('SELECT count(DISTINCT paper_id) FROM ('+ACCEPTED_PAPERS+')').fetchone()[0]
|
||||
result['papers_with_known_acceptance']=accepted
|
||||
result['papers_without_known_acceptance']=result['papers']-accepted
|
||||
result['outcome_scope']='Only imported evidence is known. No known acceptance is not proof that a paper was never accepted.'
|
||||
result['coverage'] = [dict(r) for r in conn.execute('SELECT status,count(*) AS sources FROM edition_sources GROUP BY status')]
|
||||
result['runs'] = [dict(r) for r in conn.execute('SELECT * FROM ingest_runs ORDER BY id DESC LIMIT 10')]
|
||||
else:
|
||||
@@ -36,6 +57,8 @@ def main(argv=None, *, prog=None):
|
||||
if args.tag:
|
||||
namespace,value = args.tag.split('=',1)
|
||||
where.append('EXISTS(SELECT 1 FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE pt.paper_id=p.id AND t.namespace=? AND t.value=?)'); params.extend([namespace,value])
|
||||
if args.outcome:
|
||||
where.append('p.id '+('IN' if args.outcome=='accepted' else 'NOT IN')+' ('+ACCEPTED_PAPERS+')')
|
||||
if args.venue or args.year or args.status or args.track:
|
||||
clause = ['1=1']
|
||||
if args.venue:
|
||||
@@ -48,14 +71,7 @@ def main(argv=None, *, prog=None):
|
||||
if args.year:
|
||||
clause.append('e.year=?'); params.append(args.year)
|
||||
if args.status:
|
||||
latest='''EXISTS (
|
||||
SELECT 1 FROM decisions d WHERE d.submission_id=s.id AND d.status=?
|
||||
AND NOT EXISTS (
|
||||
SELECT 1 FROM decisions newer WHERE newer.submission_id=d.submission_id
|
||||
AND (newer.observed_at,COALESCE(newer.decision_date,newer.observed_at),newer.id)
|
||||
> (d.observed_at,COALESCE(d.decision_date,d.observed_at),d.id)
|
||||
)
|
||||
)'''
|
||||
latest='EXISTS (SELECT 1 FROM decisions d WHERE d.submission_id=s.id AND d.status=? AND '+LATEST_DECISION+')'
|
||||
clause.append('(NOT EXISTS(SELECT 1 FROM decisions d WHERE d.submission_id=s.id) OR '+latest+')' if args.status=='unknown' else latest); params.append(args.status)
|
||||
where.append('p.id IN (SELECT s.paper_id FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id WHERE '+' AND '.join(clause)+')')
|
||||
sql = 'SELECT p.* FROM papers p'+(' WHERE '+' AND '.join(where) if where else '')+' ORDER BY p.id LIMIT ?'
|
||||
@@ -65,6 +81,8 @@ def main(argv=None, *, prog=None):
|
||||
paper = dict(row)
|
||||
paper['authors'] = json.loads(paper.pop('authors_json'))
|
||||
paper['identifiers'] = [dict(r) for r in conn.execute('SELECT scheme,value FROM identifiers WHERE paper_id=?',(row['id'],))]
|
||||
paper['known_acceptances']=known_acceptances(conn,row['id'])
|
||||
paper['publication_outcome']='accepted' if paper['known_acceptances'] else 'no_known_acceptance'
|
||||
if args.paper is not None:
|
||||
paper['tags'] = [dict(r) for r in conn.execute('SELECT t.namespace,t.value,pt.evidence_key FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE pt.paper_id=?',(row['id'],))]
|
||||
paper['sources'] = [dict(r) for r in conn.execute('SELECT s.name,r.external_id,r.url,r.title,r.abstract,r.retrieved_at FROM source_records r JOIN sources s ON s.id=r.source_id WHERE r.paper_id=?',(row['id'],))]
|
||||
@@ -77,6 +95,7 @@ def main(argv=None, *, prog=None):
|
||||
if conn.execute("SELECT 1 FROM sqlite_master WHERE type='table' AND name='decision_sources'").fetchone():
|
||||
