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Author SHA1 Message Date
Zayden-Jung 891a63d982 Merge pull request '封装来源身份只读预检与投稿历史证据' (#51) from codex/source-identity-audit into main
Metadata integrity checks / metadata (push) Successful in 2m49s
Reviewed-on: #51
2026-11-10 06:55:25 +00:00
codex-bot fe3e2502a5 Add read-only source identity candidate audit with evidence shards
Metadata integrity checks / metadata (push) Successful in 2m42s
2026-11-10 02:55:27 +08:00
Zayden-Jung b675a38b97 Merge pull request '适配AAMAS2026官方目录并保留撤稿与撤回证据' (#49) from codex/aamas2026 into main
Metadata integrity checks / metadata (push) Successful in 2m45s
Reviewed-on: #49
2026-11-09 18:49:37 +00:00
Zayden-Jung cb875b8eef Merge pull request '封装NeurIPS2026节目采集,分离投稿与重复展示' (#50) from codex/neurips-program into main
Metadata integrity checks / metadata (push) Successful in 2m34s
Reviewed-on: #50
2026-11-09 18:49:29 +00:00
codex-bot 57a557c66b Merge current main and preserve scope and AAMAS documentation entries
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2026-11-10 01:12:45 +08:00
codex-bot 5b5e606f0c Correct independent affiliation inventory and target section heading mutation
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2026-11-10 01:09:25 +08:00
codex-bot 9f84fd7caf Separate italic title content from publisher status notices
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2026-11-10 01:04:46 +08:00
codex-bot bf05d3cdc8 Keep day-only withdrawal evidence through native ingestion
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2026-11-10 01:02:54 +08:00
codex-bot 930df2a4d5 Preserve explicit withdrawal and byte-exact AAMAS fixture evidence
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2026-11-10 01:00:58 +08:00
codex-bot 37380e1d3b Collect reviewed AAMAS 2026 tracks and hold explicit retraction evidence
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2026-11-10 00:57:09 +08:00
12 changed files with 856 additions and 5 deletions
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@@ -62,6 +62,16 @@ jobs:
assert not neurips_report['database_written'] and not neurips_report['pdfs_downloaded']
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','dblp-family','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','aamas-proceedings','--year','2025','--snapshots',str(src/'tests/fixtures/aamas2025'),'--out',str(root/'installed-aamas2025')],cwd=outside,check=True)
aamas2026 = json.loads(gzip.decompress((src/'tests/fixtures/aamas2026-fixture.json.gz').read_bytes()))
aamas2026_snapshots = root/'aamas2026-snapshots'
aamas2026_snapshots.mkdir()
(aamas2026_snapshots/'contents.html').write_text(aamas2026['contents'])
(aamas2026_snapshots/'receipts.json').write_text(json.dumps(aamas2026['receipts']))
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','aamas-proceedings','--year','2026','--snapshots',str(aamas2026_snapshots),'--out',str(root/'installed-aamas2026')],cwd=outside,check=True)
aamas2026_report = json.loads((root/'installed-aamas2026/aamas-proceedings-2026.json').read_text())
assert aamas2026_report['records'] == 639 and len(aamas2026_report['held_publications']) == 1
assert aamas2026_report['status_counts'] == {'accepted': 638, 'withdrawn': 1}
assert not aamas2026_report['database_written'] and not aamas2026_report['pdfs_downloaded']
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','iclr-archive','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','acl','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','springer-selected','--help'],cwd=outside,check=True)
@@ -86,6 +96,7 @@ jobs:
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','public-openreview','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','coverage','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','histories','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','source-identities','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','curate','identifiers','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-c','from paper_atlas.postgres.writer import PostgresStore, WriteConnection'],cwd=outside,check=True)
smoke = "from paper_atlas.db.store import Store; from paper_atlas.config import DEFAULT_REGISTRY; import json; assert {'COLM','MM','MLSys'} <= {v['acronym'] for v in json.loads(DEFAULT_REGISTRY.read_text())['venues']}; s=Store('installed.sqlite'); s.conn.close()"
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@@ -8,6 +8,8 @@ Paper Atlas 将 arXiv、AI 会议论文集及公开投稿决定整理到可追
当前主动补漏从 **2020 年**起;2000 年起已发现的名单、缺口与待办保存在[补漏恢复清单](docs/coverage/backfill-handoff-2026-11-10.md),下次从这里接续。已有旧数据保留,范围排除不算补齐。
AAMAS 2026 的官方 HTML 目录由 `collect aamas-proceedings --year 2026` 适配,区分 track 和发表形式,keynote 排除、撤稿证据单独保留;[采集与恢复说明](docs/aamas-proceedings.md)。采集不写数据库,仍需身份核验和增量导入。
历史 ICLR 2014–2016 官方录用页由 `collect iclr-archive` 适配,保留主会/workshop及重复展示证据;运行和身份核验边界见 [历史档案说明](docs/coverage/iclr-archive-2014-2016.md)。
`collect springer-selected` 核验限定的会后选集,分开保存会议年份、出版年份及选集事件身份。目前支持 AISTATS 1993 对应的 1994 年出版选集,原始会议决定仍须单独核查;配置、证据和恢复见 [会后选集说明](docs/springer-selected-volumes.md)。
