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codex-bot b5c0618be5 Handle standalone italic author blocks in the historical archive
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2026-11-09 16:24:42 +08:00
codex-bot 81864e48ae Preserve complete fragmented ICLR 2014 author paragraphs
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2026-11-09 16:19:19 +08:00
codex-bot 348ebe0695 Collect archived ICLR accepted lists with track and presentation evidence
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Zayden-Jung 02a408ba8f Merge pull request '保留 AAMAS 发表来源的同届 DOI 投稿身份' (#39) from codex/aamas-publication-identity into main
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Reviewed-on: #39
2026-11-09 06:43:15 +00:00
codex-bot 714f745bd5 Assert normalized identity tuples and exact negative-status boundaries
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2026-11-09 14:13:12 +08:00
Zayden-Jung cc78e837d2 Merge pull request '按发表形式采集 AAMAS 官方论文集' (#38) from codex/aamas-proceedings into main
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Reviewed-on: #38
2026-11-09 05:52:57 +00:00
codex-bot c0b2146ae8 Recognize AAMAS publisher DOI identities within submission scopes
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codex-bot ae88367fac Scope AAMAS tags to their exact source namespace
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2026-11-09 13:31:46 +08:00
codex-bot a305d00c75 Collect evidenced AAMAS proceedings metadata by publication format
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2026-11-09 13:27:23 +08:00
Zayden-Jung 57fcfc7693 Merge pull request '按官方证据识别早期 ICML 与 IROS 主系列' (#37) from codex/historical-primary-series into main
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Reviewed-on: #37
2026-11-09 05:19:49 +00:00
Zayden-Jung a07b1e42a8 Merge pull request '修正早期 ACL 来源误匹配并记录官方目录缺口' (#36) from codex/history-source-scope into main
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Reviewed-on: #36
2026-11-09 05:19:43 +00:00
codex-bot 7c6f4c9f1d Recognize evidenced early ICML and IROS primary editions
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codex-bot 3f0ac694a0 Correct early ACL source candidates and record official index limits
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Zayden-Jung 32c7edd0a5 Merge pull request '核对135个历史年度缺口与候选论文集来源' (#35) from codex/historical-gaps into main
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Reviewed-on: #35
2026-11-08 17:37:12 +00:00
Zayden-Jung 658d799334 Merge pull request '封装早期WWW档案采集并核实逐条poster证据' (#32) from codex/www-archive into main
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Reviewed-on: #32
2026-11-08 17:37:03 +00:00
codex-bot 53fbe9c75c Record current historical year gaps and candidate source volumes
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codex-bot dac6edbe1e Merge remote-tracking branch 'origin/main' into codex/www-archive
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# Conflicts:
#	README.md
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Zayden-Jung 7a674ac797 Merge pull request '按证据修正投稿轨道并保护后续来源刷新' (#34) from codex/edition-tracks into main
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Reviewed-on: #34
2026-11-08 16:23:37 +00:00
codex-bot eacc1e3292 Resolve reviewed WWW poster entries with canonical page evidence
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codex-bot 2275bc7530 Merge remote-tracking branch 'origin/main' into codex/www-archive
# Conflicts:
#	README.md
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codex-bot d2c016e309 Reject target conflicts and post-application scope evidence drift
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codex-bot ea3393144d Merge remote-tracking branch 'origin/main' into codex/edition-tracks 2026-11-08 23:48:02 +08:00
codex-bot 7035cf33b9 Correct existing attempt tracks with bound evidence and refresh guards
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2026-11-08 23:46:37 +08:00
Zayden-Jung 60726a8c6b Merge pull request '核实 IJCAI 两届 345 条非 main 分类与唯一目录缺项' (#33) from codex/ijcai-sections into main
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2026-11-08 15:44:02 +00:00
codex-bot a1bbd26a5c Merge remote-tracking branch 'origin/main' into codex/edition-tracks 2026-11-08 23:41:10 +08:00
Zayden-Jung 90f3fb213e Merge pull request '区分同年同轨道会议事件并显式迁移原有身份' (#30) from codex/event-identity into main
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Reviewed-on: #30
2026-11-08 15:37:08 +00:00
codex-bot f9f4d263af Expose independent event keys in integrated coverage reports
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2026-11-08 23:17:55 +08:00
codex-bot 0049b6ba84 Keep runtime integration compatible with newly merged curation tools
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# Conflicts:
#	paper_atlas/cli.py
#	paper_atlas/curation/__init__.py
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codex-bot 0133ce99d6 Preserve new workshop labels and historical edition scope from main
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# Conflicts:
#	paper_atlas/collectors/dblp_scope.py
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codex-bot 3d279cd7d8 Integrate current main coverage and public decision safeguards
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codex-bot 9040649320 Preserve full source listing totals beside ready archive subsets
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2026-11-08 21:54:43 +08:00
codex-bot 64ced7af42 Package reproducible early WWW metadata collection with explicit review holds
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codex-bot 4182070e76 Scope incremental parents to events and verify integrated write safeguards
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2026-11-08 21:04:05 +08:00
codex-bot 3c974009be Integrate optional provenance-backed paper annotations
# Conflicts:
#	README.md
#	paper_atlas/querying.py
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codex-bot 298d7c4564 Integrate independent same-year event identity
# Conflicts:
#	.gitea/workflows/check.yml
#	README.md
#	paper_atlas/cli.py
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codex-bot c7591bca0f Integrate verified joint-edition refresh protection 2026-11-08 21:00:45 +08:00
codex-bot 160137ee2d Integrate stable identities and incremental source coverage 2026-11-08 21:00:45 +08:00
codex-bot e044c63546 Bound exact event migration counts with primary-key pagination
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codex-bot c3aeee6323 Add explicit conference event identity with guarded legacy migration
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codex-bot 88c2819edd Keep legacy source refreshes in their verified joint editions
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codex-bot 866aeaf068 Read PostgreSQL mapping rows by position during joint preflight
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codex-bot c05b979b01 Bind repair execution receipts to the reviewed plan hash 2026-11-08 19:09:27 +08:00
codex-bot 3f81734e69 Repair verified joint edition membership without reimporting papers
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codex-bot adcbbb66a2 Freeze SQLite annotation fixtures before PostgreSQL migration
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codex-bot a13c535919 Require completed annotation upgrade before accepting evidence
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codex-bot 27e336eee9 Add evidence-bearing research types and retractable custom annotations
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54 changed files with 10394 additions and 25 deletions
+8
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@@ -48,7 +48,13 @@ jobs:
outside.mkdir()
subprocess.run([str(venv/'bin/paper-atlas'),'--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','cvf','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','www-archive','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','aamas-proceedings','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','iclr-archive','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','postgres','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','edition-tracks','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','joint-editions','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','event-identity','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','import','records','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','import','arxiv','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','backfill','--help'],cwd=outside,check=True)
@@ -60,5 +66,7 @@ jobs:
smoke = "from paper_atlas.db.store import Store; from paper_atlas.config import DEFAULT_REGISTRY; import json; assert {'COLM','MM','MLSys'} <= {v['acronym'] for v in json.loads(DEFAULT_REGISTRY.read_text())['venues']}; s=Store('installed.sqlite'); s.conn.close()"
subprocess.run([python,'-I','-B','-c',smoke],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','query','--db','installed.sqlite','--stats'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','annotate','init','--db','installed.sqlite'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','annotate','list','--db','installed.sqlite','--paper','1'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','histories','--db','installed.sqlite','--examples','0'],cwd=outside,check=True)
PY
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@@ -6,6 +6,8 @@ Paper Atlas 将 arXiv、AI 会议论文集及公开投稿决定整理到可追
项目仍在建设中。候选范围包含 43 个会议(含 ACM MM、MLSys),尚未完成全部历史数据和最终去重复核。实际进度以数据库、来源清单和覆盖报告为准,而不是仓库文件数量。
历史 ICLR 2014–2016 官方录用页由 `collect iclr-archive` 适配,保留主会/workshop及重复展示证据;运行和身份核验边界见 [历史档案说明](docs/coverage/iclr-archive-2014-2016.md)。
## 项目结构
```text
@@ -60,6 +62,10 @@ paper-atlas collect colm --cache /data/paper-index/raw/http-cache \
--out /data/paper-index/collected
```
早期主系列的Workshop名称按[ICML/IROS精确届次证据](docs/coverage/historical-primary-series-2026-11-09.md)识别,保留原名与范围证据;代码支持不代表已补齐生产数据。
AAMAS 的[官方论文集采集器](docs/aamas-proceedings.md)目前核验了 2012 版式,可从缓存或已校验快照采集标题、作者及页面提供的摘要;发表形式单独保存,全文/扩展摘要中未明确的投稿 track 保持待明确,不根据会话主题推定主会轨道。
`paper-atlas collect --help` 查看来源;`paper-atlas import --help` 查看导入方式。完整批次步骤见[使用指南](docs/usage.md)。
共享实例名为 `foundry-postgres`,数据位于 `foundry_data` 库的 `research` schema;其他项目可按权限复用同一组表。库名通过 libpq service 配置、schema 通过 search_path 或 `--pg-schema` 指定,不写死在查询中。PostgreSQL 凭据放在服务器权限为 `0600` 的 libpq service 文件中;命令行只使用服务名称。`paper-atlas maintain postgres --help` 提供迁移入口:先完整核验 21 张业务表,再发布目标 schema。SQLite FTS5 内部表由 PostgreSQL GIN 索引替代。切换后 SQLite 为只读备份;`import records`、`import arxiv` 和 `maintain backfill` 使用 `--pg-service foundry-research` 写入主库,整个写入会话只允许一个协调写入者,会议文件失败时整体回滚并保留失败批次记录。
@@ -87,3 +93,12 @@ paper-atlas collect colm --cache /data/paper-index/raw/http-cache \
CI 在已授权的远程 runner 上运行测试、构建 wheel,并从源码目录外验证安装后的命令及随包资源。数据库全量去重和覆盖率是独立的数据验收步骤,不因代码测试通过而自动完成。
开发通过工作分支和 PR 交付,由用户手动合并。
早期WWW档案的可重放元数据采集、论文/海报分轨与待核查条目见 [WWW档案采集](docs/www-archive.md)。
历史联合会议的既有届次归属可通过 [`maintain joint-editions`](docs/joint-editions.md) 先只读规划,再按计划哈希执行;保留论文与投稿决定来源,不重导入。
同年多届的 `event_key`、显式迁移、旧文件刷新与查询边界见 [会议事件身份](docs/event-identity.md)。
研究类型与自定义标签可通过 [`annotate`](docs/annotations.md) 显式初始化、添加和撤回;两者独立查询,保留证据及完整更正历史,不从会议轨道推断研究类型。
整合后的运行版本依赖、交互约束和生产切换顺序见 [运行版本整合](docs/research-runtime.md)。
已导入整卷的逐条轨道修正见 [edition-tracks 维护流程](docs/edition-tracks.md):按完整证据生成只读计划,保留原投稿和决定 ID,事务性修正 edition、标识与覆盖,并防止旧整卷刷新覆盖分类。
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# AAMAS 官方论文集元数据
`paper_atlas.collectors.aamas` 是按需运行的采集适配器,通过统一入口 `collect aamas-proceedings` 使用。目前只支持已独立核验的 **AAMAS 2012** HTML 版式;其他年份需先核对官方目录和逐篇结构,再增加适配,不能仅替换年份。
## 来源与范围
[官方论文集介绍](https://www.ifaamas.org/Proceedings/aamas2012/)及其 Full Papers、Extended Abstracts、Demos、Doctorial Consortium Abstracts 四个栏目分别列出 136、146、28、24 条,共 334 条。旧 DBLP 候选卷的 310 条不能替代这四类官方目录,也不能全部标记为主会全文。栏目数量来自 2026-11-09 冻结的原始页面;页面结构或数量发生变化时,采集器停止,留待重新核验。
采集标题、逐篇作者、页面实际提供的摘要、官方条目 ID、目录锚点和 PDF 地址。**只保存 PDF 链接,不下载 PDF。** 全文页面的摘要藏在标题链接内部的 `abstract` 元素,作者链接里的 “has N papers” 是界面徽标,二者不会混入标题或姓名。未提供的摘要保存为 `null`,不会用标题、说明文字或其他论文填充。
官方介绍说明了 general、robotics、virtual agents、innovative applications 等投稿轨道,但逐篇目录的主题会话不能独立证明某篇论文的投稿轨道。因此全文和扩展摘要均使用 `proceedings_unspecified`;演示、博士栏目使用 `demo`、`doctoral`。发表形式保留在 `metadata.publication_format` 和 `aamas_proceedings:publication_format` 标签中,会话原文单独保存。它们不是研究类型标注,也不会写入自定义 annotation。
目录条目仅提供发表录用证据,不是原始决定信。`observed_at` 是页面采集时间,不能当作 2012 年的决定日期;官方介绍中的投稿、撤稿、录用汇总数不能识别逐篇拒稿或撤稿,采集器不会由总量相减生成这些决定。
## 运行
在已确认的远程运行环境中,使用 HTTP 缓存采集:
```sh
paper-atlas collect aamas-proceedings --year 2012 \
--cache /data/paper-index/cache/aamas \
--out /data/paper-index/collected/aamas-2012
```
也可使用已冻结的官方页面:
```sh
paper-atlas collect aamas-proceedings --year 2012 \
--snapshots /data/paper-index/collected/historical-next-source-evidence-v1 \
--out /data/paper-index/collected/aamas-2012
```
快照目录需含 `receipts.json`,其中每个响应包含原始 `url`、HTTP `status`、相对 `file`、`bytes`、`sha256` 和 `finished_at`。要求五个准确官方 URL 均唯一匹配且返回 200;验证全部字节数和哈希后才解析,不接受目录穿越或绝对文件路径。快照中其他来源的响应不会被当成 AAMAS 页面。
输出为按数据库 track 分组的三个 JSONL 文件和对应 manifest、五份原始 HTML 证据,以及最后写出的 `aamas-proceedings-2012.json` 采集报告。锁文件避免同一输出目录并发运行。manifest 始终为 `partial`,记录发表形式数量和缺失摘要数;**采集命令不连接数据库,也不导入。**
## 复核与恢复
每条记录携带对应官方页面的 URL、采集时间、字节数、SHA-256 与输出内证据路径。重新运行前先检查已有采集报告和文件哈希;采集中断不等于主库已导入,报告缺失或哈希不一致的目录不能直接作为导入队列。输出中的原始证据应随文件一起保存。
生产导入前仍需单独与主库核验稳定标识、标题、作者及已有投稿,按证据补充 DOI/arXiv 等标识;目录页上的作者计数徽标和会话 ID 不能作为这些标识。需要另建经过核验的增量清单、保护旧历史,完成独立验收后才能计入覆盖。跨来源同一论文不得仅因同题就新增或合并投稿。
本功能的代码、测试或采集成功均不代表 AAMAS 2012 已导入生产,也不证明拒稿全集完整。全库最终去重、摘要和来源覆盖验收属于独立后续阶段。
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# Research types and custom annotations
Research type describes a claimed characteristic of the work (for example a survey,
benchmark, empirical study or replication). It is independent of topic, paper length,
conference track, presentation format and acceptance status. No type is inferred from
those fields. Multiple source-specific or human classifications may coexist; no
cross-platform vocabulary mapping or automatic classifier is provided.
`annotation_events` stores both kinds with an explicit `kind` discriminator:
`research_type` and `tag` are separate domains, even when namespace/value strings
happen to coincide. Existing platform labels remain in `tags` / `paper_tags`.
Each assertion carries namespace, value, actor, reason, evidence key, optional source
record and evidence URL, and the time it was recorded. This is observation time, not
paper publication time or a conference decision date.
Values are not forced into a global taxonomy: `custom:method=empirical` and
`platform:declared_type=empirical` retain separate provenance. An explicit platform
assertion API requires a source record belonging to that paper and matching the
namespace prefix. The manual CLI only accepts `custom:*`, and cannot retract platform
assertions. No source type has been automatically assigned to existing papers.
## Initialize explicitly
On the published PostgreSQL dataset, using its protected service file:
```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas annotate init \
--pg-service foundry-research --pg-schema research
```
This creates one optional table, its indexes, and an upgrade marker in one transaction,
using the existing dataset writer lock. It does not copy data, change existing papers
or decisions, or create a PostgreSQL instance. Repeating it is safe; an unexplained
pre-existing table/marker mismatch fails closed. Readers and ordinary imports do not
install the extension. Legacy datasets remain readable. A SQLite **sample** uses
`--db sample.sqlite`; the cutover SQLite backup remains protected against writes.
## Add and retract evidence
Use the canonical paper ID returned by `query`. For a reviewed classification:
```sh
paper-atlas annotate assert --pg-service foundry-research --pg-schema research \
--paper "$PAPER_ID" --kind research_type --namespace custom:method \
--value empirical --evidence-key manual:abstract-review \
--actor reviewer --reason 'Classified from the explicitly described study design' \
--request-id "$REQUEST_ID"
```
`$REQUEST_ID` must be a new, stable identifier for this action (for example a UUID).
Retry with the same request ID and identical content after an interrupted response;
it returns the original event ID. Reusing that ID with changed content is rejected.
A topic annotation uses `--kind tag --namespace custom:topic --value robotics` instead.
Optional `--source-record` and `--evidence-url` attach additional evidence; the source
record must belong to this paper. URLs are retained as evidence and are not fetched.