decision['sources']=[dict(r) for r in conn.execute('SELECT s.name,r.external_id,ds.source_decision_id FROM decision_sources ds JOIN source_records r ON r.id=ds.source_record_id JOIN sources s ON s.id=r.source_id WHERE ds.decision_id=?',(d['id'],))]
|
||||
submission['decisions'].append(decision)
|
||||
submission['latest_status']=submission['decisions'][-1]['status'] if submission['decisions'] else 'unknown'
|
||||
if conn.execute("SELECT 1 FROM sqlite_master WHERE type='table' AND name='submission_sources'").fetchone():
|
||||
submission['sources']=[dict(r) for r in conn.execute('SELECT so.name,r.external_id,ss.source_submission_id FROM submission_sources ss JOIN source_records r ON r.id=ss.source_record_id JOIN sources so ON so.id=r.source_id WHERE ss.submission_id=?',(sub['id'],))]
|
||||
submissions.append(submission)
|
||||
|
||||
@@ -0,0 +1,145 @@
|
||||
import hashlib
|
||||
import json
|
||||
from contextlib import closing
|
||||
from pathlib import Path
|
||||
import sqlite3
|
||||
import tempfile
|
||||
from types import SimpleNamespace
|
||||
import unittest
|
||||
from unittest.mock import patch
|
||||
|
||||
from paper_atlas.collectors.dblp import XML_SHA
|
||||
from paper_atlas.collectors.dblp_records import collect,identifiers,normalize_row,material_reason
|
||||
from paper_atlas.collectors.dblp_scope import scope
|
||||
from paper_atlas.db.store import Store
|
||||
from paper_atlas.ingestion.records import ingest_file
|
||||
|
||||
|
||||
class DblpRecordTests(unittest.TestCase):
|
||||
def setUp(self):
|
||||
# Tiny fixtures may live on a small tmpfs; production reserve stays 8 GiB.
|
||||
budget=patch('paper_atlas.collectors.dblp_records.shutil.disk_usage',return_value=SimpleNamespace(free=16*1024**3))
|
||||
budget.start();self.addCleanup(budget.stop)
|
||||
|
||||
def row(self,family='aaai',book='AAAI',year=2024,key='one'):
|
||||
return {'record_type':'inproceedings','key':f'conf/{family}/{key}','publtype':None,
|
||||
'fields':{'title':['A research publication'],'author':['Jane Doe 0001','John Smith'],
|
||||
'booktitle':[book],'year':[str(year)],'crossref':[f'conf/{family}/{year}'],'ee':['https://doi.org/10.1234/'+key]}}
|
||||
|
||||
def volume(self,family,year,title=None):
|
||||
return {'record_type':'proceedings','key':f'conf/{family}/{year}','fields':{'title':[title or f'{family.upper()} {year}'],'year':[str(year)]}}
|
||||
|
||||
def test_real_directory_aliases_do_not_confuse_other_conferences(self):
|
||||
row=self.row('clear2','CLeaR');volume=self.volume('clear2',2024,'Causal Learning and Reasoning, 2024')
|
||||
self.assertEqual(scope(row,volume)[0]['venue'],'CLeaR')
|
||||
self.assertIsNone(scope(self.row('clear','CLEAR'),self.volume('clear',2024))[0])
|
||||
self.assertIsNone(scope(self.row('aamas','Adaptive Agents and Multi-Agent Systems'),self.volume('aamas',2024))[0])
|
||||
self.assertEqual(scope(self.row('atal','AAMAS'),self.volume('atal',2024))[0]['venue'],'AAMAS')
|
||||
self.assertEqual(scope(self.row('aips','ICAPS'),self.volume('aips',2024))[0]['venue'],'ICAPS')
|
||||
|
||||
def test_conference_year_is_distinct_from_publication_year(self):
|
||||
row=self.row('nips','NIPS',1988);row['fields']['crossref']=['conf/nips/1987']
|
||||
volume=self.volume('nips',1987,'NIPS Conference, Denver, 1987; published 1988')
|
||||
result,_=scope(row,volume);self.assertEqual(result['year'],1987);self.assertEqual(result['bibliographic_year'],1988)
|
||||
volume['fields']['title']=['NIPS collected papers']