@@ -114,3 +116,5 @@ CI 在已授权的远程 runner 上运行测试、构建 wheel,并从源码目
整合后的运行版本依赖、交互约束和生产切换顺序见 [运行版本整合](docs/research-runtime.md)。
已导入整卷的逐条轨道修正见 [edition-tracks 维护流程](docs/edition-tracks.md):按完整证据生成只读计划,保留原投稿和决定 ID,事务性修正 edition、标识与覆盖,并防止旧整卷刷新覆盖分类。
入库前可使用通用的[来源身份只读预检](docs/source-identity-audit.md),导出候选论文、稳定标识和既有投稿决定证据;候选结果需要审核,不会自动批准导入。
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@@ -1,6 +1,31 @@
# AAMAS 官方论文集元数据
`paper_atlas.collectors.aamas` 是按需运行的采集适配器,通过统一入口 `collect aamas-proceedings` 使用。支持已独立核验的 **AAMAS 2012、2025** HTML 版式;其他年份需先核对官方目录和逐篇结构,再增加适配,不能仅替换年份。2025 解析单独封装在 `paper_atlas.collectors.aamas2025`。
`paper_atlas.collectors.aamas` 是按需运行的采集适配器,通过统一入口 `collect aamas-proceedings` 使用。支持已独立核验的 **AAMAS 2012、2025、2026** HTML 版式;其他年份需先核对官方目录和逐篇结构,再增加适配,不能仅替换年份。2025、2026 解析分别封装在 `paper_atlas.collectors.aamas2025`、`paper_atlas.collectors.aamas2026`。
## AAMAS 2026
2026 只读取[官方 HTML 目录](https://www.ifaamas.org/Proceedings/aamas2026/forms/contents.htm),不下载 PDF。冻结目录 SHA256 `ce2bc7fc5da340930343901506a9ce37c0334d4068f07546431c9deee3f13de9`,643 个条目:keynote 3、research 338、extended abstract 185、AAAI 19、Blue Sky 17、doctoral 34、demo 44、JAAMAS 3。
排除 3 个 keynote;research 的 p238 明确标注 `Retracted June 8, 2026`,完整题名、作者、栏目、日期、原文和来源回执保存在采集报告 `held_publications` 中,**不会输出 accepted 或 withdrawn 投稿记录**。当前决定模型没有独立 retracted 状态,后续须单独建模和核验;原始证据不能删除。任何新增或改变的撤稿标记都会停止采集,等待人工核查。
另一个 extended abstract p3178 明确标注 `Withdrawn June 8, 2026`,输出 `withdrawn`,在 metadata 保留日期 `2026-06-08` 和日精度;原网页没有时区/时刻,不能伪造决定 timestamp,不补造其此前的接受决定或 PDF 链接。因此 639 个输出条目是 **638 accepted、1 withdrawn**,按六个 track 分组:`proceedings_unspecified` 522、`aaai_transfer` 19、`blue_sky` 17、`doctoral` 34、`demo` 44、`jaamas` 3。全文/扩展摘要是发表形式,不是研究类型;research 栏目不能证明每篇原始 main/special 投稿轨道。JAAMAS 保留期刊展示语义,不制造另一次独立审稿录用。
[AAAI 转投详细政策](https://cyprusconferences.org/aamas2026/call-for-papers-aaai-track/) 要求基于 AAAI-26 rejected 稿件;[总览](https://cyprusconferences.org/aamas2026/calls/) 却写 AAAI-25,须保留冲突。采集器保留 AAAI 栏目归属,不据此生成原 AAAI 投稿 ID、年份或逐篇拒稿决定。目录不是原始决定 note,未来关联仍需逐篇证据。
```sh
paper-atlas collect aamas-proceedings --year 2026 \
--snapshots /data/paper-index/collected/aamas2026-primary-evidence-v1 \
--out /data/paper-index/collected/aamas2026-normalized-v1
```
在线模式将 `--snapshots` 换成 `--cache /data/paper-index/cache/aamas2026`。冻结模式 `receipts.json` 的 `receipts` 至少包含官方目录 URL、相对 `file`、`bytes`、`sha256`、`status=200` 和带时区 `finished_at`。拒绝越界路径、越界符号链接、失败状态、哈希/大小不符的页面。这里只读取目录对应回执,其他已冻结政策网页继续保留。
输出六组 JSONL/manifest、原始 HTML 与最后发布的 `aamas-proceedings-2026.json`;统一入口沿用输出目录锁和暂存目录。manifest 全部为 `partial`,639 条 HTML 摘要缺失如实记录。发布编号使用年份和起始页,随机 PDF 文档 ID 单独保留,不能沿用 2025 的 pN.pdf 规则。
首次部署先核对来源哈希和生产状态,再在新输出目录运行采集、独立比对 643 条标题/作者/栏目分区,随后做 PostgreSQL 身份预检与增量导入。采集、远程 CI 通过或目录含某个年份均不代表生产已导入、摘要齐全或最终去重完成。较早年份不自动启动补采,当前主动补漏范围按用户要求从 2020 年起。
## AAMAS 2025
2025 版式使用[官方首页](https://www.ifaamas.org/Proceedings/aamas2025/)和[出版目录](https://www.ifaamas.org/Proceedings/aamas2025/forms/contents.htm)。原始目录共 479 条:3 keynote、260 research paper、148 extended abstract、12 Blue Sky、25 doctoral、22 Demo 栏目、9 JAAMAS。排除 keynote,输出 476 条;Demo 栏目中的 p3000 是明确标题的 COMP24 竞赛报告,发表年份仍为 2025,格式记 `competition_report`、投稿 track 留作 `proceedings_unspecified`,保留原 Demo 栏目证据。其余输出按 track 分组为 409 unspecified、12 blue_sky、25 doctoral、21 demo、9 jaamas。
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@@ -0,0 +1,21 @@
# 来源身份只读预检
`audit source-identities` 在 PostgreSQL 的同一 `REPEATABLE READ READ ONLY` 快照中,检查规范化 JSONL 的来源绑定、稳定标识及精确标题候选,并导出候选论文的原始来源和投稿决定历史。用于入库前评审,不执行导入、合并或标识修改。
```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas audit source-identities \
--pg-service foundry-research --pg-schema research \
--files /data/paper-index/collected/example/main.jsonl \
/data/paper-index/collected/example/position.jsonl \
--out /data/paper-index/collected/example-identity-preflight-v1
```
每个 JSONL 必须有同名 `.manifest.json`,包含 `source`、`venue`、`year`、`track`、`count` 和 `file_sha256`。逐行校验届次、显式决定状态、标识类型和跨文件来源主键唯一性;文件哈希和数量必须相符。只读取调用者指定的文件,不跟随 manifest 中的绝对 `file` 路径;原始行哈希包含换行符。原始 JSONL 和 manifest 应与报告一起保留。
输出目录必须不存在,防止复用旧报告或覆盖证据。失败会保留 `failed.json` 及已完成分片,不能把部分输出当成功;排查后使用新的输出目录重新核查。成功报告 `postgresql-preflight.json` 最后原子写入,记录输入哈希、数据库快照和每条候选。实体详情存为 `entities/<分片>/<paper_id>.json.gz`,报告中列出压缩文件的 SHA-256;包含完整 paper、标识和限量原始来源、投稿、决定及出处。每篇最多保留 100 条来源、200 次投稿,每次投稿最多 200 条决定,每组决定或投稿出处最多 100 条,所有截断均显式标记。精确标题最多取 21 个候选;达到上限即标记,不能据此推算总数。这里没有计算全表精确数量。
候选分类用于安排审核:既有来源记录需要核对并避免重放,多个绑定冲突必须暂缓;单个 DOI、arXiv 或 OpenReview 绑定也可能错误,必须核对原文、标题、作者和历史。作者比较保留完整规范化姓名的重复次数,但姓名相同不能证明是同一个人。未找到精确标题或标识不能证明是新作品,仍需近似标题、版本和跨会历史核查。
所有条目固定为 `not_approved_for_import`,批准数量为 0。不要直接把此报告当成 curation 计划或导入队列。后续获批导入前应重新检查实时来源绑定;来源摘要缺失不得覆盖已有摘要,旧拒稿与新录用应作为不同投稿经历保留。本命令不能代替所有导入结束后的全库去重、覆盖和约束验收。
构建与测试仅在已确认的 `ces-control:host` 远程 runner 执行。集成测试使用已有 PostgreSQL 服务做真实只读候选查询,不往生产库添加测试记录。
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"""Read-only, evidence-preserving identity candidates for normalized source files.
A candidate is never permission to import or merge. Absence of an exact match is
never proof of a new work. Run again against a fresh snapshot before curation.