To withdraw one particular assertion, use its returned event ID:
```sh
paper-atlas annotate retract --pg-service foundry-research --pg-schema research \
--event "$EVENT_ID" --actor reviewer --reason 'Classification corrected after review' \
--request-id "$RETRACTION_REQUEST_ID"
```
Retraction adds an event referencing that assertion, preserving its original content.
It does not remove another contributor's assertion of the same label, platform tags,
source metadata or submission/decision history. A retracted assertion can be asserted
again with a new request ID and evidence; it is a new observation. The API does not
update or delete past annotation events. Database administrators still control direct
SQL access. Work reviewed as the same paper may subsequently be merged by the existing
identity workflow: annotation IDs, original paper IDs, evidence and retraction links
are retained while the canonical paper reference follows the surviving entity.
## Query and analyze
```sh
paper-atlas query --pg-service foundry-research --pg-schema research \
--research-type custom:method=empirical
paper-atlas query --pg-service foundry-research --pg-schema research \
--tag custom:topic=robotics
paper-atlas query --pg-service foundry-research --pg-schema research \
--paper "$PAPER_ID" --annotation-history
paper-atlas annotate list --pg-service foundry-research --pg-schema research \
--paper "$PAPER_ID" --history
```
`--tag` includes original platform labels and active annotation tags. It never matches
research types. `--research-type` matches active type assertions only. Paper details
return separate `tags` (existing provenance), `annotation_tags`, and `research_types`;
`--annotation-history` additionally includes retractions. A missing extension yields
empty annotation results rather than changing the database.
For direct SQL analysis, active research-type evidence is:
```sql
SELECT a.* FROM research.annotation_events a
WHERE a.kind = 'research_type' AND a.retracts_id IS NULL
AND NOT EXISTS (SELECT 1 FROM research.annotation_events r WHERE r.retracts_id = a.id);
```
Several independent assertions can support one label; count distinct papers/labels
when appropriate rather than counting evidence rows as papers. Namespaces stay
separate. Standard paper queries decode the PostgreSQL text codec; direct SQL consumers
must honor the dataset's documented codec, including NUL/SOH values. SQLite-to-PostgreSQL
migration recognizes an installed annotation extension and verifies its full row hashes,
constraints and identity sequence along with the original business tables. An old
21-table snapshot stays a 21-table migration; no synthetic annotations are generated.
+4
View File
@@ -190,3 +190,7 @@ WWW早期逐来源核查见 `www-early-proceedings-2026-11-08.json`:1995春季
WWW事件标识生产迁移已独立验收(报告SHA `f5dbb8a8`):保留1399个原届次字段及IDs、59个Fall投稿和完整全库历史哈希。服务器已缓存46个官方HTML来源(约223KB),只作为后续维护式采集器的输入;尚未补导早期WWW论文,也未启用可选注解表。
IJCAI 联办届次的逐条后续核查见 [2018/2022 分区与目录差集](ijcai-sections-2026-11-08.md) 和 [稳定 ID 映射](ijcai-sections-2026-11-08.json)。已定位 345 条非 main 分类及 2022 官方 HTML 缺失但官方文件仍存在的一条记录;生产分类尚未修正,不能把整卷数量作为 main 覆盖率。
2026年11月9日的[当前历史年度缺口核对](historical-gaps-2026-11-09.md)单列135个历史会议—年份、14个2026年度及85个经范围修正的初步候选来源年度;它使用当前生产edition/别名快照,保留原固定快照不变。年度有记录不等于逐篇、逐track或公开拒稿历史完整。
[早期NLP来源范围复核](historical-source-scope-2026-11-09.md)保留3份官方网页的响应哈希,排除4个COLING卷对ACL缺口的误匹配,并区分会议举办记录、目录可获取性与论文级覆盖;尚未导入或关闭这些年度缺口。
@@ -0,0 +1,867 @@
{
"snapshot_at": "2026-11-08 16:34:40.741334+00:00",
"scope": "Official first-pass conference-year census vs current populated editions and real aliases. Missing year means no imported attempt in that year, not missing paper count or proof all other years complete. Includes announced/nonarchival exceptions below.",
"venues": [
{
"venue": "NeurIPS",
"expected_years": 40,
"observed_expected_years": 39,
"missing_years": [
2026
],
"missing_count": 1,
"canonical_matches": [
"NeurIPS"
]
},
{
"venue": "ICML",
"expected_years": 43,
"observed_expected_years": 14,
"missing_years": [
1980,
1983,
1985,
1987,
1988,
1989,
1990,
1991,
1992,
1993,
1994,
1995,
1996,
1997,
1998,
1999,
2000,
2001,
2002,
2003,
2004,
2005,
2006,
2007,
2008,
2009,
2010,
2011,
2012
],
"missing_count": 29,
"canonical_matches": [
"ICML"
]
},
{
"venue": "ICLR",
"expected_years": 14,
"observed_expected_years": 11,
"missing_years": [
2014,
2015,
2016
],
"missing_count": 3,
"canonical_matches": [
"ICLR"
]
},
{
"venue": "COLM",
"expected_years": 3,
"observed_expected_years": 3,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"COLM"
]
},
{
"venue": "COLT",
"expected_years": 39,
"observed_expected_years": 39,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"COLT"
]
},
{
"venue": "AISTATS",
"expected_years": 29,
"observed_expected_years": 25,
"missing_years": [
1985,
1989,
1991,
1993
],
"missing_count": 4,
"canonical_matches": [
"AISTATS"
]
},
{
"venue": "UAI",
"expected_years": 42,
"observed_expected_years": 42,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"UAI"
]
},
{
"venue": "CLeaR",
"expected_years": 5,
"observed_expected_years": 5,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"CLEAR"
]
},
{
"venue": "ACL",
"expected_years": 64,
"observed_expected_years": 48,
"missing_years": [
1963,
1964,
1965,
1966,
1967,
1968,
1969,
1970,
1971,
1972,
1973,
1974,
1975,
1976,
1977,
1978
],
"missing_count": 16,
"canonical_matches": [
"ACL",
"ACL+COLING",
"ACL+EACL"
]
},
{
"venue": "EMNLP",
"expected_years": 31,
"observed_expected_years": 31,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"CoNLL+EMNLP",
"EMNLP"
]
},
{
"venue": "NAACL",
"expected_years": 18,
"observed_expected_years": 18,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"NAACL"
]
},
{
"venue": "EACL",
"expected_years": 19,
"observed_expected_years": 19,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"ACL+EACL",
"EACL"
]
},
{
"venue": "COLING",
"expected_years": 31,
"observed_expected_years": 28,
"missing_years": [
1971,
1976,
1978
],
"missing_count": 3,
"canonical_matches": [
"ACL+COLING",
"COLING",
"COLING+LREC"
]
},
{
"venue": "CoNLL",
"expected_years": 30,
"observed_expected_years": 30,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"CoNLL",
"CoNLL+EMNLP"
]
},
{
"venue": "CVPR",
"expected_years": 39,
"observed_expected_years": 14,
"missing_years": [
1983,
1985,
1986,
1988,
1989,
1991,
1992,
1993,
1994,
1996,
1997,
1998,
1999,
2000,
2001,
2003,
2004,
2005,
2006,
2007,
2008,
2009,
2010,
2011,
2012
],
"missing_count": 25,
"canonical_matches": [
"CVPR"
]
},
{
"venue": "ICCV",
"expected_years": 20,
"observed_expected_years": 7,
"missing_years": [
1987,
1988,
1990,
1993,
1995,
1998,
1999,
2001,
2003,
2005,
2007,
2009,
2011
],
"missing_count": 13,
"canonical_matches": [
"ICCV"
]
},
{
"venue": "ECCV",
"expected_years": 19,
"observed_expected_years": 4,
"missing_years": [
1990,
1992,
1994,
1996,
1998,
2000,
2002,
2004,
2006,
2008,
2010,
2012,
2014,
2016,
2026
],
"missing_count": 15,
"canonical_matches": [
"ECCV"
]
},
{
"venue": "AAAI",
"expected_years": 40,
"observed_expected_years": 40,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"AAAI",
"AAAI+IAAI"
]
},
{
"venue": "IJCAI",
"expected_years": 35,
"observed_expected_years": 35,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"ECAI+IJCAI",
"IJCAI"
]
},
{
"venue": "ECAI",
"expected_years": 29,
"observed_expected_years": 27,
"missing_years": [
1974,
1980
],
"missing_count": 2,
"canonical_matches": [
"ECAI",
"ECAI+IJCAI"
]
},
{
"venue": "KDD",
"expected_years": 32,
"observed_expected_years": 32,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"KDD"
]
},
{
"venue": "SIGIR",
"expected_years": 50,
"observed_expected_years": 50,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"SIGIR"
]
},
{
"venue": "WWW",
"expected_years": 33,
"observed_expected_years": 27,
"missing_years": [
1994,
1996,
1997,
1998,
1999,
2000
],
"missing_count": 6,
"canonical_matches": [
"WWW"
]
},
{
"venue": "WSDM",
"expected_years": 19,
"observed_expected_years": 19,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"WSDM"
]
},
{
"venue": "RecSys",
"expected_years": 20,
"observed_expected_years": 19,
"missing_years": [
2026
],
"missing_count": 1,
"canonical_matches": [
"RecSys"
]
},
{
"venue": "CIKM",
"expected_years": 35,
"observed_expected_years": 34,
"missing_years": [
2026
],
"missing_count": 1,
"canonical_matches": [
"CIKM"
]
},
{
"venue": "ICDM",
"expected_years": 26,
"observed_expected_years": 25,
"missing_years": [
2026
],
"missing_count": 1,
"canonical_matches": [
"ICDM"
]
},
{
"venue": "SDM",
"expected_years": 26,
"observed_expected_years": 25,
"missing_years": [
2026
],
"missing_count": 1,
"canonical_matches": [
"SDM"
]
},
{
"venue": "ECML-PKDD",
"expected_years": 38,
"observed_expected_years": 33,
"missing_years": [
1986,
1987,
1988,
1989,
1991
],
"missing_count": 5,
"canonical_matches": [
"ECML",
"ECML-PKDD",
"PKDD"
]
},
{
"venue": "ICRA",
"expected_years": 43,
"observed_expected_years": 43,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"ICRA"
]
},
{
"venue": "IROS",
"expected_years": 39,
"observed_expected_years": 35,
"missing_years": [
1988,
1989,
1990,
2026
],
"missing_count": 4,
"canonical_matches": [
"IROS"
]
},
{
"venue": "RSS",
"expected_years": 22,
"observed_expected_years": 20,
"missing_years": [
2025,
2026
],
"missing_count": 2,
"canonical_matches": [
"RSS"
]
},
{
"venue": "CoRL",
"expected_years": 10,
"observed_expected_years": 9,
"missing_years": [
2026
],
"missing_count": 1,
"canonical_matches": [
"CORL"
]
},
{
"venue": "ICAPS",
"expected_years": 37,
"observed_expected_years": 28,
"missing_years": [
1990,
1991,
1992,
1993,
1995,
1997,
1999,
2001,
2026
],
"missing_count": 9,
"canonical_matches": [
"AIPS",
"ICAPS"
]
},
{
"venue": "KR",
"expected_years": 23,
"observed_expected_years": 23,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"KR"
]
},
{
"venue": "AAMAS",
"expected_years": 25,
"observed_expected_years": 22,
"missing_years": [
2012,
2025,
2026
],
"missing_count": 3,
"canonical_matches": [
"AAMAS"
]
},
{
"venue": "ICASSP",
"expected_years": 51,
"observed_expected_years": 49,
"missing_years": [
1977,
2026
],
"missing_count": 2,
"canonical_matches": [
"ICASSP"
]
},
{
"venue": "INTERSPEECH",
"expected_years": 39,
"observed_expected_years": 39,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"ECST",
"EUROSPEECH",
"ICSLP",
"INTERSPEECH"
]
},
{
"venue": "ISMIR",
"expected_years": 27,
"observed_expected_years": 26,
"missing_years": [
2026
],
"missing_count": 1,
"canonical_matches": [
"ISMIR"
]
},
{
"venue": "MICCAI",
"expected_years": 29,
"observed_expected_years": 29,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"MICCAI"
]
},
{
"venue": "FAccT",
"expected_years": 9,
"observed_expected_years": 9,
"missing_years": [],
"missing_count": 0,
"canonical_matches": [
"FAccT"
]
},
{
"venue": "MLSys",
"expected_years": 9,
"observed_expected_years": 8,
"missing_years": [
2018
],
"missing_count": 1,
"canonical_matches": [
"MLSys"
]
},
{
"venue": "MM",
"expected_years": 34,
"observed_expected_years": 33,
"missing_years": [
2026
],
"missing_count": 1,
"canonical_matches": [
"MM"
]
}
],
"expected_venue_years": 1266,
"missing_venue_years": 150,
"venues_with_missing_years": 25,
"known_nonpublication_exceptions": [
{
"venue": "NeurIPS",
"year": 2026,
"reason": "announced;not in proceedings index at census"
},
{
"venue": "CoRL",
"year": 2026,
"reason": "not in publisher proceedings index at census"
},
{
"venue": "MLSys",
"year": 2018,
"reason": "first non-archival SysML meeting; not a missing formal publication volume"
}
],
"historical_missing_years_excluding_nonarchival_2018": 135,
"historical_venues_with_missing_years": 16,
"historical_gaps": [
{
"venue": "ICML",
"years": [
1980,
1983,
1985,
1987,
1988,
1989,
1990,
1991,
1992,
1993,
1994,
1995,
1996,
1997,
1998,
1999,
2000,
2001,
2002,
2003,
2004,
2005,
2006,
2007,
2008,
2009,
2010,
2011,
2012
]
},
{
"venue": "ICLR",
"years": [
2014,
2015,
2016
]
},
{
"venue": "AISTATS",
"years": [
1985,
1989,
1991,
1993
]
},
{
"venue": "ACL",
"years": [
1963,
1964,
1965,
1966,
1967,
1968,
1969,
1970,
1971,
1972,
1973,
1974,
1975,
1976,
1977,
1978
]
},
{
"venue": "COLING",
"years": [
1971,
1976,
1978
]
},
{
"venue": "CVPR",
"years": [
1983,
1985,
1986,
1988,
1989,
1991,
1992,
1993,
1994,
1996,
1997,
1998,
1999,
2000,
2001,
2003,
2004,
2005,
2006,
2007,
2008,
2009,
2010,
2011,
2012
]
},
{
"venue": "ICCV",
"years": [
1987,
1988,
1990,
1993,
1995,
1998,
1999,
2001,
2003,
2005,
2007,
2009,
2011
]
},
{
"venue": "ECCV",
"years": [
1990,
1992,
1994,
1996,
1998,
2000,
2002,
2004,
2006,
2008,
2010,
2012,
2014,
2016
]
},
{
"venue": "ECAI",
"years": [
1974,