|
||||
self.assertEqual(scope(row,volume)[1],'unverified_year_difference')
|
||||
|
||||
def test_joint_events_and_tracks_are_explicit(self):
|
||||
result,_=scope(self.row('ijcai','IJCAI/ECAI',2022),self.volume('ijcai',2022))
|
||||
self.assertEqual(result['venue'],'ECAI+IJCAI');self.assertEqual(result['venue_aliases'],['ECAI','IJCAI'])
|
||||
result,_=scope(self.row('coling','LREC/COLING'),self.volume('coling',2024))
|
||||
self.assertEqual(result['venue'],'COLING+LREC')
|
||||
for book,track in [('ACL (Findings)','findings'),('ACL (Student Research Workshop)','workshop'),('ACL (System Demonstrations)','demo')]:
|
||||
self.assertEqual(scope(self.row('acl',book),self.volume('acl',2024))[0]['track'],track)
|
||||
for suffix,track in [('Special interest tracks and posters','special_interest'),('Alternate Track Papers & Posters','alternate')]:
|
||||
self.assertEqual(scope(self.row('www','WWW ('+suffix+')'),self.volume('www',2024))[0]['track'],track)
|
||||
volume=self.volume('pkdd',2026,'ECML PKDD 2026, Applied Data Science Track, Demo Track and Industrial Track')
|
||||
self.assertEqual(scope(self.row('pkdd','ECML PKDD (10)',2026),volume)[0]['track'],'proceedings_unspecified')
|
||||
|
||||
def test_short_year_keys_require_a_unique_explicit_year_not_a_guessed_century(self):
|
||||
row=self.row('sigir','SIGIR',1980);volume=self.volume('sigir',1980,'Information Retrieval Research, Cambridge, June 1980')
|
||||
volume['key']='conf/sigir/80';volume['fields']['year']=['1981'];row['fields']['crossref']=[volume['key']]
|
||||
edition,_=scope(row,volume);self.assertEqual(edition['year'],1980)
|
||||
self.assertIn('two-digit',edition['edition_year_basis'])
|
||||
volume['fields']['title']=['SIGIR 1980, published 1981']
|
||||
self.assertEqual(scope(row,volume)[1],'unverified_edition_year')
|
||||
volume['fields']['title']=['SIGIR 1989']
|
||||
self.assertEqual(scope(row,volume)[1],'unverified_edition_year')
|
||||
|
||||
def test_crossref_mismatch_and_future_editions_are_held_for_review(self):
|
||||
self.assertEqual(scope(self.row(),self.volume('kdd',2024))[1],'crossref_venue_conflict')
|
||||
self.assertEqual(scope(self.row(year=2027),self.volume('aaai',2027))[1],'future_edition')
|
||||
|
||||
def test_only_own_identifier_links_are_used_and_ambiguity_is_preserved(self):
|
||||
own,ambiguous=identifiers({'ee':['https://doi.org/10.1234/published','https://doi.org/10.48550/arXiv.2401.00001','https://openreview.net/forum?id=realForum'],
|
||||
'cite':['https://doi.org/10.9999/reference']})
|
||||
self.assertEqual(own,{'doi':'10.1234/published','arxiv':'2401.00001','openreview':'realForum'});self.assertFalse(ambiguous)
|
||||
own,ambiguous=identifiers({'ee':['https://doi.org/10.1234/a','https://doi.org/10.1234/b','https://openreview.net/forum?id=2026-Oral--99-placeholder']})
|
||||
self.assertEqual(own,{});self.assertEqual(len(ambiguous['doi']),2)
|
||||
|
||||
def test_frontmatter_and_anonymous_event_headers_are_not_paper_acceptances(self):
|
||||
for title in ('Title, Preface.','Title, Conference Committee, Table of Contents, Author Index.','Front Matter.','Backmatter.','Foreword.'):
|
||||
self.assertEqual(material_reason(title,['An Editor'],'conf/sigir/C78',1978,'main'),'frontmatter')
|
||||
for title in ('Sponsors.','IJCAI-09 Awards and Distinguished Papers.','2013 Conference Organization.','Area Chairs and Program Committee.','Welcome to ICDM 2005.','Workshop Summaries.'):