"""
import argparse
from collections import Counter
import gzip
import hashlib
import json
from pathlib import Path
from paper_atlas.db.store import author_keys, normalized
from paper_atlas.db.submissions import timestamp
from paper_atlas.postgres.client import ReadConnection
STATUSES = {'accepted', 'rejected', 'desk_rejected', 'withdrawn', 'under_review', 'unknown'}
def digest(data):
return hashlib.sha256(data).hexdigest()
def authors_multiset(authors):
# author_keys intentionally removes duplicates; identity review must retain them.
return Counter(key for author in authors for key in author_keys([author]))
def load_inputs(files):
records, inputs, seen = [], [], set()
for filename in files:
path = Path(filename).resolve()
manifest_path = path.with_suffix('.manifest.json')
raw_manifest = manifest_path.read_bytes()
manifest = json.loads(raw_manifest)
hasher, count = hashlib.sha256(), 0
with path.open('rb') as stream:
for line_number, line in enumerate(stream, 1):
hasher.update(line)
row = json.loads(line)
for key in ('source', 'external_id', 'title', 'venue', 'track'):
if not isinstance(row.get(key), str) or not row[key].strip():
raise ValueError(f'Invalid {key}: {path.name}:{line_number}')
if type(row.get('year')) is not int or row.get('status') not in STATUSES:
raise ValueError('Invalid year or explicit source status')
for key in ('source', 'venue', 'year', 'track'):
if row[key] != manifest.get(key):
raise ValueError(f'Manifest scope mismatch: {key}')
authors = row.get('authors')
if not isinstance(authors, list) or any(not isinstance(a, (str, list, dict)) for a in authors):
raise ValueError('Invalid authors')
identifiers = row.get('identifiers', {})
if not isinstance(identifiers, dict) or any(
not isinstance(k, str) or not k.strip() or not isinstance(v, str) or not v.strip()
for k, v in identifiers.items()):
raise ValueError('Identifiers must contain singular nonempty strings')
key = (row['source'], row['external_id'])
if key in seen:
raise ValueError('Duplicate source/external_id across inputs')
seen.add(key)
record = {k: row[k] for k in ('source', 'external_id', 'title', 'authors',
'venue', 'year', 'track', 'status')}
record.update(identifiers=identifiers, file=str(path), line=line_number,
raw_line_sha256=digest(line), source_record_hits=[],
identifier_hits=[], title_candidate_ids=[])
records.append(record)
count += 1
if not count or count != manifest.get('count') or hasher.hexdigest() != manifest.get('file_sha256'):
raise ValueError('Input count/hash mismatch or empty input')
inputs.append({'file': str(path), 'file_sha256': hasher.hexdigest(), 'count': count,
'manifest_sha256': digest(raw_manifest), 'manifest': manifest})
if not records:
raise ValueError('At least one nonempty input is required')
return records, inputs
def _lookup(connection, values, columns, lateral):
"""Bound scalar VALUES allow the existing text codec to encode each key."""
width = len(columns)
for start in range(0, len(values), 100):
batch = values[start:start + 100]
sql = 'WITH keys(' + ','.join(columns) + ') AS (VALUES ' + ','.join(
'(' + ','.join(['?'] * width) + ')' for _ in batch) + ') SELECT keys.n,hit.* FROM keys JOIN LATERAL (' + lateral + ') hit ON true'
for row in connection.execute(sql, tuple(value for item in batch for value in item)):
yield dict(row)
def find_candidates(connection, records):
source_keys = [(i, row['source'], row['external_id']) for i, row in enumerate(records)]
for hit in _lookup(connection, source_keys, ('n', 'source', 'external_id'), '''
SELECT r.id,r.paper_id FROM sources s JOIN source_records r ON r.source_id=s.id
WHERE s.name=keys.source AND r.external_id=keys.external_id'''):
records[hit.pop('n')]['source_record_hits'].append(hit)
identifiers = []
for i, row in enumerate(records):
pairs = {(row['source'], row['external_id']), *row['identifiers'].items()}
identifiers.extend((i, scheme, value) for scheme, value in sorted(pairs))
for hit in _lookup(connection, identifiers, ('n', 'scheme', 'value'), '''
SELECT scheme,value,paper_id FROM identifiers
WHERE scheme=keys.scheme AND value=keys.value'''):
records[hit.pop('n')]['identifier_hits'].append(hit)
title_keys = [(i, normalized(row['title'])) for i, row in enumerate(records)]
for hit in _lookup(connection, title_keys, ('n', 'title_key'), '''
SELECT id AS paper_id FROM papers WHERE title_key=keys.title_key ORDER BY id LIMIT 21'''):
records[hit['n']]['title_candidate_ids'].append(hit['paper_id'])
def entity_packet(connection, paper_id):
paper = connection.execute('SELECT * FROM papers WHERE id=?', (paper_id,)).fetchone()
if paper is None:
raise RuntimeError('Candidate disappeared from read-only snapshot')
sources = [dict(r) for r in connection.execute('''SELECT r.*,s.name AS source
FROM source_records r JOIN sources s ON s.id=r.source_id
WHERE r.paper_id=? ORDER BY r.id LIMIT 101''', (paper_id,))]
attempts = [dict(r) for r in connection.execute('''SELECT s.*,v.acronym AS venue,e.year,e.track,e.event_key
FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id
WHERE s.paper_id=? ORDER BY s.id LIMIT 201''', (paper_id,))]
packet = {'paper': dict(paper), 'identifiers': [dict(r) for r in connection.execute(
'SELECT * FROM identifiers WHERE paper_id=? ORDER BY scheme,value', (paper_id,))],
'source_records': sources[:100], 'source_records_truncated': len(sources) > 100,
'attempts': attempts[:200], 'attempts_truncated': len(attempts) > 200}
for attempt in packet['attempts']:
observations = [dict(r) for r in connection.execute(
'SELECT * FROM decisions WHERE submission_id=? ORDER BY id LIMIT 201', (attempt['id'],))]
attempt['decisions'], attempt['decisions_truncated'] = observations[:200], len(observations) > 200
provenance = [dict(r) for r in connection.execute('''SELECT ss.*,r.external_id,s.name AS source
FROM submission_sources ss JOIN source_records r ON r.id=ss.source_record_id
JOIN sources s ON s.id=r.source_id WHERE ss.submission_id=?
ORDER BY ss.source_record_id,ss.source_submission_id LIMIT 101''', (attempt['id'],))]
attempt['sources'], attempt['sources_truncated'] = provenance[:100], len(provenance) > 100
for decision in attempt['decisions']:
provenance = [dict(r) for r in connection.execute('''SELECT ds.*,r.external_id,s.name AS source
FROM decision_sources ds JOIN source_records r ON r.id=ds.source_record_id
JOIN sources s ON s.id=r.source_id WHERE ds.decision_id=?