1980
]
},
{
"venue": "WWW",
"years": [
1994,
1996,
1997,
1998,
1999,
2000
]
},
{
"venue": "ECML-PKDD",
"years": [
1986,
1987,
1988,
1989,
1991
]
},
{
"venue": "IROS",
"years": [
1988,
1989,
1990
]
},
{
"venue": "RSS",
"years": [
2025
]
},
{
"venue": "ICAPS",
"years": [
1990,
1991,
1992,
1993,
1995,
1997,
1999,
2001
]
},
{
"venue": "AAMAS",
"years": [
2012,
2025
]
},
{
"venue": "ICASSP",
"years": [
1977
]
}
],
"current_2026_gaps": 14
}
@@ -0,0 +1,58 @@
# 历史年度缺口的当前核对
生产只读快照:2026-11-08 16:34:40.741334 UTC(北京时间11月9日00:34),foundry_data/research。对比已核实的43份首轮官方会议年度清单,使用当前有投稿记录的edition及真实venue_aliases,不沿用旧固定快照的missing_years。
- 清单共1266个会议—年份位置,当前有150个位置尚无投稿记录,涉及25个目标会议。
- 其中2025年及以前136个;排除已明确非存档的SysML2018首届,剩**135个历史年度待补采或核实,涉及16个会议**。
- 另有14个2026年度待核实。已知NeurIPS2026和CoRL2026在首轮核查时尚未进入论文集索引,不能一律当已公开论文遗漏;其他年度也需逐个核实发布时间。
这些是“整年没有任何投稿记录”的数量,不是缺论文篇数,也不是完整性百分比。一个年份只有少数记录、只有公开拒稿或缺了某个track,仍会被计作“已有年度”;这些更细缺口及公开拒稿的逐年可获得性尚须继续核验。会议别名共享的联合届次不能当成两批独立论文,未见录用也不能推断拒稿。
| 会议 | 历史缺口年份数 |
| --- | ---: |
| ICML | 29 |
| CVPR | 25 |
| ACL | 16 |
| ECCV | 14 |
| ICCV | 13 |
| ICAPS | 8 |
| WWW | 6 |
| ECML-PKDD | 5 |
| AISTATS | 4 |
| ICLR、COLING、IROS | 各3 |
| ECAI、AAMAS | 各2 |
| RSS、ICASSP | 各1 |
[完整逐年结果](historical-gaps-2026-11-09.json) 保留43目标的官方预期、现有年份数、缺失年份与规范会议匹配。原始只读生产导出保存在 `/data/paper-index/collected/historical-gap-current-20261109-v1.json`。 导出SHA256 `580cdea6dd9869adafe9bc28fb75cf3854bb290ad65aa5a600d9bc368a528b93`。年度对照清单为 `docs/coverage/inventory-2026-11-08.json`;候选来源文件绑定的输入哈希与本目录缺口JSON逐字节一致。来源清单的年份和哈希沿用相应 `*-editions-2026-11-08.json`,不是本轮重新访问所有会议网站;2026发布状态需要后续更新。
## 候选来源与下一步
另一次只读目录核查在现有、已校验的DBLP快照中,为135个历史年度中的**85个**匹配到初步候选论文集,另**50个**尚未按本轮规则匹配到,需要继续识别目录键或寻找官方来源。未匹配不等于会议没举办、未出版或没有公开来源。
[候选卷清单](historical-source-candidates-2026-11-09.json) 保留卷key、标题、出版年份、原始bibliographic counts和出版者链接。初筛使用目标family映射内的四位卷key年份或卷标题唯一显式年份,再按具体会议身份复核;两位键、出版年份与会议年份差异、前身系列及其他目录命名可能漏匹配。原始计数可能含workshop、前言、索引或多个卷,**不能当可直接导入的录用论文数量**。
后续[来源范围复核](historical-source-scope-2026-11-09.md)排除了4个误归ACL的COLING卷,因此候选年度由89修正为85、未匹配年度由46增至50。原卷及排除理由保留在JSON中;135个历史年度缺口不因此改变。ACL1963–1978与COLING1971/1976/1978在当前Anthology目录未列出,继续记为来源待核实,不能一律称作已公开但漏采的论文集。
优先核查已有候选卷较集中的CVPR22年、ICCV12年、ECCV14年和ICML25年。其中ICML早期workshop名称可能属于官方主系列前身,也可能是附属workshop,须对照官方届次证据逐卷区分,不能靠标题包含workshop一刀切。所有候选须经过范围、稳定标识、重复/冲突、原始字段和覆盖预检;这一步没有导入候选卷。
## 复核方法
只读获取当前有记录的edition,不连接papers大文本或标签表:
```sql
WITH counts AS (
SELECT edition_id,count(*) AS submissions
FROM submissions GROUP BY edition_id
)
SELECT e.id,e.venue_id,v.acronym,e.year,e.track,e.event_key,counts.submissions
FROM editions e JOIN venues v ON v.id=e.venue_id
JOIN counts ON counts.edition_id=e.id ORDER BY e.id;
SELECT venue_id,alias FROM venue_aliases ORDER BY venue_id,alias;
```
逐目标取规范会议名或别名相等的edition年份集合,与该目标edition_census.expected_years做集合差;再把2026与明确非存档的SysML2018单列。保留原始导出与校验哈希,不把每个matched year误当逐篇/逐track完整。
与本清单同一阶段的WWW补采只补1995年现有poster轨道,不新增缺失年度,所以即使其15条增量已验收,135这个年度计数也不会随之下降。早期1994年的50条正式展示候选、307条混合节目候选共357条仍需核实;其中并非每条都是论文。
本清单用于明确第14步剩余范围,不代表第14步完成,也不替代所有导入结束后的第16步全库去重、摘要、约束和实际查询验收。
@@ -0,0 +1,33 @@
# ICML 与 IROS 早期主系列的来源范围
本轮修正采集阶段的届次识别,不修改任何现有生产投稿轨道或历史。正式主系列曾以Workshop命名,不等于附属workshop;也不能反过来把所有旧workshop升为主会。
## 已核实的精确范围
| 会议 | 论文集键 | 依据与行为 |
| --- | --- | --- |
| ICML | `conf/icml/1988`、`1989`、`1990`、`1991`、`1992` | [官方历史](https://icml.cc/Conferences/2008/past_icmls.shtml.html)将其列为第5–9届,年份与举办地对应固定目录中的完整标题。1989/1991/1992的Workshop名称不再导致主系列被默认排除;1988/1990保留main并增加来源范围证据 |
| IROS | `conf/iros/1988`、`1989`、`1990` | [IEEE RAS官方历届目录](https://www.ieee-ras.org/conferences-workshops/financially-co-sponsored/iros/iros-past-and-future-venues/)列出三届与论文集链接,地点及日期对应固定目录标题;这些是IROS主系列 |
规则同时要求family、booktitle基础别名(ML或IROS)、空轨道后缀、完整精确论文集键、匹配的事件年份及固定完整标题。仍执行原有书目年份核查:与事件年不同且标题无明确事件年时拒绝推断。ML91原始标题没有四位年份,使用精确1991卷键、完整标题、逐篇书目年和官方第8届记录,不从两位标题代码猜世纪。
`1991w`/`1988w`等卷键、booktitle中的Workshops后缀、不同届次/地点/完整标题、未列入的年份均不会获得上述主系列豁免。AISTATS/COLT既有精确规则保留;真正的附属workshop仍受默认不采集workshop的边界约束。
## 原始字段、决定与后续导入
采集器仍保存原始proceedings标题(包括Workshop)、书目年、原始作者名、完整来源书目字段及稳定标识;新增 `track_scope_note` 与官方 `track_scope_evidence_url`。接受状态仍只源自该论文的inproceedings书目证据;不从历史目录生成占位论文或拒稿,也不重新导入已经存在的记录。
新规则的输出必须重新做原始来源/标题/作者/稳定标识与现有库冲突预检,再按增量导入。此前被隔离的ICML1988/1990记录不能仅凭代码规则而直接解除全部冲突。当前正在运行的历史批次使用原固定版本和文件,不能在运行中替换其源码或输入。
## 验证与证据
新增回归覆盖:ICML三届Workshop名称、IROS最初三届、ICML原Conference名称的两届、错误卷键/后缀/标题/未知年份,以及归一化记录经过原生文件导入后保留轨道证据。构建与测试仅在已授权的ces-control远程runner执行,本机仅做语法和文本/JSON一致性检查;结果以相应commit的CI回执为准。
官方HTML在工作证据目录 `paper-index/historical-primary-series-evidence-v1/`,附响应状态、字节数、时间与SHA256;仅取元数据网页,没有下载论文全文。
| 来源 | UTC采样时间 | HTTP | 字节数 | SHA256 |
| --- | --- | ---: | ---: | --- |
| [icml-history](https://icml.cc/Conferences/2008/past_icmls.shtml.html) | 2026-11-08T18:36:43.043135+00:00 | 200 | 11993 | `80cce886fe985551339a52b13c4077acf827e8fcc01555f854dc24077bdebdf0` |
| [iros-history](https://www.ieee-ras.org/conferences-workshops/financially-co-sponsored/iros/iros-past-and-future-venues/) | 2026-11-08T18:36:45.687171+00:00 | 200 | 466059 | `fdb4594621e68567e1099f5c88aae53de835b7b8146025148c3b1968df990697` |
本次不关闭历史年度缺口,也不替代全部导入后的全库去重、来源/年度/track覆盖、摘要和实际查询验收。
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# 早期 NLP 来源范围复核
核查时间:2026-11-08 18:27 UTC(北京时间11月9日)。本轮只修正来源候选和记录可获得性,没有操作生产数据库。
## 跨会议候选修正
先前候选清单将 `conf/coling/1965`、`1967`、`1969`、`1973` 匹配到 ACL 年会缺口。这四卷标题明确属于 COLING;[COLING 官方 Anthology 目录](https://aclanthology.org/venues/coling/)将它们列在 COLING 下。出版者写作 ACL 或目标映射包含 COLING,不足以证明某一年是 ACL 联办届次。
从 ACL 候选中排除上述四卷,原始卷字段和排除理由保留在[候选JSON](historical-source-candidates-2026-11-09.json)的 `excluded_cross_venue_candidates` 中。135个历史会议—年份位置仍未关闭;有初步候选来源的年度由89修正为85,尚未匹配的由46增至50。这些数字是目录初筛结果,不是已验证可导入的论文数。
联合届次仍按具体年度的明确会议身份处理,例如有官方联办证据的卷可以属于多个会议。不能一律排除跨family卷,也不能把联合卷重复导入为两批论文。
## 来源待核实的早期年份
| 范围 | 本轮官方来源观察 | 处理 |
| --- | --- | --- |
| ACL 1963–1978,共16年 | [ACL 官方 Anthology 目录](https://aclanthology.org/venues/acl/)目前从1979年列起 | 保留历史举办清单;逐年核实是否有可索引发表材料,不能据会议举办就断言漏采正式论文集,也不据目录缺失断言未出版 |
| COLING 1971、1976、1978 | [主办委员会历史](https://ufal.mff.cuni.cz/iccl-old)列出这三届;当前Anthology COLING目录未列出 | 来源缺口继续开放,需要主办方或出版者逐篇索引;不生成占位论文或录用/拒稿记录 |
这19个位置不能用其他会议的卷补齐,也不能因本轮未找到目录而删除。公开拒稿可获得性是独立核查,不从论文集或录用清单缺失推断。
## 证据与复核
三份原始HTML及 `receipts.json` 保存在工作证据目录 `paper-index/nlp-history-source-review-v1/`;结构化响应URL、时间、状态、字节数和完整SHA256收录于候选JSON的 `scope_review.evidence`。三次响应均为HTTP200;未获取论文全文。
| 官方来源 | 响应SHA256 |
| --- | --- |
| [acl-venue](https://aclanthology.org/venues/acl/) | `d04c188c0769e065f18ca9c0246f70086e2f7027ce3efe5ea0f2cdc641796b72` |
| [coling-venue](https://aclanthology.org/venues/coling/) | `8e7ec0a2915bfbccaa26b7a7558a9cf977c4aadc119794516ecebb826f61623f` |
| [iccl-history](https://ufal.mff.cuni.cz/iccl-old) | `c5286dc51236c90685d22543ff1f7b209adcb3eedb82a7b1ac2115c8dd0169fc` |
复核时先校验保存的原始响应哈希,再读取目录中的会议身份和年度。实时网页若已变化,应另存新响应和时间,不能把新内容套用旧哈希。本次不改最初会议年度清单或生产年度快照,不代表第14步覆盖验收或第16步最终全库审计完成。
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# ICLR 2014–2016 官方历史录用档案
此适配器是长期维护工具的一部分,按需运行。只识别已经独立核对的三种页面布局;后续页面发生变化必须重新核查,不能放松计数或轨道边界以使采集成功。
| 官方页面 | 页面链接次数 | 整理后的不同记录 |
|---|---:|---:|
| [2014 Conference Proceedings](https://iclr.cc/archive/2014/conference-proceedings/) | 35 | main 35 |
| [2015 accepted-main](https://iclr.cc/archive/www/doku.php%3Fid=iclr2015:accepted-main.html) | 116 | main 31、workshop 74 |
| [2016 accepted-main](https://iclr.cc/archive/www/doku.php%3Fid=iclr2016:accepted-main.html) | 80 | main 80 |
2015 的 11 篇 oral 全部再次出现在 poster 段落中。相同年份、轨道及 arXiv 标识的重复展示只生成一条来源记录,但每次展示的标题、作者显示字符串、链接、版本和段落均保留在 `source_variants`。两处标题或解析作者冲突时停止采集、等待人工核查。不同年份或不同轨道不合并投稿。
2014 的作者以分号列出,一条有末尾分号,一条标题和作者斜体块不在普通段落中,部分作者段落拆成多个格式片段;必须读取完整作者段落或独立斜体块,不能只读首个格式片段。2016 的代码链接不属于作者。保留原文,解析结果不替代来源证据。oral、poster 作为 `iclr_archive:presentation` 标签,不改成独立投稿轨道。arXiv 版本留在来源变体中,稳定标识使用去版本号的编号。
## 来源快照与运行
2026-11-09 已冻结的官方响应 SHA256:
- 2014:`a33858176fbffae0066ed3c10310f7dd98a66d12a36334b6339ef1f915ef07af`
- 2015:`131491663742cb084662a4804009b8318e0fa7bc184d4a9044d16dd28f05b888`
- 2016:`7320b8652431793b6ea0743f871ee446bf08b6361ccd4e421b6b53449e71f4f6`
在服务器运行,输出新目录,不下载论文 PDF:
```sh
paper-atlas collect iclr-archive --year 2015 \
--snapshots /data/paper-index/collected/historical-next-source-evidence-v1 \
--out /data/paper-index/collected/iclr-archive-source-v1/2015
# 或重新下载官方 HTML,并保留 HTTP 缓存与收据
paper-atlas collect iclr-archive --year 2016 \
--cache /data/paper-index/cache/iclr-archive \
--out /data/paper-index/collected/iclr-archive-source-v1/2016
```
冻结输入目录必须包含 `receipts.json`,每项有精确 `url`、HTTP `status: 200`、相对 `file`、`bytes`、`sha256` 和带时区的 `finished_at`。读取时重新核对尺寸、哈希和路径;拒绝越界及指向目录外的软链接。已完成输出不可覆盖,应检查报告后另建明确版本目录。解析或计数失败时不生成完成报告,也不导入数据库。
输出分轨道 JSONL、manifest、原始 HTML 证据和年度采集报告。仅支持这三年已审查的页面。2014 workshop、其他未列轨道、逐篇摘要及公开拒稿范围尚未通过这些页面核验,不能据此声称完整。缺席不代表 rejected、withdrawn 或从未被录用。
## 导入前后的边界
这三页合计 220 条不同来源记录,不等于新增 220 篇论文;同一工作可能已存在于 arXiv 或其他会议。先核验来源字段与原始页面,再执行 PostgreSQL 只读预检,比较稳定标识、标题、作者和原始来源。标题/作者差异、版本关联及冲突必须保留证据并明确评估;不能仅靠标题猜测身份,也不能覆盖原有摘要。
采集器不连接数据库。正式导入使用既有 `import records`,必须有新的生产保护基线和独立验收;全部导入结束后仍需全库去重和历史覆盖审计。来自官方录用清单的 accepted 是清单观察,不是原始审稿决定签名或决定日期。
@@ -0,0 +1,201 @@
{
"format": 1,
"source_cache_sha256": "8a65562f3490497cada2919ec77827134beabd5ec9c3690dec3625e2318aa54e",
"records": [
{
"entry_id": "45",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/45/index.html",
"individual_sha256": "83bede6afc9a7039fae2dd1f28274a394418b34f5d5632590b913617580bda1a",
"title": "WISE - World Wide Information System for R&D; Efforts",
"authors": [
"Fritz Loseries",
"Veronika Samara",
"Bodo Urban"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "16",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/16/index.html",
"individual_sha256": "cf76da903eaeaa27d19857fdaa13220f6821559bf4ac22844fae10abbaa6f3f3",
"title": "The World Wide Web as a Tool for Collaborative Inter-Agency Projects: Creation of an Environmental Metadata Database for the Analysis of the Venice Lagoon Ecosystem.",
"authors": [
"Mirko Labbri"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "17",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/17/index.html",
"individual_sha256": "0578fec9c82e8f2f98c4de0f1bcc44011ebb84c53353fdcc423a69cf70673bc2",
"title": "NetRepreneur",
"authors": [
"Kari-Pekka Turtiainen",
"Antti Auer"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "29",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/29/index.html",
"individual_sha256": "624ad3f685de1163411e33e90488975d848a63243fd7ffbed0862c6fb58c4140",
"title": "Mosaic TueV 2.4.3: Multilingual GUI and Improvements towards User Friendliness",
"authors": [
"Mike Bretz",
"Uwe Koch",
"Paul de Bra"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "13",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/13/index.html",
"individual_sha256": "02409321a3403a94d8362a9862f4960386ea9c344fb47f4bcdf9eae128e8b46e",
"title": "Using a WWW Browser as an Alternative User Interface for Interactive Applications",
"authors": [
"Frank Lonczewski"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "36",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/36/index.html",
"individual_sha256": "ed9dada4ea5903cb8f0a4e75f2958416a6e32647fbf3530e58edd9abf26070ce",
"title": "HyperSource: A Hypermedia Program Development And Documentation System",
"authors": [
"Jan Oliver Borchers"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "57",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/57/index.html",
"individual_sha256": "3ad4206ad28a19823172cd2845f636fe7a461c251940e9a93deb8f6484b8a984",
"title": "Progressive Image Transmission Capability (PROTRAC) on the World Wide Web",
"authors": [
"Vojislav Lalich-Petrich",
"Gaurav Bhatia",
"Larry Davis"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "38",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/38/index.html",
"individual_sha256": "940370acc5e6a954b197053fe451e466a904d1f0ac82c8fe4e6ca455faf2c927",
"title": "Measuring the Web with Lycos",
"authors": [
"Michael L. Mauldin"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": "Official abstract listing has no abstract. Canonical HTML has body sections but no explicit abstract; body is not substituted as a summary."
},
{
"entry_id": "05",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/05/index.html",
"individual_sha256": "1858be87d6e7f47476e1cb8fb4793c0fce3b8a6ff653bcfd4a35089e0520f177",
"title": "Virtual Places - Adding people to the web",
"authors": [
"Yosi Mass"
],
"author_source": "author_index",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": "Official abstract listing and canonical HTML have no abstract. Canonical page identifies a contact and links PostScript; no full-text download. Author identity comes from author index, not inferred from contact role."