|
||||
self.assertIsNotNone(material_reason(title,[],'conf/ijcai/X09',2009,'main'))
|
||||
self.assertEqual(material_reason("Wiki Workshop Chairs' Welcome.",['An Organizer'],'conf/www/X19t',2019,'companion'),'frontmatter')
|
||||
self.assertEqual(material_reason('Attention - from Neuroscience to the Web and Wellbeing.',[],'conf/www/X19b',2019,'companion'),'unverified_proceedings_material')
|
||||
row=self.row();row['fields']['title']=['Sponsors.'];row['fields']['author']=[]
|
||||
self.assertEqual(normalize_row(row,{'conf/aaai/2024':self.volume('aaai',2024)},{'AAAI'})[1],'proceedings_heading')
|
||||
|
||||
def test_missing_authors_alone_do_not_remove_real_research_records(self):
|
||||
self.assertIsNone(material_reason('The Onomastica interlanguage pronunciation lexicon.',[],'conf/interspeech/X95',1995,'main'))
|
||||
self.assertIsNone(material_reason('Learning Models of Relational Stochastic Processes.',[],'conf/ecml/SanghaiDW05',2005,'main'))
|
||||
self.assertIsNone(material_reason('Sponsors.', ['A Researcher'],'conf/aaai/research',2024,'main'))
|
||||
|
||||
def fixture(self,root,rows):
|
||||
catalogue=root/'dblp-catalogue.sqlite';volume=self.volume('aaai',2024)
|
||||
with closing(sqlite3.connect(catalogue)) as c, c:
|
||||
c.execute('CREATE TABLE proceedings(key TEXT PRIMARY KEY,metadata_json TEXT)')
|
||||
c.execute('INSERT INTO proceedings VALUES(?,?)',(volume['key'],json.dumps(volume)))
|
||||
candidates=root/'candidates.jsonl';candidates.write_text(''.join(json.dumps(row)+'\n' for row in rows))
|
||||
manifest={'snapshot_sha256':XML_SHA,'candidate_sha256':hashlib.sha256(candidates.read_bytes()).hexdigest(),
|
||||
'candidate_records':len(rows),'record_types':{'proceedings':1,'inproceedings':len(rows)}}
|
||||
catalogue.with_name('dblp-ai-candidates.manifest.json').write_text(json.dumps(manifest))
|
||||
return catalogue,candidates
|
||||
|
||||
def test_normalized_files_import_with_unknown_abstracts_and_no_invented_retracted_acceptance(self):
|
||||
with tempfile.TemporaryDirectory() as tmp:
|
||||
root=Path(tmp);withdrawn=self.row(key='two');withdrawn['publtype']='withdrawn'
|
||||
catalogue,candidates=self.fixture(root,[self.row(),withdrawn,self.row(book='AAAI Workshops',key='workshop')])
|
||||
result=collect(catalogue,root/'out',['AAAI'],candidates=candidates)
|
||||
self.assertEqual(result['normalized_records'],2);self.assertEqual(result['excluded_by_reason']['separate_workshop'],1)
|
||||
manifest=result['files'][0];self.assertEqual(manifest['missing_abstract_count'],2)
|
||||
rows=[json.loads(line) for line in Path(manifest['file']).read_text().splitlines()]
|
||||
self.assertEqual(rows[0]['authors'],['Jane Doe','John Smith']);self.assertIsNone(rows[0]['abstract'])
|
||||
self.assertEqual(rows[1]['status'],'unknown');self.assertEqual(rows[1]['decision_events'],[])
|
||||
db=root/'papers.sqlite';ingest_file(db,manifest['file'])
|
||||
with closing(sqlite3.connect(db)) as c:self.assertEqual(c.execute('SELECT count(*) FROM decisions').fetchone()[0],1)
|
||||
|
||||
def test_checksum_failure_and_duplicate_keys_do_not_publish_files(self):
|
||||
with tempfile.TemporaryDirectory() as tmp:
|
||||
root=Path(tmp);catalogue,candidates=self.fixture(root,[self.row(),self.row()])
|
||||
with self.assertRaisesRegex(ValueError,'Repeated DBLP'):collect(catalogue,root/'out',['AAAI'],candidates=candidates)