ORDER BY ds.source_record_id,ds.source_decision_id LIMIT 101''', (decision['id'],))]
decision['sources'], decision['sources_truncated'] = provenance[:100], len(provenance) > 100
return packet
def classify(record, entities):
anchors = {r['paper_id'] for r in record['source_record_hits'] + record['identifier_hits']}
titles = record['title_candidate_ids']
flags = []
own_authors = authors_multiset(record['authors'])
if not own_authors:
flags.append('missing_source_authors')
if any(n > 1 for n in own_authors.values()):
flags.append('duplicate_normalized_author_names')
if len(normalized(record['title'])) < 25:
flags.append('short_title')
comparisons = []
for pid in sorted(anchors | set(titles)):
entity = entities[pid]
other = authors_multiset(entity['authors'])
comparisons.append({'paper_id': pid,
'normalized_title_equal': normalized(record['title']) == normalized(entity['title']),
'nonempty_author_multiset_equal': bool(own_authors) and own_authors == other,
'author_name_overlap': sorted(own_authors.keys() & other.keys())})
if len(anchors) > 1:
kind = 'conflicting_existing_bindings_hold'
elif record['source_record_hits']:
kind = 'existing_source_record_reconcile_no_replay'
elif anchors:
kind = 'existing_identifier_binding_requires_review'
elif len(titles) >= 21:
kind = 'title_candidate_limit_reached_hold'
elif not titles:
kind = 'no_exact_match_not_proof_of_novelty'
elif len(titles) > 1:
kind = 'multiple_exact_title_entities_hold'
elif comparisons[0]['nonempty_author_multiset_equal']:
kind = 'one_exact_title_author_multiset_requires_review'
elif comparisons[0]['author_name_overlap']:
kind = 'partial_author_overlap_requires_review'
else:
kind = 'no_author_agreement_hold'
return {'kind': kind, 'flags': flags, 'comparisons': comparisons,
'title_candidates_truncated': len(titles) >= 21,
'decision': 'not_approved_for_import'}
def _atomic_json(path, value):
temporary = path.with_suffix(path.suffix + '.part')
with temporary.open('w', encoding='utf-8') as stream:
json.dump(value, stream, ensure_ascii=False, indent=2)
stream.write('\n')
temporary.replace(path)
def audit(files, out, *, pg_service, pg_schema):
# Reject input corruption before opening a database connection or reserving output.
records, inputs = load_inputs(files)
out = Path(out)
out.mkdir(parents=True, exist_ok=False)
(out / 'audit.lock').write_text(timestamp() + '\n')
connection = None
try:
connection = ReadConnection(pg_service, pg_schema)
connection.execute("SET LOCAL statement_timeout='60s'")
if connection.execute('SHOW transaction_read_only').fetchone()[0] != 'on':
raise RuntimeError('A read-only transaction is required')
snapshot = dict(connection.execute('''SELECT current_database() AS database,current_schema() AS schema,
transaction_timestamp()::text AS transaction_at,pg_current_snapshot()::text AS snapshot''').fetchone())
find_candidates(connection, records)
ids = sorted({hit['paper_id'] for row in records for hit in row['source_record_hits'] + row['identifier_hits']} |
{pid for row in records for pid in row['title_candidate_ids']})
entities, index = {}, {}
for number, pid in enumerate(ids, 1):
packet = entity_packet(connection, pid)
relative = Path('entities') / str(pid // 10000) / f'{pid}.json.gz'
target = out / relative
target.parent.mkdir(parents=True, exist_ok=True)
raw = gzip.compress(json.dumps(packet, ensure_ascii=False).encode(), mtime=0)
target.write_bytes(raw)
index[str(pid)] = {'file': relative.as_posix(), 'sha256': digest(raw)}
entities[pid] = {'title': packet['paper']['title'],
'authors': json.loads(packet['paper']['authors_json'])}
if number % 250 == 0 or number == len(ids):
print(json.dumps({'phase': 'entity_evidence', 'completed': number, 'total': len(ids)}), flush=True)
kinds = Counter()
for row in records:
row.update(classify(row, entities))
kinds[row['kind']] += 1
report = {'status': 'completed_read_only_candidates_not_import_approval',
'started_snapshot': snapshot, 'completed_at': timestamp(), 'transaction_read_only': True,
'database_written': False, 'approved_for_import': 0, 'records': len(records),
'kind_counts': dict(kinds), 'inputs': inputs, 'entities': index, 'entries': records,
'limitations': ['Exact keys only; no match does not establish a new work.',
'Name agreement does not prove person or scientific-work identity.',
'Bound identifiers can be incorrect; review titles, authors and original evidence.',
'Source/history limits are explicit in compressed entity packets.',
'Not a final whole-database deduplication or coverage audit.']}
_atomic_json(out / 'postgresql-preflight.json', report)
return report
except Exception as error:
_atomic_json(out / 'failed.json', {'status': 'failed_no_import_approval',
'error_type': type(error).__name__, 'database_written': False})
raise
finally:
if connection is not None:
connection.close()
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog, description=__doc__)
parser.add_argument('--files', nargs='+', required=True, type=Path)
parser.add_argument('--pg-service', required=True)
parser.add_argument('--pg-schema', required=True)
parser.add_argument('--out', required=True, type=Path)
args = parser.parse_args(argv)
report = audit(args.files, args.out, pg_service=args.pg_service, pg_schema=args.pg_schema)
print(json.dumps({k: report[k] for k in ('status', 'records', 'kind_counts', 'approved_for_import')}, ensure_ascii=False))
+1
View File
@@ -46,6 +46,7 @@ COMMANDS = {
('audit','arxiv'): ('paper_atlas.audits.arxiv', {}, '核验 arXiv 原始编号、重复行与 ZIP 完整性'),
('audit','arxiv-tags'): ('paper_atlas.audits.arxiv_tags', {}, '逐记录核验 arXiv 类别及出处完整性'),
('audit','public-openreview'): ('paper_atlas.audits.public_openreview', {}, '核对公开负面决定与已有投稿历史'),
('audit','source-identities'): ('paper_atlas.audits.source_identity', {}, '只读核对来源文件的身份候选与既有投稿历史'),
('audit','histories'): ('paper_atlas.audits.histories', {}, '只读核对跨会议投稿历史及决定来源关系'),
}
+6 -3
View File
@@ -136,6 +136,9 @@ def read_pages(cache=None, snapshots=None):
def _collect(year, out, *, cache=None, snapshots=None):
if year == 2026:
from paper_atlas.collectors.aamas2026 import collect as collect_2026
return collect_2026(out, cache=cache, snapshots=snapshots)
if year == 2025:
from paper_atlas.collectors.aamas2025 import collect as collect_2025
return collect_2025(out, cache=cache, snapshots=snapshots)
@@ -193,8 +196,8 @@ def _collect(year, out, *, cache=None, snapshots=None):
def collect(year, out, *, cache=None, snapshots=None):
if year not in (2012, 2025):
raise ValueError('Only independently reviewed AAMAS 2012/2025 layouts are supported')
if year not in (2012, 2025, 2026):
raise ValueError('Only independently reviewed AAMAS 2012/2025/2026 layouts are supported')
out = Path(out)
out.mkdir(parents=True, exist_ok=True)
with (out/'aamas.collect.lock').open('a') as lock:
@@ -204,7 +207,7 @@ def collect(year, out, *, cache=None, snapshots=None):
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog)
parser.add_argument('--year', type=int, choices=[2012, 2025], required=True)
parser.add_argument('--year', type=int, choices=[2012, 2025, 2026], required=True)
parser.add_argument('--out', required=True)
source = parser.add_mutually_exclusive_group(required=True)
source.add_argument('--cache')
+219
View File
@@ -0,0 +1,219 @@
"""Reviewed AAMAS 2026 HTML metadata; retractions stay outside accepted queues."""