},
{
"entry_id": "37",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/37/index.html",
"individual_sha256": "b700a0a51b7a82a5f88373ae0283bb369d1cf6f455acff7d91cd7313fa8b3adf",
"title": "The Internet Public Library: Serving a Global Community",
"authors": [
"Susan Schweitzer"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "41",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/41/index.html",
"individual_sha256": "397b474109f9c1240a77d0f490f2b02dd35fae93febbb7397d1b2a31759a8ec1",
"title": "Graphical Browsing in the WorldWideWeb and the MultiMedia Forum",
"authors": [
"Rainer Pagé",
"Klaus Süllow"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "47",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/47/index.html",
"individual_sha256": "52eb4bfdd658730a222c98170b72dabf9cbcc5ffd2ada1e900b826baf2b02833",
"title": "Interoperating Advanced Hypermedia Systems with WWW",
"authors": [
"Jian Zhang",
"Martin Fruehauf",
"Thomas Kirste"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "50",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/50/index.html",
"individual_sha256": "8dc8b0561bd8b1b106c5b209a973c695c3cc9df5288450d4a01fe32541476b7e",
"title": "Web Enabled Agile Manufacturing",
"authors": [
"S. V. Iyer",
"T. Singh",
"U. Ravaioli",
"R. E. DeVor",
"S. G. Kapoor",
"G. Veknatasubramian"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "55",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/55/index.html",
"individual_sha256": "21780cd4047f513e8c9aeced5247002e27cf71719f08de85c6531b57a9e5058d",
"title": "Weblets: Fundamental Building Blocks for WWW Tools",
"authors": [
"Thomas J. Watt Jr."
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
},
{
"entry_id": "59",
"individual_url": "https://archives.iw3c2.org/www3/proceedings/posters/59/index.html",
"individual_sha256": "fed4cc9dcaee350a12c5e4b6fa9c99be9bead25a81632512d31566400d3d0fad",
"title": "Usenet and the World-Wide Web",
"authors": [
"M. L. Grant"
],
"author_source": "canonical_byline",
"reason": "Reviewed canonical H1 and explicit authorship for this exact linked poster entry; retain abstract-heading and author-index title variants without fuzzy matching.",
"missing_abstract_reason": ""
}
]
}
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# 按证据修正既有投稿的轨道
`paper-atlas maintain edition-tracks` 用于已导入整卷论文集、后来取得逐条官方分区证据的情形。它更正原投稿的 edition 归属,保留投稿 ID、所有决定和来源关系;不会重新导入论文、合并实体、生成研究方法标签或推断拒稿。支持独立 SQLite 样本和共享 PostgreSQL;不得写入已冻结的生产 SQLite 备份。
## 证据与完整范围
先核实官方目录、稳定 DOI、原始来源记录和分区,保存原始页面及 SHA256。输入 JSON 为 `{"format":1,"records":[...]}`,每条必须包含:
| 字段 | 含义 |
| --- | --- |
| `submission_id`、`source_record_id`、`external_id` | 原有投稿、主来源记录及主来源投稿标识 |
| `source`、`doi` | 原来源名称及其 metadata.record_identifiers 中的 DOI |
| `from_edition_id`、`year`、`venue` | 原 edition 及其真实年份和规范会议名 |
| `venue_names` | 规范会议名加全部已有别名;必须与库中一致 |
| `track` | 经核实的目标轨道,使用小写字母、数字、下划线;范围未明确可用 proceedings_unspecified |
| `section` | 官方分区原文或明确的未确定说明,不推断研究方法 |
| `evidence_url`、`evidence_sha256` | 已人工/独立核实的 HTTPS 原始证据和内容哈希 |
输入必须列出每个原 edition 的**全部**投稿,包含留在原轨道的记录。工具核对身份、DOI、单来源发表观察、现有别名、完整范围以及目标冲突;不自动解释 HTML,也不把填写了 URL/哈希当成已证明内容。核查者应先独立证明每条分区对应关系。
多来源共同拥有的投稿、有非 accepted 决定历史的投稿、已有分类修订、非空目标 edition、目标已有覆盖或标识等情形会停止,需要专门核对。每个原 edition 须有一个明确来源清单;其他来源或多清单覆盖需先另行协调。本功能不是任意批量移动或跨会合并工具。
## 只读计划、事务执行和验收
```sh
paper-atlas maintain edition-tracks \
--pg-service foundry-research --pg-schema research \
--inventory reviewed-inventory.json --out plan.json
sha256sum plan.json
paper-atlas maintain edition-tracks \
--pg-service foundry-research --pg-schema research \
--plan plan.json --plan-sha256 <上一步的完整SHA256> --out applied.json
```
报告路径必须是已有目录中的新文件。预检只读。执行使用 PostgreSQL 单写入 advisory lock,或 SQLite BEGIN IMMEDIATE;整个分类修正、逐来源证据、标识、覆盖及验收在一个事务中完成。计划绑定数据库身份、全部来源文本/非修订元数据、标签、可选 annotation_events、投稿/决定/来源/标识内容及原覆盖快照;过期即停止。失败回滚数据,PostgreSQL 序列可能留下正常间隙,不能用 max(id) 当数量。
目标 edition 沿用原会议、年份、event_key,不删除或重命名原 edition。只更正既有 submissions.edition_id 和对应 submission_identifiers.edition_id。原文、来源检索时间、决定 ID/状态/证据及各表来源关系不变。
分类证据写入来源元数据的保留字段 `edition_scope_curation_v1`,包括原范围、目标 edition、官方分区、URL、哈希和计划摘要。普通来源导入不能伪造或替换此字段;后续 record 刷新保留修订。相同来源投稿通过旧范围调用 decision 时仍路由到修正后的 edition。旧整卷 main 文件通过 import records 刷新会报错并回滚,要求先按核实轨道重新整理,避免覆盖正确的统计。
覆盖保留原清单 URL、cursor、成功时间,按实际目标分配 expected_count/imported_count 并标 partial;本工具核实分类,未核实摘要或所有来源完整性。原覆盖整行保留在计划中,不能继续将整卷数当 main 论文数。应用后校验原 edition 身份、全部受保护内容、分类、标识、修订字段和覆盖;相同计划再次执行仅在这些验收条件仍成立时返回 already_applied。
生产使用前必须在已确认 runner 完成软件验证。正式数据修正后仍需独立验收,并在最终全库审计中复核;单元测试和应用回执不能代替生产验收。
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# 同年多届会议的事件身份
`venue`、`year`、`track` 描述系列、年份和投稿轨道;`event_key` 区分同系列、同年、同轨道的实际会议事件。例如 WWW 1995 的春季与秋季会议分别使用 `www-1995-spring` 和 `www-1995-fall`,两者仍是 `main`。相同论文可以在两届有不同投稿与决定;论文去重不会把这两次投稿合成一次。
普通单届数据继续使用空键。新输入在同一组已有具名事件或已知同年多届时必须提供明确键;不能任选第一个 edition。已有来源刷新可依据自己的原投稿关系回到原事件,不能被显式改到另一事件。精确固定 DBLP 快照、WWW Fall 书目名、1995 年及 `www1995f.html` 卷共同支持旧秋季文件的归属;不按标题猜年份或季节。
规范 JSONL 行及 manifest 都可提供 `event_key`,非空值限制为最多80个小写字母、数字及 `._:-`,首字符为字母或数字。manifest 提供键时,每行必须一致;一份文件仍仅对应一个事件及轨道。跨行冲突会回滚整份业务导入。身份回填同样按事件选择,不能借机把来源移到另一届。
## 新样本与既有数据
新建 SQLite 样本的 `editions` 唯一键为 `(venue_id, year, track, event_key)`。已有 SQLite/PostgreSQL 不会因普通读写命令自动升级。其普通单届导入继续可用;WWW1994/1995或带事件键的导入会要求先迁移。冻结的 SQLite 生产备份仍受 cutover 标记保护,不能写入或升级。
先在 PostgreSQL 生成只读计划:
```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas maintain event-identity \
--pg-service foundry-research --pg-schema research --out /data/paper-index/event-plan.json
```
检查计划的数据库身份、原 edition IDs、业务表数量、目标来源与历史指纹。计数也包含已显式启用的可选注解表。精确计数在同一快照中按主键分页,每页最多5000行,只读取主键;不使用估计行数。CLI向stderr持续报告计数进度,避免大库长时间无输出。已有未标记 WWW1995 edition 必须逐投稿都有固定 DBLP Fall 卷证据,才会只为原 edition 填入 `www-1995-fall`;缺证或混合卷会拒绝计划。本文命令不表示生产已经迁移。
应用时传入同一文件及命令输出的文件 SHA256:
```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas maintain event-identity \
--pg-service foundry-research --pg-schema research \
--apply-plan /data/paper-index/event-plan.json --plan-sha256 PLAN_FILE_SHA256 \
--out /data/paper-index/event-applied.json
```
原生 PostgreSQL writer 使用现有 schema advisory lock,并在事务中锁定 editions,核对计划后添加列及替换唯一约束。SQLite 样本使用独占写事务,重建父表时保留 IDs,并在提交前检查外键;不级联删除子记录。额外列、未知唯一约束或 SQLite 额外索引会拒绝自动升级,须单独评估。未改变原版四列的排序内容哈希、任何业务表数量或目标投稿/决定/来源内容,才可提交;失败回滚。迁移标记与 DDL 同事务。原计划立即重试为 `already_applied`;若后续业务已经变化,应重新生成计划,不重放旧计划。
ECML 与 PKDD 的联合举办前事件已有不同 venue/edition,保持原身份即可。这项迁移不会把它们合并,也不会创建新的论文、投稿或决定。WWW 春季及1994两届的逐篇采集、来源核验和导入仍须另做。
## 查询与验收
```sh
paper-atlas query --pg-service foundry-research --pg-schema research \
--venue WWW --year 1995 --track main --event-key www-1995-fall
```
详细投稿历史及 `known_acceptances` 返回 `event_key`。`--event-key` 可与 `--status` 一起限定同一事件中的最新已知决定。未迁移的旧库仍可普通查询,其事件键为空;不能声称已经区分季节。`audit histories` 的新库事件输出也保留键。
远程测试应覆盖同一作品的两届独立投稿、拒稿后另一届录用、原 IDs 与 Unicode/NUL 来源内容保留、旧文件刷新、歧义及错误键拒绝、整文件回滚、明确事件的身份回填、旧计划失效、重试与真实 PostgreSQL 迁移。生产应用后还须独立核验约束、来源和历史、全文索引及 foundry-core 健康;单元测试不替代生产或最终全库去重验收。
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# Repairing joint conference membership
EURAI's [official history](https://www.eurai.org/ecai/history) identifies ECAI 2018
and 2022 as joint IJCAI/ECAI conferences. The pinned DBLP volumes
`conf/ijcai/2018` and `conf/ijcai/2022` use `IJCAI` as their booktitle and title.
Existing records can therefore already be present under IJCAI while an ECAI query
shows a missing year. Adding ECAI as a global alias to the ordinary IJCAI venue
would incorrectly include all other IJCAI years.
The existing canonical `ECAI+IJCAI` venue has both member aliases. This maintenance
command changes only the venue reference of the two existing `main` edition rows.
Edition IDs, submission IDs, decisions, source text, authors, identifiers, tags,
source links and coverage records stay intact. It does not merge or create papers
or submissions, resolve per-paper tracks, or turn reviews into negative decisions.
The DBLP collector applies the joint mapping only to these two exact main volume
keys; original booktitle/title remain in source metadata with the membership evidence.
The shared ingestion entry point also resolves these exact pinned source volumes before
creating an edition, so refreshing an older normalized file cannot recreate a separate
IJCAI edition. Other sources, years, workshop volumes and additional tracks retain their existing rules.
## Review a read-only plan
Use a runtime containing this repair command. The configured PostgreSQL writer lock
is used only for the apply operation; do not replace a newer ingestion runtime with
an older main-based feature branch.
```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas maintain joint-editions \
--pg-service foundry-research --pg-schema research --out joint-plan.json
```
The preflight requires the existing joint venue and exactly its two member aliases,
one nonempty unambiguous edition per year, and matching pinned DBLP volume evidence
for every existing submission. A colliding target edition, missing provenance or
unexpected source scope fails closed. The plan binds current database/schema, IDs,
counts and full fingerprints of affected papers, identifiers, source records, tags,
submissions, decisions and their provenance, and coverage rows. Observation time is
recorded separately from conference year. These are scoped checks, not a final global
identity or conference completeness audit.
## Apply the exact reviewed plan
Compute the file's SHA256 after review and pass it explicitly:
```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas maintain joint-editions \
--pg-service foundry-research --pg-schema research --plan joint-plan.json \
--plan-sha256 "$PLAN_SHA256" --out joint-applied.json
```
The plan hash is checked before opening a writer. Current evidence is checked again
under the dataset writer lock; both edition updates and an audit marker commit in one
transaction. Protected row hashes are checked again before commit. Changed evidence
requires a fresh reviewed plan. Existing output reports are preserved; choose a new
path for another run. SQLite samples use `--db sample.sqlite`; the frozen production
backup remains protected.
If a response is lost after commit, rerun with the same plan and a new output path.
When protected evidence is unchanged and both editions already point to the joint
venue, the result is `already_joint` with zero updates. It does not replay imports or
regenerate source records. Keep the plan, apply report and independent postcheck
alongside collection evidence. The audit marker is `joint_ijcai_ecai_2018_2022_v1`.
Publication counts can differ between the DBLP volume and the current publisher
page. This membership repair preserves all existing rows rather than deleting entries
to force an aggregate match; section-level main/invited/other classification and
publication completeness require separate per-paper evidence.
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# Integrated research runtime
This branch composes the independently reviewed identity guards (PR25), incremental
coverage (PR27), joint-edition refresh guard (PR29), event identity (PR30), and optional
annotation support (PR28). It starts from main 1b81d1a and preserves their commits;
it is an explicit integration dependency, not evidence that those PRs have merged.
Users merge through Gitea manually. Review this combined diff against main, including
its conflict resolutions, before using it as the maintained runtime.
The shared Store preserves stable source/identifier anchors before title matching,
rejects ambiguous unanchored matches, resolves pinned IJCAI/ECAI volumes before event
lookup, and selects same-year events by event_key. Incremental manifests for a named
or ambiguous event must state event_key; their parent count and optimistic update
are checked against that exact event, not the first venue/year/track match.
Query filters compose event_key, status, tags and research type. An earlier rejected
attempt and a later known acceptance remain distinct; neither annotations nor track
names infer a research type. Installing this code does not initialize annotation_events.
Event plans count that optional table when present, alongside the original business
rows. Annotation initialization and event identity upgrade remain explicit commands
with their own transactional checks. Neither command imports historical records.
## Production sequencing
1. Verify the exact integrated commit on the approved ces-control runner, including
the real PostgreSQL interaction tests and wheel/installed CLI checks.
2. Stage that exact source in a separate release directory and verify package hashes;
leave the current runtime and frozen SQLite backup intact.
3. Inspect live writers and coordinate through the existing database writer lock.
Generate a fresh read-only event plan using that integrated release. Check its
database/schema identity, all business counts and preserved history hashes. A plan
from before further data or optional-schema changes must not be reused.
4. Apply only that reviewed file with its actual SHA256, in one transaction. Independently
verify the constraint, original edition IDs and fields, assigned Fall source, source
and history bytes, ordinary queries, full-text queries and foundry health.
5. Use the verified integrated release for subsequent writes. Older writers lacking
event identity support must not resume against the upgraded schema. Annotation
initialization requires a separate explicit operation and acceptance.
These are operational requirements, not claims of completed production deployment.
The production event-key migration and optional annotation activation have not occurred
at preparation time. Existing migration/import/repair acceptance remains valid; do not
rerun those jobs to install source code. Cross-feature tests use disposable fixtures
and PostgreSQL schemas, never the production research tables.
Coverage output also returns event_key for each independent edition ID. Two same-year
main events keep their own status/source counts; venue paper totals remain distinct
work counts rather than sums across events. Legacy datasets without the event column
return an empty event key and remain read-only compatible.
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# Early WWW archive collector
`paper-atlas collect www-archive` is a maintained metadata adapter. It reads official
IW3C2 archive HTML, keeps exact source hashes, and separates importable rows from
program entries that still need review. It fetches no PDF, follows no paper-body or
reference link, and makes no database connection.
For a fresh source snapshot on the server:
```sh
paper-atlas collect www-archive \
--http-cache /data/paper-index/cache/www-archive \
--source-cache /data/paper-index/collected/www-archive-source-v2 \
--out /data/paper-index/collected/www-archive-normalized-v2
```
For reproducible offline replay of the already verified snapshot:
```sh
paper-atlas collect www-archive \
--source-cache /data/paper-index/collected/www-early-archive-source-v1 \
--source-cache-sha256 c9388ccef44486e0684c9ee9e8620a465cdc4574e6bc9ea9391d743e01a3312c \
--out /data/paper-index/collected/www-archive-normalized-v1
```
Use a new output directory for another batch. Existing snapshots and normalized
batches are never overwritten. The manifest hash binds every source URL, byte count,
response hash and cache filename. Plain files must remain directly within the cache;
symlinks, escaping paths, duplicate URLs, non-200 responses and altered bytes fail.
The command uses UTF-8 where valid and explicitly records an ISO-8859-1 fallback for
older pages; original bytes remain authoritative for encoding corrections.
## Evidence and outputs
- WWW3 Spring 1995 papers use `event_key=www-1995-spring`, `track=main`. The author,
session and abstract indexes must have the same nonempty entry-ID set. The ID is
local to this exact event and proceedings section, never a DOI or OpenReview ID.
- Posters remain `track=poster`. An abstract without a linked author-index entry
stays in review even when another index has a placeholder `#` link for it.
- Paper URLs must agree between author and session indexes. A malformed whitespace
URL in the abstract list may use the exact event/entry-ID match only when both
independent indexes corroborate the same clean URL. The original href is retained.