|
||||
self.assertFalse(list((root/'out').glob('*.jsonl')))
|
||||
candidates.write_text('tampered')
|
||||
with self.assertRaisesRegex(ValueError,'checksum mismatch'):collect(catalogue,root/'out',['AAAI'],candidates=candidates)
|
||||
|
||||
def test_case_variants_use_one_conference_edition_and_submission(self):
|
||||
with tempfile.TemporaryDirectory() as tmp:
|
||||
store=Store(Path(tmp)/'papers.sqlite');self.addCleanup(store.conn.close)
|
||||
paper,one=store.record('pmlr','one','https://example.org/one','A paper','Abstract',[],{'doi':'10.1234/one'})
|
||||
store.decision(paper,one,'CORL',2024,'main','one','https://example.org/one','accepted','Accept',identities=[('publication_doi','10.1234/one')])
|
||||
same,two=store.record('dblp','two','https://example.org/two','A paper',None,[],{'doi':'10.1234/one'})
|
||||
store.decision(same,two,'CoRL',2024,'main','two','https://example.org/two','accepted','Published',identities=[('publication_doi','10.1234/one')])
|
||||
self.assertEqual(store.conn.execute('SELECT count(*) FROM venues').fetchone()[0],1)
|
||||
self.assertEqual(store.conn.execute('SELECT count(*) FROM submissions').fetchone()[0],1)
|
||||
|
||||
def test_production_disk_reserve_stops_before_publishing(self):
|
||||
with tempfile.TemporaryDirectory() as tmp:
|
||||
root=Path(tmp);catalogue,candidates=self.fixture(root,[self.row()])
|
||||
with patch('paper_atlas.collectors.dblp_records.shutil.disk_usage',return_value=SimpleNamespace(free=1024)):
|
||||
with self.assertRaisesRegex(RuntimeError,'8 GiB'):collect(catalogue,root/'out',['AAAI'],candidates=candidates)
|
||||
self.assertFalse(list((root/'out').glob('*.jsonl')))
|
||||
|
||||
|
||||
if __name__=='__main__':unittest.main()
|
||||
@@ -9,6 +9,17 @@ from paper_atlas.ingestion.records import ingest_file
|
||||
|
||||
|
||||
class StoreTests(unittest.TestCase):
|
||||
def test_partial_source_refresh_preserves_known_abstract_and_can_later_restore_it(self):
|
||||
paper,record=self.store.record('cvf','paper','https://example.org/paper','Known title','Known abstract',['Jane Doe'])
|
||||
self.store.record('cvf','paper','https://example.org/paper','Known title',None,[],metadata={'abstract_fetch_error':{'status':404}})
|
||||
self.store.record('cvf','paper','https://example.org/paper','Known title',None,[],metadata={'abstract_fetch_error':{'status':404}})
|
||||
c=self.store.conn
|
||||
self.assertEqual(c.execute('SELECT abstract,authors_json FROM papers').fetchone(),('Known abstract','["Jane Doe"]'))
|
||||
source=c.execute('SELECT abstract,metadata_json FROM source_records WHERE id=?',(record,)).fetchone()
|
||||
self.assertIsNone(source[0]);self.assertEqual(json.loads(source[1])['last_known_abstract']['abstract'],'Known abstract')
|
||||
self.store.record('cvf','paper','https://example.org/paper','Updated title','Restored revised abstract',['Jane Doe'])
|
||||
self.assertEqual(c.execute('SELECT title,abstract FROM papers').fetchone(),('Updated title','Restored revised abstract'))
|
||||
|
||||
def setUp(self):
|
||||
self.tmp = tempfile.TemporaryDirectory()
|
||||
self.addCleanup(self.tmp.cleanup)
|
||||
|
||||
@@ -9,6 +9,41 @@ from paper_atlas.db.store import Store
|
||||
|
||||
|
||||
class QueryTests(unittest.TestCase):
|
||||
def run_query(self,db,*args):
|
||||