from collections import Counter, defaultdict
import hashlib
import json
from pathlib import Path
import re
import tempfile
from paper_atlas.collectors.aamas2025 import one
from paper_atlas.db.submissions import timestamp
from paper_atlas.io.html import Document, Node, clean
from paper_atlas.io.http import fetch
ROOT = 'https://www.ifaamas.org/Proceedings/aamas2026/'
URL = ROOT+'forms/contents.htm'
TITLE = 'AAMAS 2026: Proceedings of the 2026 International Conference on Autonomous Agents and Multiagent Systems'
SECTIONS = {
'K': ('Keynote Talks', 'keynote', 'keynote', 3),
'R': ('Research Paper Track', 'full_paper', 'proceedings_unspecified', 338),
'1': ('Extended Abstracts', 'extended_abstract', 'proceedings_unspecified', 185),
'A': ('AAAI Track', 'full_paper', 'aaai_transfer', 19),
'B': ('Blue Sky Ideas Track', 'blue_sky_paper', 'blue_sky', 17),
'C': ('Doctoral Consortium', 'doctoral_abstract', 'doctoral', 34),
'D': ('Demonstration Track', 'demo', 'demo', 44),
'J': ('JAAMAS Track', 'journal_presentation', 'jaamas', 3),
}
PDF = re.compile(r'\.\./pdfs/([A-Z]{4}[0-9]{4})\.pdf')
RETRACTION_TITLE = 'Unifying Model-Free Efficiency and Model-Based Representations via Latent Dynamics'
WITHDRAWAL_TITLE = 'Cognitive Heterogeneity and Behavioral Biases in Multi-Stage Supply Chains: Evidence from LLM-Based Agent Simulations'
def parse_authors(paragraph):
font = one([n for n in paragraph.walk() if n.tag == 'font' and
n.attrs.get('color', '').lower() == '#222222'], 'ordered author block')
authors, affiliations = [], []
name, affiliation = '', ''
def flush():
nonlocal name, affiliation
if clean(name) or clean(affiliation):
if not clean(name):
raise ValueError('Affiliation without author')
authors.append(clean(name)); affiliations.append(clean(affiliation))
name, affiliation = '', ''
for child in font.children:
if isinstance(child, str):
name += child
elif child.tag == 'br':
flush()
elif child.tag == 'i':
affiliation += child.text()
else:
raise ValueError('Unreviewed author markup: '+child.tag)
flush()
if not authors:
raise ValueError('Empty author list')
return authors, affiliations
def parse_contents(html, evidence):
doc = Document(html)
if [clean(n.text()) for n in doc.root.walk() if n.tag == 'title'] != [TITLE]:
raise ValueError('Unexpected AAMAS proceedings title/year')
section = None
headers, records, excluded, held = [], [], [], []
counts, seen_pages, seen_pdf_ids = Counter(), set(), set()
for node in doc.root.walk():
if node.tag != 'p' or any(n is not node and n.tag == 'p' for n in node.walk()):
continue
anchors = [n.attrs['name'] for n in node.walk() if n.tag == 'a' and n.attrs.get('name') in SECTIONS]
if anchors:
section = one(anchors, 'section anchor')
if clean(node.text()) != SECTIONS[section][0]:
raise ValueError('Publisher section heading differs from reviewed layout')
headers.append(section)
page_fonts = [n for n in node.walk() if n.tag == 'font' and
n.attrs.get('color', '').lower() == '#444444']
if not page_fonts:
continue
page_text = clean(one(page_fonts, 'page marker').text())
page_match = re.fullmatch(r'\(Page ([1-9][0-9]*)\)', page_text)
if not page_match or section not in SECTIONS:
raise ValueError('Invalid page or paper outside reviewed sections')
page = int(page_match[1])
if page in seen_pages:
raise ValueError('Repeated publisher page ID')
seen_pages.add(page)
title_node = one([n for n in node.walk() if n.tag == 'strong'], 'paper title')
title = clean(title_node.text())
if not title:
raise ValueError('Empty paper title')
authors, affiliations = parse_authors(node)
link = one([n for n in node.walk() if n.tag == 'a' and 'href' in n.attrs], 'paper link')
href = link.attrs['href']
title_nodes = {id(n) for n in title_node.walk()}
retractions = [clean(n.text()) for n in link.walk() if n.tag == 'i' and id(n) not in title_nodes]
heading, publication_format, track, _ = SECTIONS[section]
counts[section] += 1
metadata = {'publisher_page': page, 'section_url': URL, 'section_anchor': section,
'section_heading': heading, 'publication_format': publication_format,
'author_affiliations': affiliations, 'source_evidence': evidence,
'decision_date_precision': 'not_supplied',
'missing_abstract_reason': 'Publisher HTML supplies no abstract; research PDF not downloaded.',
'publication_evidence': 'Published proceedings entry, not an original decision note.'}
withdrawn = retractions == ['Withdrawn June 8, 2026']
if withdrawn:
if (section, page, title, href) != ('1', 3178, WITHDRAWAL_TITLE, ''):
raise ValueError('Unreviewed withdrawal notice')
metadata.update({'publication_state': 'withdrawn',
'withdrawal_date': '2026-06-08',
'raw_publication_state': retractions[0],
'decision_date_precision': 'day',
'publication_evidence': 'Explicit dated publisher withdrawal notice, not an original review decision note.'})
elif retractions:
if (section, page, title, href, retractions) != ('R', 238, RETRACTION_TITLE, '', ['Retracted June 8, 2026']):
raise ValueError('Unreviewed retraction or publication status markup')
held.append({'source': 'aamas_proceedings', 'external_id': '2026/p238',
'title': title, 'authors': authors, 'year': 2026, 'track': track,
'url': URL+'#R', 'abstract': None, 'identifiers': {},
'observed_at': evidence['observed_at'], 'metadata': metadata,
'publication_state': 'retracted', 'retraction_date': '2026-06-08',
'raw_publication_state': retractions[0],
'hold_reason': 'Explicit retraction; not an accepted/withdrawn submission assertion. Dedicated decision modeling and identity review required.'})
continue
if not withdrawn:
match = PDF.fullmatch(href)
if not match or match[1] in seen_pdf_ids:
raise ValueError('Invalid or repeated publisher PDF ID')
seen_pdf_ids.add(match[1])
metadata.update({'publisher_document_id': match[1], 'paper_url': ROOT+'pdfs/'+match[1]+'.pdf'})
if section == 'K':
excluded.append({'publisher_page': page, 'title': title, 'authors': authors,
'metadata': metadata, 'reason': 'Publisher keynote, not a research submission.'})
continue
metadata['track_scope_note'] = ('Published format known; individual main/special submission track not established.'
if track == 'proceedings_unspecified' else 'Explicit publisher section.')
if section == 'A':
metadata['prior_submission_note'] = 'AAAI transfer section does not supply original submission IDs or individual prior decision notes; none inferred.'
if section == 'J':
metadata['track_scope_note'] = 'Journal presentation; not another independent journal review or research-track acceptance.'