- Canonical names come from the explicitly labeled author index. The source lists
them alphabetically; this is **not** original byline order. Both the raw index names
and the full abstract-page byline/affiliation text remain in metadata. No person ID
or cross-source identity is inferred from a name. Conflicting titles or missing
abstracts stay in review. Topic keywords are not treated as an abstract.
- WWW1 1994 formal presentations and WWW2 1994 mixed categories remain review
candidates. The first list contains uncertain business-track annotations and a
count discrepancy; the second contains panels, tutorials, products and other
activities. Neither presentation listing nor a missing full-text link establishes
a regular-paper acceptance or a rejection. Raw category/title/name claims are kept.
The main and poster JSONL files have independent manifests with explicit event key,
track, count and SHA256. `source_listing_count` records the full recognized abstract
listing, while `held_entry_count` records excluded entries; neither is a ready-row
count. Their status stays `partial`: a verified linked subset does
not prove complete event coverage. `review-candidates.jsonl` contains nested
candidates and reasons, with no importable decision status. It is excluded from
`import-queue.json`. `report.json` accounts for ready/held records and every source
used. Newlines delimit JSONL; Unicode U+2028/U+2029 inside metadata are not line breaks.
The output is published only after all required source and scope checks pass.
## Before importing
This independent collector branch starts from main; it does not include or silently
install the event-aware writer. Its output requires the reviewed integrated runtime
from PR31 (or a main revision containing that implementation). The production event
schema migration has been independently accepted, preserving existing edition1212
and its 59 Fall submissions; that is not an import of the Spring proceedings.
Inspect held entries and original author names, preflight every ready row against
current PostgreSQL stable identifiers and candidate identities, and verify the
source/year/track/event coverage before running `import records`. When a ready subset
excludes held entries, preserve the independently known listing total in the existing
incremental-coverage protocol: bind a freshly checked parent count and expected count,
and set the full expected count from this manifest. A new source uses previous count
0 and previous expected count null; an existing source requires its actual current
values. These live parent values are not guessed by the offline collector. Do not automatically
run this queue against an older writer. Preserve extended versions and independent
submission/decision evidence, and keep unresolved identities held. A normalization
report or passing tests alone do not establish production import, complete historical
coverage or final global deduplication.
Initial fixed-cache replay (64ced7a, CI1057): 38 main papers and38 posters ready;
372 entries held (50 first-conference fields,307 mixed program entries,15 posters).
Independent report44dfd070 verified source hashes,counts and author evidence, finding
one existing exact-title candidate. That publication is explicitly linked to
arXiv1811.12161 by its WWW1995/journal-reference declaration; arXiv1810.07232 is a
different1997 invited chapter and remains separate despite the overlap note. This
is a preparation observation, not evidence of completed production import or final
global deduplication.
## 以单篇官方页面核实待处理 poster
作者索引漏链接、摘要目录使用短标题或标题存在拼写差异时,不放宽全局标题匹配。可以先取得单篇官方 HTML,人工核对 H1、署名区与原目录同一 entry URL,再提供带 SHA256 的逐条核查文件:
```sh
paper-atlas collect www-archive \
--source-cache /data/paper-index/collected/www-poster-reviewed-source-v2 \
--source-cache-sha256 8a65562f3490497cada2919ec77827134beabd5ec9c3690dec3625e2318aa54e \
--reviewed-posters docs/coverage/www-1995-posters-reviewed-2026-11-09.json \
--reviewed-posters-sha256 <核查文件的SHA256> \
--out <新的输出目录>
```
[1995 年15条poster的核查输入](coverage/www-1995-posters-reviewed-2026-11-09.json) 绑定61页来源快照:原46页和补取的15页单篇HTML。程序验证输入文件及快照哈希、单篇页面哈希、完全一致的 canonical H1、原摘要目录中的同一URL/entry ID及作者证据,不通过相似标题猜身份。规范标题采用单篇H1,摘要目录标题及作者索引标题均在 metadata 中保留。
`author_source=canonical_byline` 表示名字出现在H1之后、摘要/关键词或下一节标题之前的署名区域,由逐条核查明确选出,不从全文引用或机构猜作者;保留原始缩写、顺序、重音和拼写。只有 `author_source=author_index` 时使用原作者索引顺序并逐项核对;05的单篇页面写的是联系人,作者身份使用原作者索引证据,不由联系人角色推断。核查输入是审阅后的数据声明,程序的字符串/哈希检查不代替人工识别署名语义。
38和05的来源没有可明确引用的摘要。保留 `abstract=null` 和逐条缺失原因,manifest准确报告 missing_abstract_count,继续标partial;正文、联系方式及PostScript链接不当作摘要,也不下载正文。缺摘要不等于拒稿或未发表。本批输出仍包含原先已验收记录,正式导入前必须只取新增external ID,检查实时覆盖父记录并按incremental模式准备,不能直接重导入全部输出。
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@@ -45,6 +45,8 @@ def report(db, registry, *, pg_service=None, pg_schema=None):
database, schema = identity[0], identity[1]
else:
database, schema = str(Path(db).resolve()), None
from paper_atlas.db.events import has_event_key
event = 'e.event_key' if has_event_key(connection) else "''"
latest = _status_counts(connection, latest=True)
observations = _status_counts(connection, latest=False)
# Aggregate the paper join once for the whole snapshot. Repeating it
@@ -73,9 +75,9 @@ def report(db, registry, *, pg_service=None, pg_schema=None):
params = (acronym, acronym)
editions = []
for row in connection.execute('''SELECT e.id,v.id AS venue_id,v.acronym AS canonical_venue,
e.year,e.track FROM editions e JOIN venues v ON v.id=e.venue_id
e.year,e.track,''' + event + ''' AS event_key FROM editions e JOIN venues v ON v.id=e.venue_id
WHERE ''' + scope + '''
ORDER BY e.year,e.track,v.acronym''', params):
ORDER BY e.year,e.track,event_key,v.acronym,e.id''', params):
edition = dict(row)
edition.update(edition_counts.get(row['id'], {
'submissions': 0, 'papers': 0, 'papers_without_abstract_text': 0}))
+5 -1
View File
@@ -124,7 +124,11 @@ def report(db=None, *, pg_service=None, pg_schema=None, examples=20):
sample_attempts.append(rows)
current = []
for raw in connection.execute(ATTEMPTS):
from paper_atlas.db.events import has_event_key
attempts_sql = ATTEMPTS
if has_event_key(connection):
attempts_sql = attempts_sql.replace('e.year,e.track,', 'e.year,e.track,e.event_key,', 1).replace('e.year,e.track\n', 'e.year,e.track,e.event_key\n')
for raw in connection.execute(attempts_sql):
row = dict(raw)
if current and row['paper_id'] != current[0]['paper_id']:
consume(current)
+7
View File
@@ -6,12 +6,14 @@ from paper_atlas import __version__
COMMANDS = {
('annotate',): ('paper_atlas.curation.annotations', {}, '管理独立的研究类型与自定义标签证据'),
('curate','identifiers'): ('paper_atlas.curation.identifiers', {}, '按证据补充稳定标识并生成独立待导入文件'),
('query',): ('paper_atlas.querying', {}, '查询论文、标签和投稿历史'),
('coverage',): ('paper_atlas.audits.coverage', {}, '查看全部候选会议的覆盖情况'),
('download',): ('paper_atlas.io.snapshots', {}, '下载并校验固定版本快照'),
('collect','pmlr'): ('paper_atlas.collectors.pmlr', {}, 'PMLR 官方元数据'),
('collect','acl'): ('paper_atlas.collectors.acl', {}, 'ACL Anthology XML'),
('collect','iclr-archive'): ('paper_atlas.collectors.iclr_archive', {}, '核对ICLR 2014–2016官方历史录用档案'),
('collect','iclr-program'): ('paper_atlas.collectors.iclr', {}, 'ICLR 官方公开程序'),
('collect','iclr-snapshot'): ('paper_atlas.collectors.openreview', {}, 'ICLR 公开投稿与决定快照'),
('collect','public-openreview'): ('paper_atlas.collectors.public_openreview', {}, '核验其他会议的公开拒稿及撤稿标签'),
@@ -22,10 +24,15 @@ COMMANDS = {
('collect','mlsys'): ('paper_atlas.collectors.proceedings', {'source':'mlsys'}, 'MLSys 官方历年标题与摘要'),
('collect','cvf'): ('paper_atlas.collectors.vision', {'source':'cvf'}, 'CVPR / ICCV 官方开放目录'),
('collect','ecva'): ('paper_atlas.collectors.vision', {'source':'ecva'}, 'ECCV 官方开放目录'),
('collect','aamas-proceedings'): ('paper_atlas.collectors.aamas', {}, '按官方目录区分 AAMAS 发表形式和摘要'),
('collect','www-archive'): ('paper_atlas.collectors.www_archive', {}, '核验早期WWW官方档案并分开待核查条目'),
('collect','dblp'): ('paper_atlas.collectors.dblp_records', {}, '核对并整理 DBLP 历史发表记录'),
('catalogue','dblp'): ('paper_atlas.collectors.dblp', {}, '盘点 DBLP 历史会议目录'),
('import','arxiv'): ('paper_atlas.ingestion.arxiv', {}, '导入 arXiv 元数据 ZIP'),
('import','records'): ('paper_atlas.ingestion.records', {}, '导入核验过的会议文件'),
('maintain','edition-tracks'): ('paper_atlas.ingestion.edition_tracks', {}, '按逐条来源证据修正既有投稿轨道并保护刷新'),
('maintain','joint-editions'): ('paper_atlas.ingestion.joint_editions', {}, '按已核验计划修正既有联合会议届次归属'),
('maintain','event-identity'): ('paper_atlas.ingestion.event_identity', {}, '按核验计划增加同年会议事件身份'),
('maintain','merge'): ('paper_atlas.ingestion.maintenance', {}, '协调单写入合并与恢复'),
('maintain','backfill'): ('paper_atlas.ingestion.backfill', {}, '回填既有投稿的来源身份'),
('maintain','arxiv-tags'): ('paper_atlas.ingestion.arxiv_tags', {}, '恢复逐来源记录的 arXiv 类别证据'),
+210
View File
@@ -0,0 +1,210 @@
"""Official AAMAS proceedings metadata, with publication format separate from track."""
import argparse
from collections import Counter, defaultdict
import fcntl
import hashlib
import json
from pathlib import Path
import re
import tempfile
from urllib.parse import urljoin, urlsplit
from paper_atlas.db.submissions import timestamp
from paper_atlas.io.html import Document, Node, clean
from paper_atlas.io.http import fetch
SOURCE = 'aamas_proceedings'
ROOT = 'https://www.ifaamas.org/Proceedings/aamas2012/'
# Counts independently checked against the frozen publisher sections. This
# adapter deliberately refuses other editions/layouts until they are reviewed.
SECTIONS = {
'fullpapers': ('Full Papers', 'full_paper', 'proceedings_unspecified', 136),
'extabstracts': ('Extended Abstracts', 'extended_abstract', 'proceedings_unspecified', 146),
'demos': ('Demos', 'demo', 'demo', 28),
'doctorals': ('Doctorial Consortium Abstracts', 'doctoral_abstract', 'doctoral', 24),
}
def classes(node):
return set(node.attrs.get('class', '').split())
def text_without(node, omitted):
if node.tag in ('script', 'style') or classes(node) & omitted:
return ''
parts = [text_without(child, omitted) if isinstance(child, Node) else child
for child in node.children]
value = ''.join(parts)
return ' '+value+' ' if node.tag in ('p', 'div', 'section', 'li', 'br') else value
def one(nodes, description):
if len(nodes) != 1:
raise ValueError('Expected one '+description)
return nodes[0]
def parse_section(html, section, observed_at, evidence):
heading, publication_format, track, _ = SECTIONS[section]
document = Document(html)
titles = [clean(n.text()) for n in document.root.walk() if n.tag == 'title']
if titles != [heading+' - AAMAS 2012']:
raise ValueError('Unexpected proceedings edition or section title')
headings = [clean(n.text()) for n in document.root.walk() if n.tag == 'h1']
if headings != [heading]:
raise ValueError('Unexpected proceedings section heading')
url = ROOT+'resources/'+section+'.html'
records = []
seen = set()
session = None
for node in document.root.walk():
if node.tag == 'h2' and 'section' in classes(node):
session = {'id': node.attrs.get('id'), 'title': clean(node.text())}
if node.tag != 'div' or 'paper' not in classes(node):
continue
paper_id = node.attrs.get('id', '')
if not re.fullmatch(r'[A-Za-z0-9]+_[0-9]+', paper_id) or paper_id in seen:
raise ValueError('Missing or repeated publisher paper ID')
seen.add(paper_id)
title_node = one([n for n in node.walk() if n.tag == 'span' and 'title' in classes(n)], 'paper title')
link = one([n for n in title_node.children if isinstance(n, Node) and n.tag == 'a'], 'paper link')
paper_url = urljoin(url, link.attrs.get('href', ''))
if paper_url != ROOT+'papers/'+paper_id+'.pdf':
raise ValueError('Paper link differs from publisher ID or official host')
title = clean(text_without(link, {'abstract'}))
abstract_nodes = [n for n in link.walk() if n.tag == 'span' and 'abstract' in classes(n)]
if len(abstract_nodes) > 1:
raise ValueError('Multiple abstracts for one paper')
abstract = (clean(abstract_nodes[0].text()) or None) if abstract_nodes else None
author_node = one([n for n in node.walk() if n.tag == 'span' and 'authors' in classes(n)], 'author list')
author_display = clean(text_without(author_node, {'amount'}))
authors = [clean(name) for name in author_display.split(',')]
if not title or not author_display or any(not name for name in authors):
raise ValueError('Empty paper title or author')
tags = [{'namespace': 'aamas_proceedings:publication_format', 'value': publication_format}]
if session:
tags.append({'namespace': 'aamas_proceedings:session', 'value': session['title']})
records.append({
'source': SOURCE, 'external_id': '2012/'+paper_id,
'url': url+'#'+paper_id, 'title': title, 'abstract': abstract,
'authors': authors, 'identifiers': {}, 'venue': 'AAMAS', 'venue_aliases': [],
'year': 2012, 'track': track, 'status': 'accepted',
'observed_at': observed_at,
'raw_decision': 'listed in official AAMAS 2012 proceedings '+heading,
'metadata': {'publisher_paper_id': paper_id, 'paper_url': paper_url,
'section_url': url, 'section_heading': heading,
'publication_format': publication_format, 'session': session,
'authors_display': author_display, 'source_evidence': evidence,
'publication_evidence': 'official published proceedings entry; not an original decision note',
'track_scope_note': ('Full papers and extended abstracts include general and special submission tracks; '
'session topics do not establish an individual submission track.'
if track == 'proceedings_unspecified' else 'Explicit publisher section.'),
'decision_date_precision': 'not_supplied'},
'tags': tags})
if not records:
raise ValueError('No publisher paper entries found')
return records
def read_pages(cache=None, snapshots=None):
if bool(cache) == bool(snapshots):
raise ValueError('Choose exactly one HTTP cache or frozen snapshot directory')
urls = {'introduction': ROOT, **{key: ROOT+'resources/'+key+'.html' for key in SECTIONS}}
pages = {}
receipts = []
frozen = json.loads((Path(snapshots)/'receipts.json').read_text())['receipts'] if snapshots else []
for key, url in urls.items():
if snapshots:
receipt = one([r for r in frozen if r['url'] == url], 'frozen response receipt')
filename = Path(receipt['file'])
if filename.is_absolute() or '..' in filename.parts or receipt.get('status') != 200:
raise ValueError('Unsafe or unsuccessful frozen response')
data = (Path(snapshots)/filename).read_bytes()
if len(data) > 8*1024**2 or hashlib.sha256(data).hexdigest() != receipt['sha256'] or len(data) != receipt['bytes']:
raise ValueError('Frozen publisher response checksum or size mismatch')
observed = receipt['finished_at']
else:
data = fetch(url, cache, 8*1024**2, delay=1)
receipt = json.loads((Path(cache)/hashlib.sha256(url.encode()).hexdigest()).with_suffix('.json').read_text())
observed = receipt['retrieved_at']
evidence = {'url': url, 'sha256': hashlib.sha256(data).hexdigest(), 'bytes': len(data),
'file': 'evidence/'+hashlib.sha256(data).hexdigest()+'.html', 'observed_at': observed,
'http_status': 200, 'response_receipt': receipt}
pages[key] = (data, evidence)
receipts.append(evidence)
return pages, receipts
def _collect(year, out, *, cache=None, snapshots=None):
if year != 2012:
raise ValueError('Only the independently reviewed AAMAS 2012 layout is supported')
pages, receipts = read_pages(cache, snapshots)
intro = Document(pages['introduction'][0].decode('utf-8'))
if [clean(n.text()) for n in intro.root.walk() if n.tag == 'title'] != ['AAMAS 2012']:
raise ValueError('Unexpected proceedings introduction')
records = []
for section, (_, _, _, expected) in SECTIONS.items():
data, evidence = pages[section]
group = parse_section(data.decode('utf-8'), section, evidence['observed_at'], evidence)
if len(group) != expected:
raise ValueError('Publisher section count differs from reviewed inventory: '+section)
records.extend(group)
if len({r['external_id'] for r in records}) != len(records):
raise ValueError('Paper IDs collide across publisher sections')
grouped = defaultdict(list)
for record in records:
grouped[record['track']].append(record)
out = Path(out)
out.mkdir(parents=True, exist_ok=True)
files = []
with tempfile.TemporaryDirectory(prefix='.aamas-', dir=out) as temporary:
stage = Path(temporary)
(stage/'evidence').mkdir()
for data, evidence in pages.values():
(stage/evidence['file']).write_bytes(data)
for track, group in sorted(grouped.items()):
path = stage/f'aamas-proceedings-2012-{track}.jsonl'
path.write_text(''.join(json.dumps(r, ensure_ascii=False)+'\n' for r in group))
manifest = {'source': SOURCE, 'parser_version': 1, 'venue': 'AAMAS', 'year': 2012, 'track': track,
'count': len(group), 'file': str(out/path.name), 'file_sha256': hashlib.sha256(path.read_bytes()).hexdigest(),
'list_url': ROOT, 'status': 'partial', 'missing_abstract_count': sum(not r['abstract'] for r in group),
'publication_format_counts': dict(Counter(r['metadata']['publication_format'] for r in group)),
'note': 'Publisher sections verified; individual full/extended submission track, decision history and independent identities still need review.'}
path.with_suffix('.manifest.json').write_text(json.dumps(manifest, ensure_ascii=False, indent=2)+'\n')
files.append(manifest)
result = {'source': SOURCE, 'year': year, 'finished_at': timestamp(), 'status': 'collected_pending_identity_review',
'records': len(records), 'files': files, 'source_receipts': receipts,
'publication_format_counts': dict(Counter(r['metadata']['publication_format'] for r in records)),
'database_written': False, 'pdfs_downloaded': False,
'note': 'Aggregate submission/withdrawal totals do not identify individual rejected or withdrawn papers.'}
(stage/'aamas-proceedings-2012.json').write_text(json.dumps(result, ensure_ascii=False, indent=2)+'\n')