return json.loads(subprocess.run([sys.executable,'-B','-m','paper_atlas','query','--db',str(db),*args],check=True,capture_output=True,text=True).stdout)
|
||||
|
||||
def test_rejection_then_acceptance_at_another_venue_preserves_both_attempts(self):
|
||||
with tempfile.TemporaryDirectory() as tmp:
|
||||
db=Path(tmp)/'papers.sqlite';store=Store(db);self.addCleanup(store.conn.close)
|
||||
paper,first=store.record('openreview_snapshot','forum1','https://example.org/1','Original title','Abstract',['Jane Doe'],{'arxiv':'2401.00001','openreview':'forum1'})
|
||||
store.decision(paper,first,'ICLR',2024,'main','forum1','https://example.org/reject','rejected','Reject',identities=[('openreview','forum1')],observed_at='2024-02-01T00:00:00Z')
|
||||
same,second=store.record('colm','forum2','https://example.org/2','Revised title','Revised abstract',['Jane Doe'],{'arxiv':'2401.00001','openreview':'forum2'})
|
||||
store.decision(same,second,'COLM',2025,'main','forum2','https://example.org/accept','accepted','Accept',identities=[('openreview','forum2')],observed_at='2025-08-01T00:00:00Z')
|
||||
store.conn.commit();self.assertEqual(same,paper)
|
||||
rows=self.run_query(db,'--venue','ICLR','--status','rejected','--outcome','accepted')
|
||||
self.assertEqual([row['id'] for row in rows],[paper])
|
||||
self.assertEqual(rows[0]['publication_outcome'],'accepted')
|
||||
self.assertEqual([a['venue'] for a in rows[0]['known_acceptances']],['COLM'])
|
||||
detail=self.run_query(db,'--paper',str(paper))[0]
|
||||
self.assertEqual([(s['acronym'],s['latest_status']) for s in detail['submissions']],[('ICLR','rejected'),('COLM','accepted')])
|
||||
self.assertEqual(self.run_query(db,'--venue','ICLR','--status','rejected','--outcome','no_known_acceptance'),[])
|
||||
self.assertEqual(self.run_query(db,'--stats')['papers_with_known_acceptance'],1)
|
||||
|
||||
def test_later_rejection_elsewhere_does_not_erase_acceptance_and_unknown_is_not_never(self):
|
||||
with tempfile.TemporaryDirectory() as tmp:
|
||||
db=Path(tmp)/'papers.sqlite';store=Store(db);self.addCleanup(store.conn.close)
|
||||
paper,one=store.record('source','one','https://example.org/1','One paper','Abstract',[])
|
||||
store.decision(paper,one,'COLM',2024,'main','one','https://example.org/accept','accepted','Accept',observed_at='2024-01-01T00:00:00Z')
|
||||
store.decision(paper,one,'ICLR',2025,'main','two','https://example.org/reject','rejected','Reject',observed_at='2025-01-01T00:00:00Z')
|
||||
unknown,_=store.record('arxiv','other','https://example.org/other','No observed submissions','Abstract',[])
|
||||
store.conn.commit()
|
||||
self.assertEqual([r['id'] for r in self.run_query(db,'--outcome','accepted')],[paper])
|
||||
self.assertEqual([r['id'] for r in self.run_query(db,'--outcome','no_known_acceptance')],[unknown])
|
||||
store.decision(paper,one,'COLM',2024,'main','one','https://example.org/withdraw','withdrawn','Withdrawn',observed_at='2026-01-01T00:00:00Z')
|
||||
store.conn.commit();self.assertEqual(self.run_query(db,'--outcome','accepted'),[])
|
||||
history=self.run_query(db,'--paper',str(paper))[0]
|
||||
self.assertEqual([d['status'] for d in history['submissions'][0]['decisions']],['accepted','withdrawn'])
|
||||
|
||||
def test_joint_conference_alias_does_not_duplicate_submission(self):
|
||||
with tempfile.TemporaryDirectory() as tmp:
|
||||
db=Path(tmp)/'papers.sqlite';store=Store(db);self.addCleanup(store.conn.close)