records.append({'source': 'aamas_proceedings', 'external_id': '2026/p'+str(page),
'url': URL+'#'+section, 'title': title, 'abstract': None,
'authors': authors, 'identifiers': {}, 'venue': 'AAMAS', 'venue_aliases': [],
'year': 2026, 'track': track, 'status': 'withdrawn' if withdrawn else 'accepted',
'observed_at': evidence['observed_at'],
'raw_decision': retractions[0] if withdrawn else 'listed in official AAMAS 2026 published proceedings '+heading,
'metadata': metadata,
'tags': [{'namespace': 'aamas_proceedings:publication_format', 'value': publication_format}]})
if headers != list(SECTIONS) or dict(counts) != {k: v[3] for k, v in SECTIONS.items()}:
raise ValueError('Publisher section inventory differs from reviewed 2026 layout')
if (len(records), len(excluded), len(held)) != (639, 3, 1):
raise ValueError('Unexpected accepted/keynote/retraction partition')
if Counter(r['status'] for r in records) != {'accepted': 638, 'withdrawn': 1}:
raise ValueError('Unexpected publisher publication-state partition')
return records, excluded, held
def read_page(cache, snapshots):
if bool(cache) == bool(snapshots):
raise ValueError('Choose exactly one cache or frozen snapshot directory')
if snapshots:
base = Path(snapshots).resolve()
frozen = json.loads((base/'receipts.json').read_text())['receipts']
r = one([r for r in frozen if r['url'] == URL], 'frozen response receipt')
filename = Path(r['file'])
if (filename.is_absolute() or '..' in filename.parts or
not (base/filename).resolve().is_relative_to(base) or r.get('status') != 200):
raise ValueError('Unsafe or unsuccessful publisher response')
data = (base/filename).read_bytes()
if len(data) > 8*1024**2 or len(data) != r['bytes'] or hashlib.sha256(data).hexdigest() != r['sha256']:
raise ValueError('Frozen publisher response checksum/size mismatch')
observed = r['finished_at']
else:
data = fetch(URL, cache, 8*1024**2, delay=1)
r = json.loads((Path(cache)/hashlib.sha256(URL.encode()).hexdigest()).with_suffix('.json').read_text())
observed = r['retrieved_at']
timestamp(observed)
return data, {'url': URL, 'sha256': hashlib.sha256(data).hexdigest(), 'bytes': len(data),
'file': 'evidence/'+hashlib.sha256(data).hexdigest()+'.html',
'observed_at': observed, 'http_status': 200, 'response_receipt': r}
def collect(out, *, cache=None, snapshots=None):
data, evidence = read_page(cache, snapshots)
records, excluded, held = parse_contents(data.decode('utf-8'), evidence)
grouped = defaultdict(list)
for row in records:
grouped[row['track']].append(row)
out = Path(out); out.mkdir(parents=True, exist_ok=True); files = []
with tempfile.TemporaryDirectory(prefix='.aamas2026-', dir=out) as temporary:
stage = Path(temporary); (stage/'evidence').mkdir()
(stage/evidence['file']).write_bytes(data)
for track, group in sorted(grouped.items()):
p = stage/f'aamas-proceedings-2026-{track}.jsonl'
p.write_text(''.join(json.dumps(r, ensure_ascii=False)+'\n' for r in group))
manifest = {'source': 'aamas_proceedings', 'parser_version': 3, 'venue': 'AAMAS', 'year': 2026,
'track': track, 'count': len(group), 'file': str(out/p.name),
'file_sha256': hashlib.sha256(p.read_bytes()).hexdigest(), 'list_url': URL,
'status': 'partial', 'missing_abstract_count': len(group),
'status_counts': dict(Counter(r['status'] for r in group)),
'publication_format_counts': dict(Counter(r['metadata']['publication_format'] for r in group)),
'note': 'Reviewed TOC partition excluding keynote/retracted entries; identity and full submission history remain unverified.'}
p.with_suffix('.manifest.json').write_text(json.dumps(manifest, ensure_ascii=False, indent=2)+'\n')
files.append(manifest)
result = {'source': 'aamas_proceedings', 'year': 2026, 'finished_at': timestamp(),
'status': 'collected_pending_identity_review', 'records': len(records), 'files': files,
'excluded_publications': excluded, 'held_publications': held,
'status_counts': dict(Counter(r['status'] for r in records)),
'source_receipts': [evidence], 'database_written': False, 'pdfs_downloaded': False,
'note': 'Retraction evidence held separately; publication is not an original decision note, and absence is not rejection.'}
report = 'aamas-proceedings-2026.json'
(stage/report).write_text(json.dumps(result, ensure_ascii=False, indent=2)+'\n')
(out/'evidence').mkdir(exist_ok=True)
for p in (stage/'evidence').iterdir():
p.replace(out/'evidence'/p.name)
for p in stage.iterdir():
if p.is_file() and p.name != report:
p.replace(out/p.name)
(stage/report).replace(out/report)
return result
Binary file not shown.
+167
View File
@@ -0,0 +1,167 @@
import gzip
import hashlib
import json
from pathlib import Path
import tempfile
import sqlite3
import unittest
from unittest.mock import patch
from paper_atlas.collectors import aamas, aamas2026
from paper_atlas.ingestion.records import ingest_file
FIXTURE = json.loads(gzip.decompress((Path(__file__).parent/'fixtures/aamas2026-fixture.json.gz').read_bytes()))
EVIDENCE = {'url': aamas2026.URL, 'observed_at': FIXTURE['receipts']['receipts'][0]['finished_at']}
class Aamas2026Tests(unittest.TestCase):
def parse(self, html=None):
return aamas2026.parse_contents(FIXTURE['contents'] if html is None else html, EVIDENCE)
def snapshots(self, folder):
folder.mkdir()
(folder/'contents.html').write_text(FIXTURE['contents'])
(folder/'receipts.json').write_text(json.dumps(FIXTURE['receipts']))
return folder
def test_every_publisher_title_author_affiliation_and_page_preserved(self):
rows, excluded, held = self.parse()
self.assertEqual((len(rows), len(excluded), len(held)), (639, 3, 1))
expected = {r['publisher_page']: r for r in FIXTURE['expected_entries']}
self.assertEqual(len(expected), 643)
all_rows = rows+excluded+held
self.assertEqual({r['metadata']['publisher_page'] for r in all_rows}, set(expected))
for r in all_rows:
e = expected[r['metadata']['publisher_page']]
self.assertEqual(r['title'], e['title'])
self.assertEqual(r['authors'], e['authors'])
self.assertEqual(r['metadata']['author_affiliations'], e['affiliations'])
self.assertEqual(r['metadata']['section_heading'], e['section'])
for r in rows:
self.assertIsNone(r['abstract'])
self.assertEqual(r['identifiers'], {})
if r['external_id'] != '2026/p3178':
self.assertEqual(r['status'], 'accepted')
self.assertNotIn('decision_date', r)
def test_explicit_withdrawal_preserves_status_date_and_no_pdf(self):
rows, _, _ = self.parse()
row, = [r for r in rows if r['external_id'] == '2026/p3178']
self.assertEqual(row['status'], 'withdrawn')
self.assertEqual(row['metadata']['withdrawal_date'], '2026-06-08')
self.assertNotIn('decision_date', row)
self.assertEqual(row['raw_decision'], 'Withdrawn June 8, 2026')