# Validated files first; write the completed collection report last.
(out/'evidence').mkdir(exist_ok=True)
for path in (stage/'evidence').iterdir():
path.replace(out/'evidence'/path.name)
for path in stage.iterdir():
if path.is_file() and path.name != 'aamas-proceedings-2012.json':
path.replace(out/path.name)
(stage/'aamas-proceedings-2012.json').replace(out/'aamas-proceedings-2012.json')
return result
def collect(year, out, *, cache=None, snapshots=None):
if year != 2012:
raise ValueError('Only the independently reviewed AAMAS 2012 layout is supported')
out = Path(out)
out.mkdir(parents=True, exist_ok=True)
with (out/'aamas.collect.lock').open('a') as lock:
fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB)
return _collect(year, out, cache=cache, snapshots=snapshots)
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog)
parser.add_argument('--year', type=int, choices=[2012], required=True)
parser.add_argument('--out', required=True)
source = parser.add_mutually_exclusive_group(required=True)
source.add_argument('--cache')
source.add_argument('--snapshots')
args = parser.parse_args(argv)
print(json.dumps(collect(args.year, args.out, cache=args.cache, snapshots=args.snapshots), ensure_ascii=False))
+2
View File
@@ -88,6 +88,8 @@ def normalize_row(row,volumes,targets,include_workshops=False,through_year=2026)
'scope_rule':edition['rule'],'author_names_raw':fields.get('author',[]),'publtype':row.get('publtype'),
'bibliography':{key:value for key,value in fields.items() if key in ('booktitle','year','ee','url','pages','volume','number','publisher','series','isbn')},
'ambiguous_identifiers':ambiguous,'publication_evidence':'inproceedings bibliography; not an original decision note'}
if edition.get('joint_edition_evidence'):
metadata['joint_edition_evidence'] = edition['joint_edition_evidence']
if edition.get('track_scope_note'):
metadata['track_scope_note']=edition['track_scope_note']
if edition.get('track_scope_evidence_url'):
+34
View File
@@ -54,7 +54,34 @@ HISTORICAL_WORKSHOP_TITLES = {
}
# Exact pinned volume titles corroborated by official series histories. The
# original title (including Workshop) remains in source metadata. In particular
# ML91 has no four-digit year in its title; its exact key/title and bibliographic
# year are checked independently, rather than guessing a title year.
HISTORICAL_PRIMARY_EVIDENCE = {
'icml': ('ML', 'https://icml.cc/Conferences/2008/past_icmls.shtml.html'),
'iros': ('IROS', 'https://www.ieee-ras.org/conferences-workshops/financially-co-sponsored/iros/iros-past-and-future-venues/'),
}
HISTORICAL_PRIMARY_TITLES = {
('icml', 1988): 'Machine Learning, Proceedings of the Fifth International Conference on Machine Learning, Ann Arbor, Michigan, USA, June 12-14, 1988',
('icml', 1989): 'Proceedings of the Sixth International Workshop on Machine Learning (ML 1989), Cornell University, Ithaca, New York, USA, June 26-27, 1989',
('icml', 1990): 'Machine Learning, Proceedings of the Seventh International Conference on Machine Learning, Austin, Texas, USA, June 21-23, 1990',
('icml', 1991): 'Proceedings of the Eighth International Workshop (ML91), Northwestern University, Evanston, Illinois, USA',
('icml', 1992): 'Proceedings of the Ninth International Workshop on Machine Learning (ML 1992), Aberdeen, Scotland, UK, July 1-3, 1992',
('iros', 1988): "IEEE International Workshop on Intelligent Robots and Systems '88, Proceedings. IROS 1988, Tokyo, Japan, October 31 - November 2, 1988",
('iros', 1989): "IEEE International Workshop on Intelligent Robots and Systems '89, Proceedings. IROS 1989, September 4-6, 1989, Tsukuba, Japan",
('iros', 1990): "IEEE International Workshop on Intelligent Robots and Systems '90, Towards a New Frontier of Applications, Proceedings. IROS 1990, July 3-6, 1990, Ibaraki, Japan",
}
def historical_track(family, base, suffix, volume_key, year, title):
primary = HISTORICAL_PRIMARY_EVIDENCE.get(family)
if (primary and not suffix and base.casefold() == primary[0].casefold()
and volume_key == f'conf/{family}/{year}'
and title == HISTORICAL_PRIMARY_TITLES.get((family, year))):
return ('main',
'Historical primary series; exact proceedings key, complete title and bibliographic/event year corroborated by official series history. Workshop in this original title is not an affiliated track.',
primary[1])
if suffix or base.casefold() != family or volume_key != f'conf/{family}/{year}':
return None
prefix = HISTORICAL_WORKSHOP_TITLES.get((family, year))
@@ -131,8 +158,15 @@ def scope(row,volume,through_year=2026):
elif suffix.casefold() in ('poster','posters') and venue not in ('ICLR','ACL','EMNLP','NAACL','EACL','COLING','CoNLL'):track='poster'
if venue=='AAAI+IAAI':track='proceedings_unspecified'
if venue=='AAMAS' and year<2002:return None,'predecessor_not_aamas'
joint_evidence = None
if (family == 'ijcai' and base == 'IJCAI' and track == 'main'
and year in (2018, 2022) and volume['key'] == 'conf/ijcai/' + str(year)):
venue, aliases = 'ECAI+IJCAI', ['ECAI', 'IJCAI']
joint_evidence = 'https://www.eurai.org/ecai/history'
result = {'venue':venue,'venue_aliases':aliases,'year':year,'track':track,'bibliographic_year':int(bibliographic[0]),
'rule':family+':'+base,'proceedings_title':title,'edition_year_basis':year_basis}
if joint_evidence:
result['joint_edition_evidence'] = joint_evidence
if historical:
result['track_scope_note'] = historical[1]
result['track_scope_evidence_url'] = historical[2]
+225
View File
@@ -0,0 +1,225 @@
"""Frozen official ICLR 2014–2016 lists; presentation evidence is not a track."""
import argparse
from collections import Counter, defaultdict
import fcntl
import hashlib
import json
from pathlib import Path
import re
import tempfile
from urllib.parse import urlsplit
from paper_atlas.db.submissions import timestamp
from paper_atlas.io.html import Document, Node, clean
from paper_atlas.io.http import fetch
SOURCE = 'iclr_archive'
PAGES = {
2014: ('https://iclr.cc/archive/2014/conference-proceedings/', {'main': 35}),
2015: ('https://iclr.cc/archive/www/doku.php%3Fid=iclr2015:accepted-main.html', {'main': 31, 'workshop': 74}),
2016: ('https://iclr.cc/archive/www/doku.php%3Fid=iclr2016:accepted-main.html', {'main': 80}),
}
SECTIONS = {
2015: {'Main Conference - Oral Presentations': ('main', 'oral'),
'Main Conference - Poster Presentations': ('main', 'poster'),
'Workshop Papers': ('workshop', 'workshop')},
2016: {'Oral Presentations': ('main', 'oral'), 'Poster Presentations': ('main', 'poster')},
}
def arxiv_link(url):
parsed = urlsplit(url)
if parsed.hostname != 'arxiv.org':
return None
match = re.fullmatch(r'/(?:abs|pdf)/(\d{4}\.\d{4,5})(v[1-9]\d*)?(?:\.pdf)?', parsed.path)
if (parsed.scheme not in ('http', 'https') or parsed.netloc != 'arxiv.org'
or parsed.query or parsed.fragment or not match):
raise ValueError('Unexpected official arXiv link')
return match[1], match[2] or None
def without_links(node):
if node.tag in ('a', 'script', 'style'):
return ''
value = ''.join(without_links(n) if isinstance(n, Node) else n for n in node.children)
return ' '+value+' ' if node.tag in ('div', 'li', 'p', 'br') else value
def authors(display, year):
parts = display.rstrip(';').split(';') if year == 2014 else re.split(r',\s*(?:and\s+)?|\s+and\s+', display)
names = [clean(p) for p in parts]
if not names or any(not name for name in names):
raise ValueError('Missing author or unsupported author delimiter')
return names
def parse_page(html, year, evidence):
if year not in PAGES:
raise ValueError('Unreviewed ICLR archive year')
document = Document(html)
nodes = list(document.root.walk())
headings = [clean(n.text()) for n in nodes if n.tag in ('h1', 'h2', 'h3')]
if year == 2014:
if 'Conference Proceedings' not in headings or 'conference papers accepted' not in clean(document.root.text()):
raise ValueError('Unexpected ICLR 2014 accepted list')
elif (set(SECTIONS[year]) - set(headings)
or (year == 2016 and 'Accepted Papers (Conference Track)' not in headings)):
raise ValueError('Unexpected ICLR accepted sections')
entries = []
section = None
for index, node in enumerate(nodes):
if node.tag in ('h1', 'h2', 'h3'):
section = clean(node.text())
if year == 2014:
if node.tag != 'a' or not arxiv_link(node.attrs.get('href', '')):
continue
link = node
# This archived Google Sites page has an entry outside a paragraph.
# Authors can span several differently formatted italic spans.
# Read their whole paragraph, never only the first styled fragment.
display = None
for following in nodes[index+sum(1 for _ in link.walk()):]:
if following.tag == 'a' and arxiv_link(following.attrs.get('href', '')):
break
if following.tag in ('i', 'em') or (following.tag == 'p' and any(
n.tag in ('i', 'em') or 'font-style:italic' in n.attrs.get('style', '').replace(' ', '')
for n in following.walk())):
text = clean(following.text())
if text:
display = text
break
if not display:
raise ValueError('Missing explicit ICLR 2014 author span')
track, presentation = 'main', 'conference'
else:
if node.tag != 'li':
continue
links = [n for n in node.walk() if n.tag == 'a' and arxiv_link(n.attrs.get('href', ''))]
if not links:
continue
if len(links) != 1 or section not in SECTIONS[year]:
raise ValueError('Ambiguous paper link or unknown accepted section')
link, = links
display = clean(without_links(node)).lstrip(',').strip()
track, presentation = SECTIONS[year][section]
arxiv, version = arxiv_link(link.attrs['href'])
title = clean(link.text())
if not title:
raise ValueError('Empty official title')
entries.append({'arxiv': arxiv, 'version': version, 'title': title,
'authors': authors(display, year), 'authors_display': display,
'paper_url': link.attrs['href'], 'track': track,
'section': section, 'presentation': presentation})
# Check every arXiv occurrence, including links outside the expected layout.
occurrences = sum(n.tag == 'a' and bool(arxiv_link(n.attrs.get('href', ''))) for n in nodes)
if len(entries) != occurrences or not entries:
raise ValueError('Some official paper links were not parsed')
grouped = defaultdict(list)
for entry in entries:
grouped[(entry['track'], entry['arxiv'])].append(entry)
result = []
for (track, arxiv), variants in grouped.items():
first = variants[0]
if any((v['title'], v['authors']) != (first['title'], first['authors']) for v in variants):
raise ValueError('Repeated presentation has conflicting title or authors; review required')
presentations = sorted({v['presentation'] for v in variants})
result.append({'source': SOURCE, 'external_id': f'{year}/{track}/{arxiv}',
'url': PAGES[year][0], 'title': first['title'], 'abstract': None,
'authors': first['authors'], 'identifiers': {'arxiv': arxiv},
'venue': 'ICLR', 'venue_aliases': [], 'year': year, 'track': track,
'status': 'accepted', 'observed_at': evidence['observed_at'],
'raw_decision': 'listed in official ICLR accepted '+track+' list',
'metadata': {'source_evidence': evidence, 'source_variants': variants,
'presentations': presentations, 'decision_date_precision': 'not_supplied',
'identity_note': 'Official arXiv link, not title matching; validate canonical identity before import.',
'decision_evidence': 'Archived accepted list, not an original decision note.'},
'tags': [{'namespace': SOURCE+':presentation', 'value': value} for value in presentations]})
return result
def read_page(year, *, cache=None, snapshots=None):
if bool(cache) == bool(snapshots):
raise ValueError('Choose exactly one cache or frozen snapshot directory')
url = PAGES[year][0]
if snapshots:
root = Path(snapshots).resolve()
receipts = json.loads((root/'receipts.json').read_bytes())['receipts']
matches = [r for r in receipts if r['url'] == url]
if len(matches) != 1:
raise ValueError('Expected one exact official response receipt')
receipt, = matches
filename = Path(receipt['file'])
path = root/filename
if (filename.is_absolute() or '..' in filename.parts or not path.resolve().is_relative_to(root)
or receipt['status'] != 200):
raise ValueError('Unsafe or unsuccessful archive snapshot')
data = path.read_bytes()
if (len(data) > 8*1024**2 or len(data) != receipt['bytes']
or hashlib.sha256(data).hexdigest() != receipt['sha256']):
raise ValueError('Archive snapshot checksum or size differs')
observed = timestamp(receipt['finished_at'])
else:
data = fetch(url, cache, 8*1024**2, delay=1)
receipt = json.loads((Path(cache)/hashlib.sha256(url.encode()).hexdigest()).with_suffix('.json').read_bytes())
observed = timestamp(receipt['retrieved_at'])
evidence = {'url': url, 'sha256': hashlib.sha256(data).hexdigest(), 'bytes': len(data),
'file': 'evidence/'+hashlib.sha256(data).hexdigest()+'.html',
'observed_at': observed, 'http_status': 200, 'response_receipt': receipt}
return data, evidence
def collect(year, out, *, cache=None, snapshots=None):
if year not in PAGES:
raise ValueError('Only independently reviewed ICLR archive years are supported')
out = Path(out)
out.mkdir(parents=True, exist_ok=True)
with (out/'iclr-archive.collect.lock').open('a') as lock:
fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB)
report = out/f'iclr-archive-{year}.json'
if report.exists():
raise FileExistsError('Existing completed archive output must be inspected, not overwritten')
data, evidence = read_page(year, cache=cache, snapshots=snapshots)
records = parse_page(data.decode('utf-8'), year, evidence)
counts = Counter(r['track'] for r in records)
if dict(counts) != PAGES[year][1]:
raise ValueError('Distinct archive entries differ from reviewed inventory')
files = []
with tempfile.TemporaryDirectory(prefix='.iclr-archive-', dir=out) as temporary:
stage = Path(temporary)
(stage/'evidence').mkdir()
(stage/evidence['file']).write_bytes(data)
for track in sorted(counts):
group = [r for r in records if r['track'] == track]
path = stage/f'iclr-archive-{year}-{track}.jsonl'
path.write_text(''.join(json.dumps(r, ensure_ascii=False)+'\n' for r in group))
manifest = {'source': SOURCE, 'parser_version': 1, 'venue': 'ICLR', 'year': year,
'track': track, 'count': len(group), 'file': str(out/path.name),
'file_sha256': hashlib.sha256(path.read_bytes()).hexdigest(),
'list_url': PAGES[year][0], 'status': 'partial', 'missing_abstract_count': len(group)}
path.with_suffix('.manifest.json').write_text(json.dumps(manifest, ensure_ascii=False, indent=2)+'\n')
files.append(manifest)
result = {'source': SOURCE, 'year': year, 'records': len(records), 'files': files,
'source_evidence': evidence, 'database_written': False, 'pdfs_downloaded': False,
'status': 'collected_pending_identity_review',
'note': 'Accepted list only. Oral/poster are presentation evidence; absent papers are not rejected. '
'ICLR2014 workshop and other unlisted tracks remain outside these reviewed pages.'}
(stage/report.name).write_text(json.dumps(result, ensure_ascii=False, indent=2)+'\n')
(out/'evidence').mkdir(exist_ok=True)
for path in (stage/'evidence').iterdir():
path.replace(out/'evidence'/path.name)
for path in stage.iterdir():
if path.is_file() and path.name != report.name:
path.replace(out/path.name)
(stage/report.name).replace(report)
return result
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog)
parser.add_argument('--year', type=int, choices=sorted(PAGES), required=True)
parser.add_argument('--out', required=True)
source = parser.add_mutually_exclusive_group(required=True)
source.add_argument('--cache')
source.add_argument('--snapshots')
args = parser.parse_args(argv)
print(json.dumps(collect(args.year, args.out, cache=args.cache, snapshots=args.snapshots), ensure_ascii=False))
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"""Reproducible early WWW metadata; unresolved program entries stay outside imports."""