|
||||
|
||||
+75
-1
@@ -1,11 +1,85 @@
|
||||
import tempfile
|
||||
import io
|
||||
import json
|
||||
from pathlib import Path
|
||||
import unittest
|
||||
from unittest.mock import patch
|
||||
from urllib.error import HTTPError
|
||||
|
||||
from paper_atlas.collectors.vision import collect_index, decode_html, discover, index_entries, parse_paper
|
||||
from paper_atlas.collectors.vision import collect_index, decode_html, discover, index_entries, parse_paper,main
|
||||
|
||||
|
||||
class VisionTests(unittest.TestCase):
|
||||
def cvf_fixture(self,year=2018):
|
||||
root=f'https://openaccess.thecvf.com/CVPR{year}.py'
|
||||
papers=[f'https://openaccess.thecvf.com/content_cvpr_{year}/html/Paper{i}_CVPR_{year}_paper.html' for i in (1,2,3)]
|
||||
def entry(url,title='Paper'):
|
||||
return f'<dt><a href="{url}">{title}</a></dt><dd>Jane Doe, John Smith</dd>'
|
||||
return root,papers,entry
|
||||
|
||||
def test_all_explicit_days_are_combined_and_overlapping_papers_are_not_duplicated(self):
|
||||
root,papers,entry=self.cvf_fixture();day1=root+'?day=2018-06-19';day2=root+'?day=2018-06-20'
|
||||
pages={root:f'<a href="{day1}">Day1</a><a href="{day2}">Day2</a><a href="https://evil.example/CVPR2018.py?day=all">Other</a><a href="/CVPR2019.py?day=all">Wrong year</a>',day1:'<dl>'+entry(papers[0])+entry(papers[1])+'</dl>',day2:'<dl>'+entry(papers[1])+entry(papers[2])+'</dl>'}
|
||||
pages.update({paper:'<div id="papertitle">Paper</div><div id="abstract">Abstract</div>' for paper in papers})
|
||||
with tempfile.TemporaryDirectory() as tmp,patch('paper_atlas.collectors.vision.fetch',side_effect=lambda url,*a,**kw:pages[url].encode()) as fetch:
|
||||
manifest=collect_index('cvf',{'venue':'CVPR','year':2018,'track':'main','index_url':root},tmp,tmp)
|
||||
rows=[json.loads(line) for line in Path(manifest['file']).read_text().splitlines()]
|
||||
self.assertEqual(manifest['count'],3);self.assertEqual(manifest['raw_index_entry_count'],4)
|
||||
self.assertEqual(manifest['index_urls'],[day1,day2]);self.assertEqual(manifest['status'],'collected')
|
||||
self.assertEqual(rows[1]['metadata']['index_urls'],[day1,day2])
|
||||
self.assertEqual({call.args[0] for call in fetch.call_args_list},set(pages))
|
||||
|
||||
def test_conflicting_copies_across_days_fail_before_publishing(self):
|
||||
root,papers,entry=self.cvf_fixture();days=[root+'?day=2018-06-19',root+'?day=2018-06-20']
|
||||
pages={root:''.join(f'<a href="{day}">Day</a>' for day in days),days[0]:'<dl>'+entry(papers[0],'First title')+'</dl>',days[1]:'<dl>'+entry(papers[0],'Different title')+'</dl>'}
|
||||
with tempfile.TemporaryDirectory() as tmp,patch('paper_atlas.collectors.vision.fetch',side_effect=lambda url,*a,**kw:pages[url].encode()):
|
||||
with self.assertRaisesRegex(ValueError,'Conflicting metadata'):
|
||||
collect_index('cvf',{'venue':'CVPR','year':2018,'track':'main','index_url':root},tmp,tmp)
|
||||
self.assertFalse(list(Path(tmp).glob('*.jsonl')))
|
||||
|
||||
def test_missing_abstract_page_keeps_official_index_metadata_and_marks_partial(self):
|
||||
root,papers,entry=self.cvf_fixture();error=HTTPError(papers[0],404,'Not Found',{},io.BytesIO())
|
||||
def fetch(url,*args,**kwargs):
|
||||
if url==root:return ('<dl>'+entry(papers[0],'Known publication')+'</dl>').encode()
|
||||
raise error
|
||||