self.assertNotIn('paper_url', row['metadata'])
self.assertEqual(row['metadata']['publication_state'], 'withdrawn')
self.assertEqual(sum(r['status'] == 'accepted' for r in rows), 638)
def test_withdrawal_ingestion_retains_date_precision_without_invented_acceptance(self):
rows, _, _ = self.parse()
row, = [r for r in rows if r['external_id'] == '2026/p3178']
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp); path = root/'withdrawn.jsonl'; db = root/'sample.sqlite'
path.write_text(json.dumps(row, ensure_ascii=False)+'\n')
path.with_suffix('.manifest.json').write_text(json.dumps({
'source': 'aamas_proceedings', 'list_url': aamas2026.URL,
'venue': 'AAMAS', 'year': 2026, 'track': row['track'],
'count': 1, 'status': 'partial', 'missing_abstract_count': 1,
'file_sha256': hashlib.sha256(path.read_bytes()).hexdigest()}))
ingest_file(db, path)
with sqlite3.connect(db) as c:
self.assertEqual(c.execute('SELECT status,raw_value,decision_date FROM decisions').fetchall(),
[('withdrawn', 'Withdrawn June 8, 2026', None)])
metadata = json.loads(c.execute('SELECT metadata_json FROM source_records').fetchone()[0])
self.assertEqual(metadata['withdrawal_date'], '2026-06-08')
self.assertEqual(metadata['decision_date_precision'], 'day')
self.assertEqual(c.execute('PRAGMA foreign_key_check').fetchall(), [])
def test_retraction_is_not_accepted_or_withdrawn_and_retains_date(self):
rows, _, held = self.parse()
self.assertNotIn('2026/p238', {r['external_id'] for r in rows})
h, = held
self.assertEqual(h['publication_state'], 'retracted')
self.assertEqual(h['retraction_date'], '2026-06-08')
self.assertEqual(h['raw_publication_state'], 'Retracted June 8, 2026')
self.assertNotIn('status', h)
self.assertNotIn('paper_url', h['metadata'])
self.assertEqual(h['metadata']['source_evidence'], EVIDENCE)
def test_tracks_formats_and_prior_decisions_are_not_conflated(self):
rows, _, _ = self.parse()
counts = {t: sum(r['track'] == t for r in rows) for t in {r['track'] for r in rows}}
self.assertEqual(counts, {'proceedings_unspecified': 522, 'aaai_transfer': 19,
'blue_sky': 17, 'doctoral': 34, 'demo': 44, 'jaamas': 3})
for row in rows:
self.assertEqual(row['tags'][0]['namespace'], 'aamas_proceedings:publication_format')
if row['track'] == 'aaai_transfer':
self.assertIn('none inferred', row['metadata']['prior_submission_note'])
self.assertNotIn('decision_events', row)
if row['track'] == 'jaamas':
self.assertEqual(row['metadata']['publication_format'], 'journal_presentation')
self.assertIn('not another independent', row['metadata']['track_scope_note'])
def test_refuses_changed_year_section_page_link_author_and_retraction(self):
html = FIXTURE['contents']
replacements = [('AAMAS 2026:', 'AAMAS 2027:'),
('name="R" id="R"></a><font color="#010101">Research Paper Track',
'name="R" id="R"></a><font color="#010101">Workshop Track'),
('(Page 4)', '(Page 1)'),
('../pdfs/HQQZ1937.pdf', 'https://other.example/paper.pdf'),
('Michael Wooldridge <i>', '<i>'),
('Retracted June 8, 2026', 'Withdrawn June 8, 2026')]
for old, new in replacements:
self.assertIn(old, html)
with self.subTest(change=old), self.assertRaises(ValueError):
self.parse(html.replace(old, new, 1))
def test_frozen_collection_is_partial_with_full_held_evidence(self):
with tempfile.TemporaryDirectory() as tmp, patch.object(aamas2026, 'fetch', side_effect=AssertionError('No HTTP')):
root = Path(tmp)
report = aamas.collect(2026, root/'out', snapshots=self.snapshots(root/'source'))
self.assertEqual(report['records'], 639)
self.assertEqual(report['status_counts'], {'accepted': 638, 'withdrawn': 1})
self.assertEqual(len(report['files']), 6)
self.assertEqual(len(report['held_publications']), 1)
self.assertFalse(report['database_written'])
self.assertFalse(report['pdfs_downloaded'])
for m in report['files']:
self.assertEqual(m['status'], 'partial')
self.assertEqual(m['missing_abstract_count'], m['count'])
self.assertEqual(hashlib.sha256(Path(m['file']).read_bytes()).hexdigest(), m['file_sha256'])
self.assertTrue((root/'out/aamas-proceedings-2026.json').is_file())
def test_frozen_response_rejects_tamper_unsafe_path_status_and_symlink(self):
for mode in ('tamper', 'path', 'status', 'symlink'):
with self.subTest(mode=mode), tempfile.TemporaryDirectory() as tmp:
root = Path(tmp); source = self.snapshots(root/'source')
r = json.loads((source/'receipts.json').read_text())
if mode == 'tamper':
(source/'contents.html').write_text('bad')
elif mode == 'path':
r['receipts'][0]['file'] = '../outside.html'
elif mode == 'status':
r['receipts'][0]['status'] = 403
else:
(root/'outside.html').write_text(FIXTURE['contents'])
(source/'contents.html').unlink()
(source/'contents.html').symlink_to(root/'outside.html')
(source/'receipts.json').write_text(json.dumps(r))
with self.assertRaises(ValueError):
aamas.collect(2026, root/'out', snapshots=source)
self.assertFalse((root/'out/aamas-proceedings-2026.json').exists())
def test_live_mode_fetches_only_html_and_preserves_receipt(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp); cache = root/'cache'; cache.mkdir()
receipt = {'retrieved_at': EVIDENCE['observed_at'], 'url': aamas2026.URL}
(cache/hashlib.sha256(aamas2026.URL.encode()).hexdigest()).with_suffix('.json').write_text(json.dumps(receipt))
with patch.object(aamas2026, 'fetch', return_value=FIXTURE['contents'].encode()) as fetch:
report = aamas.collect(2026, root/'out', cache=cache)
fetch.assert_called_once_with(aamas2026.URL, cache, 8*1024**2, delay=1)
self.assertEqual(report['source_receipts'][0]['response_receipt'], receipt)
def test_frozen_fixture_is_original_hashed_response(self):
r, = FIXTURE['receipts']['receipts']
self.assertEqual(hashlib.sha256(FIXTURE['contents'].encode()).hexdigest(), r['sha256'])
self.assertEqual(r['bytes'], len(FIXTURE['contents'].encode()))
+1 -1
View File
@@ -99,7 +99,7 @@ class AamasProceedingsTests(unittest.TestCase):
aamas.collect(2012, root/'out', snapshots=source)
self.assertFalse((root/'out/aamas-proceedings-2012.json').exists())
with self.assertRaises(ValueError):
aamas.collect(2026, root/'future', snapshots=source)
aamas.collect(2027, root/'future', snapshots=source)
self.assertFalse((root/'future').exists())
def test_ids_colliding_across_sections_do_not_produce_a_completed_collection(self):
+148
View File
@@ -0,0 +1,148 @@
import gzip
import hashlib
import json
import os
from pathlib import Path
import tempfile
import unittest
from unittest.mock import patch
from paper_atlas.audits.source_identity import audit, classify, load_inputs
from paper_atlas.postgres.client import ReadConnection
def record(**updates):
row = dict(source='reviewed_program', external_id='2026/forum-a',