import argparse
from collections import defaultdict
import hashlib
from html.parser import HTMLParser
import json
from pathlib import Path
import re
import tempfile
from urllib.parse import urljoin, urlsplit
from paper_atlas.io.html import Document, clean
from paper_atlas.io.http import fetch
ROOT = 'https://archives.iw3c2.org/'
SPRING = ROOT+'www3/proceedings/'
FALL = ROOT+'www2/Proceedings/WWW2_Proceedings.html'
SEEDS = [ROOT+'www1/PrelimProcs.html', ROOT+'www1/Proceedings.html', FALL,
SPRING+'proceedings.html', *[SPRING+'papers/'+x+'.html' for x in ('author','session','abstract')],
*[SPRING+'posters/'+x+'.html' for x in ('author','abstract')]]
def decode(raw):
try:
return raw.decode('utf-8-sig'), 'utf-8'
except UnicodeDecodeError:
return raw.decode('iso-8859-1'), 'iso-8859-1 fallback; original bytes retained'
def text(html):
return re.sub(r'[ \t\r\n\f\v]+',' ',Document(html).root.text()).strip(' \t\r\n\f\v')
def anchors(html):
return [(n.attrs.get('href',''),clean(n.text())) for n in Document(html).root.walk() if n.tag=='a']
def source_url(url):
p=urlsplit(url)
if p.scheme!='https' or p.netloc!='archives.iw3c2.org' or p.query or p.fragment or not p.path.endswith('.html'):
raise ValueError('Only exact official archive HTML source URLs are allowed')
return url
class Sources:
def __init__(self, directory, expected_sha256):
self.root=Path(directory).resolve();manifest=self.root/'manifest.json';raw=manifest.read_bytes()
if hashlib.sha256(raw).hexdigest()!=expected_sha256:
raise ValueError('Source cache manifest checksum mismatch')
self.rows={};self.used=set()
for row in json.loads(raw)['sources']:
url=source_url(row['url'])
if url in self.rows or row.get('status')!=200:
raise ValueError('Duplicate or incomplete source response')
p=self.root/row['file']
if p.is_symlink() or p.parent!=self.root or not p.is_file():
raise ValueError('Source cache paths must be plain files directly within the cache')
data=p.read_bytes()
if len(data)>2*1024**2 or len(data)!=row['bytes'] or hashlib.sha256(data).hexdigest()!=row['sha256']:
raise ValueError('Source response checksum or size mismatch')
self.rows[url]={'raw':data,'receipt':row}
def read(self,url):
source_url(url)
if url not in self.rows:
raise ValueError('Required source missing from cache: '+url)
self.used.add(url)
return decode(self.rows[url]['raw'])[0]
def proof(self,urls):
return [{'url':url,'sha256':self.rows[url]['receipt']['sha256'],
'encoding':decode(self.rows[url]['raw'])[1]} for url in sorted(set(urls))]
def download_sources(http_cache, directory):
directory=Path(directory)
if directory.exists():
raise ValueError('Refusing to overwrite a source snapshot')
directory.mkdir(parents=True)
responses={url:fetch(url,http_cache,2*1024**2) for url in SEEDS}
html=decode(responses[FALL])[0]
for href,label in anchors(html):
if href!='Author_Inst.html' and href.endswith('.html'):
url=source_url(urljoin(FALL,href))
if not url.startswith(ROOT+'www2/Proceedings/'):
raise ValueError('Unexpected fall category source')
responses[url]=fetch(url,http_cache,2*1024**2)
receipts=[]
for i,(url,raw) in enumerate(sorted(responses.items())):
name='source-'+str(i).zfill(2)+'.html';(directory/name).write_bytes(raw)
receipts.append({'url':url,'status':200,'file':name,'bytes':len(raw),'sha256':hashlib.sha256(raw).hexdigest()})
manifest=directory/'manifest.json';manifest.write_text(json.dumps({'sources':receipts},indent=2)+'\n')
return hashlib.sha256(manifest.read_bytes()).hexdigest()
def identity(href,track):
url=urljoin(SPRING+track+'/',href);p=urlsplit(url)
match=re.fullmatch(r'/www3/proceedings/'+track+r'/(\d+)/[^?#]+',p.path)
if p.scheme=='https' and p.netloc=='archives.iw3c2.org' and not p.query and not p.fragment and match:
return match[1],url
return None
class AuthorIndex(HTMLParser):
def __init__(self,html,track):
super().__init__(convert_charrefs=True);self.track=track;self.name='';self.bold=None;self.link=None;self.link_text=[]
self.entries=defaultdict(lambda:{'authors':[],'urls':set(),'titles':set()});self.feed(html)
def handle_starttag(self,tag,attrs):
if tag=='b':self.bold=[]
if tag=='a':self.link=dict(attrs).get('href');self.link_text=[]
def handle_data(self,data):
if self.bold is not None:self.bold.append(data)
if self.link is not None:self.link_text.append(data)
def handle_endtag(self,tag):
if tag=='b' and self.bold is not None:
self.name=clean(''.join(self.bold));self.bold=None
if tag=='a' and self.link is not None:
own=identity(self.link,self.track)
if own:
key,url=own;entry=self.entries[key];entry['urls'].add(url);entry['titles'].add(clean(''.join(self.link_text)))
if not self.name:raise ValueError('Paper link has no archive author context')
if self.name not in entry['authors']:entry['authors'].append(self.name)
self.link=None
def sections(html):
"""Use explicit h3 boundaries; old HTML omits many p/li closing tags."""
result=[]
for chunk in re.split(r'<h3\b[^>]*>',html,flags=re.I)[1:]:
parts=re.split(r'</h3\s*>',chunk,maxsplit=1,flags=re.I)
if len(parts)!=2:raise ValueError('Unclosed archive entry heading')
heading,body=parts
body=re.split(r'<(?:hr|h2|address)\b',body,maxsplit=1,flags=re.I)[0]
author=re.search(r'<i\b[^>]*>(.*?)</i\s*>',body,re.I|re.S)
paragraphs=[]
for paragraph in re.findall(r'<p\b[^>]*>(.*?)(?=</p\s*>|<p\b|$)',body,re.I|re.S):
value=text(paragraph)
if value and not value.casefold().startswith('keywords:'):paragraphs.append(value)
result.append({'heading':heading,'title':text(heading),'abstract':'\n\n'.join(paragraphs)or None,
'author_byline_raw':text(author[1])if author else None})
if not result:raise ValueError('No explicit archive entry headings')
return result
def reviewed_posters(sources, path, expected_sha256, cache_sha256):
if path is None:
if expected_sha256:raise ValueError('Reviewed poster path required')
return {},None
raw=Path(path).read_bytes()
if hashlib.sha256(raw).hexdigest()!=expected_sha256:raise ValueError('Reviewed poster checksum mismatch')
review=json.loads(raw)
if set(review)!={'format','source_cache_sha256','records'} or review['format']!=1 or review['source_cache_sha256']!=cache_sha256:
raise ValueError('Reviewed poster snapshot binding differs')
if not isinstance(review['records'],list) or not 0<len(review['records'])<=100:
raise ValueError('Bounded nonempty poster review required')
result={}
for row in review['records']:
if set(row)!={'entry_id','individual_url','individual_sha256','title','authors','author_source','reason','missing_abstract_reason'}:
raise ValueError('Unexpected reviewed poster fields')
key=row['entry_id'];own=identity(row['individual_url'],'posters')
if not isinstance(key,str) or not own or own[0]!=key or key in result:
raise ValueError('Reviewed poster identity duplicated or outside canonical entry')
if row['author_source'] not in ('canonical_byline','author_index') or not isinstance(row['authors'],list) or not row['authors'] or any(not isinstance(a,str) or not a.strip()for a in row['authors']):
raise ValueError('Explicit author evidence required')
if len(set(row['authors']))!=len(row['authors']) or not isinstance(row['reason'],str) or not row['reason'].strip():
raise ValueError('Reviewed author order/reason invalid')
if sources.rows.get(own[1],{}).get('receipt',{}).get('sha256')!=row['individual_sha256']:
raise ValueError('Individual poster page checksum differs')
page=sources.read(own[1]);headings=re.findall(r'<h1\b[^>]*>(.*?)</h1\s*>',page,re.I|re.S)
if len(headings)!=1 or text(headings[0])!=row['title']:
raise ValueError('Reviewed title differs from exact canonical H1')
header=re.split(r'</h1\s*>',page,maxsplit=1,flags=re.I)[1]
header=re.split(r'<h[23]\b',header,maxsplit=1,flags=re.I)[0]
header=re.split(r'\b(?:keywords|abstract)\s*:',text(header),maxsplit=1,flags=re.I)[0]
if row['author_source']=='canonical_byline' and any(a.casefold() not in header.casefold()for a in row['authors']):
raise ValueError('Reviewed author absent from canonical byline region')
result[key]={**row,'canonical_byline_region_raw':header}
return result,hashlib.sha256(raw).hexdigest()
def reviewed_row(sources,key,url,item,authors,review):
if url!=review['individual_url']:
raise ValueError('Reviewed canonical page differs from abstract-entry URL')
if authors and authors['urls']!={url}:
raise ValueError('Reviewed poster author-index URL disagrees')
if review['author_source']=='author_index':
names=[]
for name in authors['authors']if authors else []:
parts=name.split(',');names.append(clean(parts[1]+' '+parts[0])if len(parts)==2 else name)
if names!=review['authors']:raise ValueError('Reviewed author-index evidence differs')
missing=review['missing_abstract_reason']
if not isinstance(missing,str) or bool(missing.strip())==bool(item['abstract']):
raise ValueError('Missing abstract requires explicit reason; never invent a summary')
urls=[SPRING+'posters/author.html',SPRING+'posters/abstract.html',url]
return {'source':'www_archive','external_id':'www3:posters:'+key,'url':url,'title':review['title'],
'abstract':item['abstract'],'authors':review['authors'],'identifiers':{},'venue':'WWW','year':1995,
'track':'poster','event_key':'www-1995-spring','status':'accepted','raw_decision':'listed in official posters proceedings',
'metadata':{'entry_id':key,'source_evidence':sources.proof(urls),'abstract_heading_title_raw':item['title'],
'author_byline_raw':item['author_byline_raw'],'author_index_raw':authors['authors']if authors else [],
'author_index_titles_raw':sorted(authors['titles'])if authors else [],'abstract_href_raw':url,
'author_order':review['author_source'],'reviewed_poster_identity':review,
'missing_abstract_reason':missing or None},
'tags':[{'namespace':'www_archive:proceedings_section','value':'posters'}]}
def spring_rows(sources,track,reviews=None):
base=SPRING+track+'/';author_url=base+'author.html';abstract_url=base+'abstract.html'
authors=AuthorIndex(sources.read(author_url),track).entries
listing=sections(sources.read(abstract_url));by_id={};held=[];session={}
if track=='papers':
session_url=base+'session.html'
for href,title in anchors(sources.read(session_url)):
own=identity(href,track)
if own:
key,url=own
if key in session:raise ValueError('Duplicate main session entry ID')
session[key]=url
for item in listing:
links=[identity(h,track)for h,t in anchors(item['heading'])if identity(h,track)]
if len(links)!=1:
held.append({'reason':'unverified_heading_identity','evidence':abstract_url,'candidate':item});continue
key,url=links[0]
if key in by_id:raise ValueError('Duplicate abstract entry ID')
by_id[key]=(url,item)
if not by_id:raise ValueError('No stable abstract entry IDs')
if track=='papers' and (set(authors)!=set(by_id) or set(session)!=set(by_id)):
raise ValueError('Main author/session/abstract entry ID sets disagree')
if set(authors)-set(by_id):raise ValueError('Author index has entries outside the abstract listing')
reviews=reviews or {}
if set(reviews)-set(by_id):raise ValueError('Reviewed poster outside abstract listing')
rows=[]
for key,(url,item) in by_id.items():
if key in reviews:
if track!='posters':raise ValueError('Reviews only apply to poster entries')
rows.append(reviewed_row(sources,key,url,item,authors.get(key),reviews[key]));continue
if key not in authors:
held.append({'reason':'abstract_entry_missing_linked_author_index','entry_id':key,'evidence':abstract_url,'candidate':item});continue
alternatives=authors[key]['urls']
if len(alternatives)!=1:raise ValueError('Ambiguous author-index paper URL')
canonical=next(iter(alternatives))
if track=='papers' and session[key]!=canonical:raise ValueError('Main author/session paper URLs disagree')
if url!=canonical and (track!='papers' or not re.search(r'\s',url)):
raise ValueError('Uncorroborated archive URL discrepancy')
if not item['abstract']:
held.append({'reason':'missing_abstract','entry_id':key,'evidence':abstract_url,'candidate':item});continue
if item['title'].casefold() not in {t.casefold() for t in authors[key]['titles']}:
held.append({'reason':'abstract_and_author_index_titles_disagree','entry_id':key,'evidence':abstract_url,'candidate':item,'author_index_titles':sorted(authors[key]['titles'])});continue
names=[]
for name in authors[key]['authors']:
parts=name.split(',')
names.append(clean(parts[1]+' '+parts[0])if len(parts)==2 else name)
proof_urls=[author_url,abstract_url]+([session_url]if track=='papers'else[])
rows.append({'source':'www_archive','external_id':'www3:'+track+':'+key,'url':canonical,
'title':item['title'],'abstract':item['abstract'],'authors':names,'identifiers':{},
'venue':'WWW','year':1995,'track':'main'if track=='papers'else'poster','event_key':'www-1995-spring',
'status':'accepted','raw_decision':'listed in official '+track+' proceedings',
'metadata':{'entry_id':key,'source_evidence':sources.proof(proof_urls),
'author_index_raw':authors[key]['authors'],'author_index_titles_raw':sorted(authors[key]['titles']),'author_order':'archive author-index order, not original byline rank',
'author_byline_raw':item['author_byline_raw'],'abstract_href_raw':url,
'url_corroborated_by_author_and_session':url!=canonical},
'tags':[{'namespace':'www_archive:proceedings_section','value':track}]})
return rows,held,{'abstract_entries':len(by_id),'linked_author_entries':len(authors),'ready':len(rows),'held':len(held)}
def early_review(sources):
held=[];url=ROOT+'www1/PrelimProcs.html';html=sources.read(url)
for ordinal,chunk in enumerate(re.split(r'<li\b[^>]*>',html,flags=re.I)[1:],1):
title=re.search(r'<em>Title:</em>\s*<b>(.*?)</b>',chunk,re.I|re.S)
if not title:raise ValueError('Unclassified first-conference entry')
names=re.findall(r'<em>Author:</em>(.*?)(?=<br\b)',chunk,re.I|re.S)
held.append({'reason':'formal_presentation_scope_and_count_need_review','event_key':'www-1994-spring',
'ordinal':ordinal,'evidence':url,'candidate':{'title':text(title[1]),
'authors_raw':[re.sub(r'\s*<[^>]+>','',text(n)).strip()for n in names],
'keywords_raw':text(re.search(r'<em>Keywords:</em>(.*?)(?=<br\b)',chunk,re.I|re.S)[1]) if re.search(r'<em>Keywords:</em>(.*?)(?=<br\b)',chunk,re.I|re.S)else None},
'source_evidence':sources.proof([url])})
if not held:raise ValueError('First-conference presentation listing empty')
category_urls={}
for href,label in anchors(sources.read(FALL)):
if href!='Author_Inst.html' and href.endswith('.html'):
category_url=source_url(urljoin(FALL,href))
if not category_url.startswith(ROOT+'www2/Proceedings/'):raise ValueError('Unexpected fall category')
category_urls[category_url]=label
if not category_urls:raise ValueError('Fall archive category listing empty')
for url,label in sorted(category_urls.items()):
html=sources.read(url)
for ordinal,chunk in enumerate(re.split(r'<dt\b[^>]*>',html,flags=re.I)[1:],1):
fields=re.split(r'<dd\b[^>]*>',chunk,maxsplit=1,flags=re.I)
title=text(fields[0]);raw_byline=text(re.split(r'</dl\b',fields[1],maxsplit=1,flags=re.I)[0]) if len(fields)==2 else None
if title:
held.append({'reason':'mixed_program_category_not_verified_paper_acceptance','event_key':'www-1994-fall',
'category':label,'ordinal':ordinal,'evidence':url,'candidate':{'title':title,'authors_raw':raw_byline},
'source_evidence':sources.proof([FALL,url])})
return held,{'first_conference_fields':sum(r['event_key']=='www-1994-spring'for r in held),'fall_categories':len(category_urls),
'fall_program_entries':sum(r['event_key']=='www-1994-fall'for r in held)}
def collect(source_cache,cache_sha256,out,*,reviewed=None,reviewed_sha256=None):
out=Path(out)
if out.exists():raise ValueError('Refusing to overwrite an existing normalized batch')
sources=Sources(source_cache,cache_sha256);groups={};held=[];counts={}
reviews,review_sha=reviewed_posters(sources,reviewed,reviewed_sha256,cache_sha256)
for track in ('papers','posters'):
rows,review,counts[track]=spring_rows(sources,track,reviews if track=='posters'else None);groups[track]=rows;held.extend(review)
review,counts['earlier']=early_review(sources);held.extend(review)
for item in held:
if 'source_evidence' not in item:item['source_evidence']=sources.proof([item['evidence']])
out.parent.mkdir(parents=True,exist_ok=True)
with tempfile.TemporaryDirectory(prefix='.www-archive-',dir=out.parent)as tmp:
stage=Path(tmp);queue=[]
for track,rows in groups.items():
if not rows:continue
filename='www-1995-spring-'+('main'if track=='papers'else'poster')+'.jsonl';raw=''.join(json.dumps(r,ensure_ascii=False)+'\n'for r in rows).encode();(stage/filename).write_bytes(raw)
manifest={'source':'www_archive','parser_version':2 if review_sha else 1,'venue':'WWW','year':1995,'track':rows[0]['track'],'event_key':'www-1995-spring',
'list_url':SPRING+track+'/abstract.html','count':len(rows),'status':'partial','file_sha256':hashlib.sha256(raw).hexdigest(),
'missing_abstract_count':sum(not bool((r['abstract']or '').strip())for r in rows),'source_listing_count':counts[track]['abstract_entries'],'held_entry_count':counts[track]['held'],'source_cache_sha256':cache_sha256,'scope':'Verified linked archive entries; held entries and other event tracks excluded, not complete event coverage.'}
(stage/filename).with_suffix('.manifest.json').write_text(json.dumps(manifest,indent=2)+'\n');queue.append(str(out/filename))
(stage/'review-candidates.jsonl').write_text(''.join(json.dumps(r,ensure_ascii=False)+'\n'for r in held))
report={'status':'normalized_not_imported','source_cache_sha256':cache_sha256,'counts':counts,'ready':sum(len(r)for r in groups.values()),'held':len(held),
'source_evidence':sources.proof(sources.used),'files':queue,'scope':'Early WWW archive only; no PDF fetching, no rejected/withdrawn inference, no database access. Event-aware importer required.'}
if review_sha:report['reviewed_posters_sha256']=review_sha
(stage/'report.json').write_text(json.dumps(report,ensure_ascii=False,indent=2)+'\n')
(stage/'import-queue.json').write_text(json.dumps({'files':queue},indent=2)+'\n')
stage.rename(out)
return report
def main(argv=None,*,prog=None):
p=argparse.ArgumentParser(prog=prog);p.add_argument('--source-cache',required=True);p.add_argument('--source-cache-sha256');p.add_argument('--http-cache');p.add_argument('--out',required=True)
p.add_argument('--reviewed-posters');p.add_argument('--reviewed-posters-sha256')
args=p.parse_args(argv)
if bool(args.http_cache)==bool(args.source_cache_sha256):p.error('Choose a fresh --http-cache download or an existing --source-cache-sha256 snapshot')
sha=download_sources(args.http_cache,args.source_cache)if args.http_cache else args.source_cache_sha256
if bool(args.reviewed_posters)!=bool(args.reviewed_posters_sha256):p.error('Reviewed poster file and SHA256 must be supplied together')
print(json.dumps(collect(args.source_cache,sha,args.out,reviewed=args.reviewed_posters,reviewed_sha256=args.reviewed_posters_sha256),ensure_ascii=False),flush=True)
if __name__=='__main__':main()
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@@ -1 +1 @@
"""Offline, evidence-bound preparation of metadata for separate ingestion."""