with tempfile.TemporaryDirectory() as tmp,patch('paper_atlas.collectors.vision.fetch',side_effect=fetch):
|
||||
manifest=collect_index('cvf',{'venue':'CVPR','year':2018,'track':'main','index_url':root},tmp,tmp)
|
||||
row=json.loads(Path(manifest['file']).read_text())
|
||||
self.assertEqual(row['title'],'Known publication');self.assertIsNone(row['abstract'])
|
||||
self.assertEqual(row['authors'],['Jane Doe','John Smith']);self.assertEqual(row['evidence_url'],root)
|
||||
self.assertEqual(manifest['status'],'partial');self.assertEqual(manifest['missing_abstract_pages'],[papers[0]])
|
||||
self.assertEqual(row['metadata']['abstract_fetch_error']['status'],404)
|
||||
|
||||
def test_forbidden_paper_is_not_replaced_with_a_fallback(self):
|
||||
root,papers,entry=self.cvf_fixture()
|
||||
def fetch(url,*args,**kwargs):
|
||||
if url==root:return ('<dl>'+entry(papers[0])+'</dl>').encode()
|
||||
raise HTTPError(url,403,'Forbidden',{},io.BytesIO())
|
||||
with tempfile.TemporaryDirectory() as tmp,patch('paper_atlas.collectors.vision.fetch',side_effect=fetch):
|
||||
with self.assertRaises(HTTPError):collect_index('cvf',{'venue':'CVPR','year':2018,'track':'main','index_url':root},tmp,tmp)
|
||||
self.assertFalse(list(Path(tmp).glob('*.jsonl')))
|
||||
|
||||
def test_broken_all_papers_link_can_use_all_advertised_days(self):
|
||||
root,papers,entry=self.cvf_fixture();day=root+'?day=2018-06-19';all_url=root+'?day=all'
|
||||
pages={root:f'<a href="{day}">Day</a><a href="{all_url}">All</a>',day:'<dl>'+entry(papers[0])+'</dl>',papers[0]:'<div id="papertitle">Paper</div><div id="abstract">Abstract</div>'}
|
||||
def fetch(url,*a,**kw):
|
||||
if url==all_url:raise HTTPError(url,404,'Not Found',{},io.BytesIO())
|
||||
return pages[url].encode()
|
||||
with tempfile.TemporaryDirectory() as tmp,patch('paper_atlas.collectors.vision.fetch',side_effect=fetch):
|
||||
manifest=collect_index('cvf',{'venue':'CVPR','year':2018,'track':'main','index_url':root},tmp,tmp)
|
||||
self.assertEqual(manifest['index_urls'],[day]);self.assertEqual(manifest['index_errors'],[{'url':all_url,'status':404}])
|
||||
|
||||
def test_selective_retry_uses_separate_output_and_leaves_original_catalogue_intact(self):
|
||||
with tempfile.TemporaryDirectory() as tmp:
|
||||
old=Path(tmp)/'old.json';payload={'CVPR:2018:main':{'status':'blocked'},'CVPR:2019:main':{'status':'collected'}};old.write_text(json.dumps(payload))
|
||||
indexes=[{'venue':'CVPR','year':year,'track':'main','index_url':f'https://openaccess.thecvf.com/CVPR{year}'} for year in (2018,2019)]
|
||||
output=Path(tmp)/'repaired'
|
||||
with patch('paper_atlas.collectors.vision.discover',return_value=indexes),patch('paper_atlas.collectors.vision.collect_index',return_value={'status':'collected','count':1}) as collect:
|
||||
main(['--cache',tmp,'--out',str(output),'--retry-catalogue',str(old)],source='cvf')
|
||||
self.assertEqual(collect.call_count,1);self.assertEqual(collect.call_args.args[1]['year'],2018)
|
||||
self.assertEqual(json.loads(old.read_text()),payload)
|
||||
self.assertEqual(set(json.loads((output/'cvf-index-status.json').read_text())),{'CVPR:2018:main'})
|
||||
|
||||
def entry(self):
|
||||
return {'url':'https://www.ecva.net/papers/eccv_2024/papers_ECCV/html/1_ECCV_2024_paper.php','index_title':'Paper','index_authors':'Jane Doe*, John Smith','doi':'10.1007/example_1'}
|
||||
|
||||
|
||||
Reference in New Issue
Block a user