title='A sufficiently specific scientific paper title', authors=['Jane Doe', 'John Smith'],
venue='NeurIPS', year=2026, track='main', status='accepted', identifiers={},
source_record_hits=[], identifier_hits=[], title_candidate_ids=[])
row.update(updates)
return row
def write_input(root, rows):
path = root / 'source.jsonl'
raw = b''.join((json.dumps(row) + '\n').encode() for row in rows)
path.write_bytes(raw)
manifest = {k: rows[0][k] for k in ('source', 'venue', 'year', 'track')}
manifest.update(count=len(rows), file_sha256=hashlib.sha256(raw).hexdigest(),
file='/ignored/untrusted/location.jsonl', status='partial')
path.with_suffix('.manifest.json').write_text(json.dumps(manifest))
return path
class CandidateTests(unittest.TestCase):
def test_duplicate_names_do_not_equal_distinct_author_multiset(self):
row = record(authors=['Jane Doe', 'Jane Doe'], title_candidate_ids=[7])
result = classify(row, {7: {'title': row['title'], 'authors': ['Jane Doe']}})
self.assertEqual(result['kind'], 'partial_author_overlap_requires_review')
self.assertIn('duplicate_normalized_author_names', result['flags'])
self.assertFalse(result['comparisons'][0]['nonempty_author_multiset_equal'])
def test_arxiv_author_representation_and_order_match_but_never_approve(self):
row = record(title_candidate_ids=[7])
result = classify(row, {7: {'title': row['title'], 'authors': [['Smith', 'John', ''], ['Doe', 'Jane', '']]}})
self.assertEqual(result['kind'], 'one_exact_title_author_multiset_requires_review')
self.assertEqual(result['decision'], 'not_approved_for_import')
def test_binding_conflict_overrides_existing_source(self):
row = record(source_record_hits=[{'paper_id': 7}], identifier_hits=[{'paper_id': 8}])
entities = {pid: {'title': row['title'], 'authors': row['authors']} for pid in (7, 8)}
self.assertEqual(classify(row, entities)['kind'], 'conflicting_existing_bindings_hold')
def test_wrong_doi_binding_retains_author_title_disagreement(self):
row = record(identifier_hits=[{'paper_id': 7}])
result = classify(row, {7: {'title': 'Completely different work', 'authors': ['Somebody Else']}})
self.assertEqual(result['kind'], 'existing_identifier_binding_requires_review')
self.assertFalse(result['comparisons'][0]['normalized_title_equal'])
self.assertEqual(result['comparisons'][0]['author_name_overlap'], [])
def test_no_hit_is_not_novelty_and_missing_authors_never_agree(self):
self.assertEqual(classify(record(), {})['kind'], 'no_exact_match_not_proof_of_novelty')
row = record(authors=[], title_candidate_ids=[7])
result = classify(row, {7: {'title': row['title'], 'authors': []}})
self.assertEqual(result['kind'], 'no_author_agreement_hold')
def test_title_candidate_cap_is_explicit(self):
row = record(title_candidate_ids=list(range(21)))
entities = {pid: {'title': row['title'], 'authors': row['authors']} for pid in range(21)}
self.assertTrue(classify(row, entities)['title_candidates_truncated'])
self.assertEqual(classify(row, entities)['kind'], 'title_candidate_limit_reached_hold')
class InputTests(unittest.TestCase):
def setUp(self):
self.temp = tempfile.TemporaryDirectory()
self.addCleanup(self.temp.cleanup)
self.root = Path(self.temp.name)
def test_raw_line_hash_and_manifest_path_not_followed(self):
path = write_input(self.root, [record()])
rows, inputs = load_inputs([path])
self.assertEqual(rows[0]['raw_line_sha256'], hashlib.sha256(path.read_bytes()).hexdigest())
self.assertEqual(inputs[0]['count'], 1)
def test_hash_tamper_rejected_before_database_connection(self):
path = write_input(self.root, [record()])
path.write_bytes(path.read_bytes().replace(b'Jane Doe', b'Jane Roe'))
with patch('paper_atlas.audits.source_identity.ReadConnection') as connection:
with self.assertRaisesRegex(ValueError, 'hash mismatch'):
audit([path], self.root / 'out', pg_service='test', pg_schema='research')
connection.assert_not_called()
def test_manifest_scope_and_count_tamper_and_duplicate_sources(self):
path = write_input(self.root, [record()])
manifest_path = path.with_suffix('.manifest.json')
manifest = json.loads(manifest_path.read_text())
for key, value in [('year', 2025), ('count', 2)]:
altered = dict(manifest, **{key: value})
manifest_path.write_text(json.dumps(altered))
with self.assertRaises(ValueError):
load_inputs([path])
manifest_path.write_text(json.dumps(manifest))
with self.assertRaisesRegex(ValueError, 'Duplicate source'):
load_inputs([path, path])
def test_existing_output_never_replayed_and_failure_not_completion(self):
path = write_input(self.root, [record()])
out = self.root / 'out'
with patch('paper_atlas.audits.source_identity.ReadConnection', side_effect=RuntimeError('unavailable')):
with self.assertRaises(RuntimeError):
audit([path], out, pg_service='test', pg_schema='research')
self.assertTrue((out / 'failed.json').exists())
self.assertFalse((out / 'postgresql-preflight.json').exists())
with self.assertRaises(FileExistsError):
audit([path], out, pg_service='test', pg_schema='research')
@unittest.skipUnless(os.environ.get('PAPER_ATLAS_TEST_PG_SERVICE'), 'Requires the authorized remote PostgreSQL service')
class ReadOnlyIntegrationTests(unittest.TestCase):
def test_existing_binding_full_evidence_and_no_import_approval(self):
service = os.environ['PAPER_ATLAS_TEST_PG_SERVICE']
connection = ReadConnection(service, 'research')
try:
self.assertEqual(connection.execute('SHOW transaction_read_only').fetchone()[0], 'on')
hit = connection.execute("SELECT value,paper_id FROM identifiers WHERE scheme='arxiv' ORDER BY value LIMIT 1").fetchone()
self.assertIsNotNone(hit)
paper = connection.execute('SELECT title,authors_json FROM papers WHERE id=?', (hit['paper_id'],)).fetchone()
finally:
connection.close()
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
path = write_input(root, [record(title=paper['title'], authors=json.loads(paper['authors_json']),
identifiers={'arxiv': hit['value']})])
report = audit([path], root / 'out', pg_service=service, pg_schema='research')
self.assertTrue(report['transaction_read_only'])
self.assertFalse(report['database_written'])
self.assertEqual(report['approved_for_import'], 0)
row, = report['entries']
self.assertIn(hit['paper_id'], [r['paper_id'] for r in row['identifier_hits']])
shard = report['entities'][str(hit['paper_id'])]
raw = (root / 'out' / shard['file']).read_bytes()
self.assertEqual(hashlib.sha256(raw).hexdigest(), shard['sha256'])
packet = json.loads(gzip.decompress(raw))
self.assertEqual(packet['paper']['id'], hit['paper_id'])
self.assertEqual(packet['paper']['title'], paper['title'])
self.assertEqual(packet['paper']['authors_json'], paper['authors_json'])
self.assertIn('attempts', packet)
self.assertTrue((root / 'out/postgresql-preflight.json').is_file())