"""Evidence-bound identity preparation and independent type/tag annotations."""
+218
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@@ -0,0 +1,218 @@
"""Append-only tag/type assertions and explicit retractions; no inferred labels."""
import argparse
from contextlib import closing
from importlib.resources import files
import json
import re
from urllib.parse import urlparse
from paper_atlas.db.backend import database_arguments, inserted_id, open_read_connection, open_store
from paper_atlas.db.submissions import timestamp
TABLE = 'annotation_events'
MIGRATION = 'annotation_events_v1'
COLUMNS = ('id', 'request_id', 'paper_id', 'original_paper_id', 'kind', 'namespace',
'value', 'source_record_id', 'evidence_key', 'evidence_url', 'reason',
'actor', 'observed_at', 'retracts_id')
ACTIVE = '''a.retracts_id IS NULL AND NOT EXISTS
(SELECT 1 FROM annotation_events removed WHERE removed.retracts_id=a.id)'''
def available(conn):
if getattr(conn, 'postgres', False):
if hasattr(conn, 'has_table'):
return conn.has_table(TABLE)
return bool(conn.execute("SELECT 1 FROM information_schema.tables WHERE table_schema=current_schema() AND table_name=?", (TABLE,)).fetchone())
return bool(conn.execute("SELECT 1 FROM sqlite_master WHERE type='table' AND name=?", (TABLE,)).fetchone())
def _begin_write(conn):
if not getattr(conn, 'postgres', False) and not conn.in_transaction:
conn.execute('BEGIN IMMEDIATE')
def initialize(conn):
"""Explicit transactional schema extension; does not rescan or rewrite papers."""
_begin_write(conn)
exists = available(conn)
marker = conn.execute('SELECT 1 FROM schema_migrations WHERE name=?', (MIGRATION,)).fetchone()
if exists != bool(marker):
raise RuntimeError('Annotation table/upgrade marker mismatch; inspect before changing schema')
if exists:
result = conn.execute('SELECT * FROM annotation_events LIMIT 0')
description = result.cursor.description if getattr(conn, 'postgres', False) else result.description
if tuple(d[0] for d in description) != COLUMNS:
raise RuntimeError('Unexpected annotation schema')
return False
ddl = files('paper_atlas.db').joinpath('annotations.sql').read_text()
if getattr(conn, 'postgres', False):
ddl = re.sub(r'\bINTEGER\b', 'BIGINT', ddl)
ddl = re.sub(r'\bTEXT\b', 'TEXT COLLATE "C"', ddl)
ddl = ddl.replace('id BIGINT PRIMARY KEY', 'id BIGINT GENERATED BY DEFAULT AS IDENTITY PRIMARY KEY', 1)
for statement in ddl.split(';'):
if statement.strip():
conn.execute(statement)
conn.execute('INSERT INTO schema_migrations(name) VALUES(?)', (MIGRATION,))
return True
def _text(value, name, limit=512):
if not isinstance(value, str) or not value.strip() or len(value) > limit:
raise ValueError(name + ' must be nonempty text of at most ' + str(limit) + ' characters')
return value
def _id(value, name):
if type(value) is not int or value <= 0:
raise ValueError(name + ' must be a positive integer')
return value
def _url(value):
if value is not None:
_text(value, 'evidence_url', 4096)
parsed = urlparse(value)
if parsed.scheme not in ('https', 'http') or not parsed.hostname or parsed.username or parsed.password:
raise ValueError('evidence_url must be an HTTP(S) URL without credentials')
return value
def _require(conn):
if not available(conn) or not conn.execute('SELECT 1 FROM schema_migrations WHERE name=?', (MIGRATION,)).fetchone():
raise RuntimeError('Run paper-atlas annotate init explicitly before adding annotations')
def _row(row):
return dict(zip(COLUMNS, (row[i] for i in range(len(COLUMNS)))))
def _replay(conn, request_id, payload):
old = conn.execute('SELECT * FROM annotation_events WHERE request_id=?', (request_id,)).fetchone()
if old is None:
return None
old = _row(old)
if any(old[k] != value for k, value in payload.items()):
raise ValueError('request_id already identifies different annotation content')
return old['id']
def assert_annotation(conn, paper, kind, namespace, value, *, request_id, evidence_key,
reason, actor, evidence_url=None, source_record_id=None):
_begin_write(conn)
_require(conn)
paper = _id(paper, 'paper')
if kind not in ('tag', 'research_type'):
raise ValueError('kind must be tag or research_type')
_text(namespace, 'namespace', 128)
if not re.fullmatch(r'[a-z][a-z0-9_]*:[a-z][a-z0-9_.-]*', namespace):
raise ValueError('namespace must have an explicit source:scope')
payload = dict(original_paper_id=paper, kind=kind, namespace=namespace,
value=_text(value, 'value'), request_id=_text(request_id, 'request_id', 128),
source_record_id=source_record_id, evidence_key=_text(evidence_key, 'evidence_key', 256),
reason=_text(reason, 'reason', 8192), actor=_text(actor, 'actor', 256),
evidence_url=_url(evidence_url), retracts_id=None)
if source_record_id is not None:
_id(source_record_id, 'source_record_id')
replay = _replay(conn, request_id, payload)
if replay is not None:
return replay
if not conn.execute('SELECT 1 FROM papers WHERE id=?', (paper,)).fetchone():
raise ValueError('Existing canonical paper required; no automatic identity merge')
prefix = namespace.split(':', 1)[0]
if prefix != 'custom' and source_record_id is None:
raise ValueError('Platform annotations require their own source record')
if source_record_id is not None:
source = conn.execute('''SELECT r.paper_id,s.name FROM source_records r
JOIN sources s ON s.id=r.source_id WHERE r.id=?''', (source_record_id,)).fetchone()
if not source or source[0] != paper or (prefix != 'custom' and prefix != source[1]):
raise ValueError('Annotation source record/namespace must belong to this paper and platform')
payload.update(paper_id=paper, observed_at=timestamp())
fields = tuple(payload)
return inserted_id(conn, 'INSERT INTO annotation_events(' + ','.join(fields) + ') VALUES(' +
','.join('?' for _ in fields) + ')', tuple(payload[k] for k in fields))
def retract_annotation(conn, event, *, request_id, reason, actor, evidence_url=None, custom_only=False):
_begin_write(conn)
_require(conn)
event = _id(event, 'event')
payload = dict(request_id=_text(request_id, 'request_id', 128), retracts_id=event,
reason=_text(reason, 'reason', 8192), actor=_text(actor, 'actor', 256), evidence_url=_url(evidence_url))
target = conn.execute('SELECT * FROM annotation_events WHERE id=?', (event,)).fetchone()
if target is None or target[-1] is not None:
raise ValueError('Retraction must reference an existing assertion')
target = _row(target)
if custom_only and not target['namespace'].startswith('custom:'):
raise ValueError('Manual CLI cannot retract platform evidence')
replay = _replay(conn, request_id, payload)
if replay is not None:
return replay
if conn.execute('SELECT 1 FROM annotation_events WHERE retracts_id=?', (event,)).fetchone():
raise ValueError('Assertion already retracted; its history is retained')
payload.update({k: target[k] for k in ('paper_id', 'original_paper_id', 'kind', 'namespace', 'value', 'source_record_id', 'evidence_key')})
payload['observed_at'] = timestamp()
fields = tuple(payload)
return inserted_id(conn, 'INSERT INTO annotation_events(' + ','.join(fields) + ') VALUES(' +
','.join('?' for _ in fields) + ')', tuple(payload[k] for k in fields))
def observations(conn, paper, *, kind=None, history=False):
if not available(conn):
return []
where = ['a.paper_id=?']; params = [_id(paper, 'paper')]
if not history:
where.append(ACTIVE)
if kind is not None:
if kind not in ('tag', 'research_type'):
raise ValueError('Invalid annotation kind')
where.append('a.kind=?'); params.append(kind)
return [_row(r) for r in conn.execute('SELECT a.* FROM annotation_events a WHERE ' +
' AND '.join(where) + ' ORDER BY a.id', params)]
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog, description='显式初始化、追加或撤回带证据的自定义标签和研究类型')
actions = parser.add_subparsers(dest='action', required=True)
for action in ('init', 'assert', 'retract', 'list'):
p = actions.add_parser(action)
database_arguments(p)
if action in ('assert', 'retract'):
for field in ('request-id', 'reason', 'actor'):
p.add_argument('--' + field, required=True)
p.add_argument('--evidence-url')
if action in ('assert', 'list'):
p.add_argument('--paper', type=int, required=True)
p.add_argument('--kind', choices=('tag', 'research_type'), required=action == 'assert')
if action == 'assert':
for field in ('namespace', 'value', 'evidence-key'):
p.add_argument('--' + field, required=True)
p.add_argument('--source-record', type=int)
if action == 'retract':
p.add_argument('--event', type=int, required=True)
if action == 'list':
p.add_argument('--history', action='store_true')
args = parser.parse_args(argv)
if args.action == 'list':
with closing(open_read_connection(args.db, pg_service=args.pg_service, pg_schema=args.pg_schema)) as conn:
result = observations(conn, args.paper, kind=args.kind, history=args.history)
else:
if args.action == 'assert' and not args.namespace.startswith('custom:'):
parser.error('Manual CLI requires custom:* namespace; platform assertions use validated source APIs')
with closing(open_store(args.db, pg_service=args.pg_service, pg_schema=args.pg_schema).conn) as conn:
try:
if not getattr(conn, 'postgres', False):
conn.commit()
conn.execute('BEGIN IMMEDIATE')
if args.action == 'init':
result = {'initialized': initialize(conn)}
else:
kwargs = dict(request_id=args.request_id, reason=args.reason, actor=args.actor, evidence_url=args.evidence_url)
event = (assert_annotation(conn, args.paper, args.kind, args.namespace, args.value,
evidence_key=args.evidence_key, source_record_id=args.source_record, **kwargs)
if args.action == 'assert' else retract_annotation(conn, args.event, custom_only=True, **kwargs))
result = {'event_id': event}
conn.commit()
except BaseException:
conn.rollback()
raise
print(json.dumps(result, ensure_ascii=False, indent=2))
+15
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@@ -0,0 +1,15 @@
CREATE TABLE annotation_events (
id INTEGER PRIMARY KEY,
request_id TEXT NOT NULL UNIQUE,
paper_id INTEGER NOT NULL REFERENCES papers(id),
original_paper_id INTEGER NOT NULL,
kind TEXT NOT NULL CHECK(kind IN ('tag','research_type')),
namespace TEXT NOT NULL, value TEXT NOT NULL,
source_record_id INTEGER REFERENCES source_records(id),
evidence_key TEXT NOT NULL, evidence_url TEXT,
reason TEXT NOT NULL, actor TEXT NOT NULL, observed_at TEXT NOT NULL,
retracts_id INTEGER UNIQUE REFERENCES annotation_events(id),
CHECK(retracts_id IS NULL OR retracts_id<>id)
);
CREATE INDEX annotation_events_paper ON annotation_events(paper_id,kind,id);
CREATE INDEX annotation_events_label ON annotation_events(kind,namespace,value,paper_id);
+38
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@@ -0,0 +1,38 @@
"""Retain reviewed event scopes when a source refresh repeats a whole-volume label."""
import json
KEY = 'edition_scope_curation_v1'
def preserve(metadata, previous):
old = json.loads(previous).get(KEY) if previous else None
if KEY in metadata and metadata[KEY] != old:
raise ValueError('Source import cannot supply or replace reviewed edition scope')
if old is not None:
metadata[KEY] = old
return metadata
def resolve(c, record, external, venue, year, track, event_key):
row = c.execute('SELECT metadata_json FROM source_records WHERE id=?', (record,)).fetchone()
entries = json.loads(row[0]).get(KEY, []) if row else []
if not isinstance(entries, list):
raise ValueError('Invalid reviewed edition scope')
applicable = []
for entry in entries:
if entry['external_id'] != external:
continue
old, target = entry['from'], entry['target']
if int(year) != old['year'] or venue not in entry['venue_names']:
continue
if track not in (old['track'], target['track']):
continue
if event_key is not None and event_key != old['event_key']:
continue
current = c.execute('SELECT venue_id,year,track,event_key FROM editions WHERE id=?', (target['edition_id'],)).fetchone()
if not current or [current[i] for i in range(4)] != [target[k] for k in ('venue_id','year','track','event_key')]:
raise ValueError('Reviewed target edition has changed')
applicable.append(target['edition_id'])
if len(applicable) > 1:
raise ValueError('Ambiguous reviewed edition scope')
return applicable[0] if applicable else None
+71
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@@ -0,0 +1,71 @@
"""Stable event identity within a venue/year/track, independent of paper identity."""
import json
import re
def has_event_key(c):
if getattr(c, 'postgres', False):
return bool(c.execute("SELECT 1 FROM information_schema.columns WHERE table_schema=current_schema() AND table_name='editions' AND column_name='event_key'").fetchone())
return any(row[1] == 'event_key' for row in c.execute('PRAGMA table_info(editions)'))
def validate_event_key(value):
if value is not None and (not isinstance(value, str) or
(value != '' and not re.fullmatch(r'[a-z0-9][a-z0-9._:-]{0,79}', value))):
raise ValueError('Invalid conference event_key')
return value
def pinned_www_fall(source, metadata):
from paper_atlas.collectors.dblp import XML_SHA
b = metadata.get('bibliography') or {}
urls = b.get('url') or []
return (source == 'dblp' and metadata.get('snapshot_sha256') == XML_SHA
and metadata.get('bibliographic_year') == 1995
and str(metadata.get('proceedings_key', '')).startswith('conf/www/')
and b.get('booktitle') == ['WWW (Fall)'] and len(urls) == 1
and urls[0].split('#')[0] == 'db/conf/www/www1995f.html')
def find_edition(store, venue_id, venue, year, track, record, external_id,
event_key=None, *, create=True):
c = store.conn
validate_event_key(event_key)
enabled = has_event_key(c) if getattr(store, 'event_identity', None) is None else store.event_identity
known_multi = venue.upper() == 'WWW' and int(year) in (1994, 1995)
source = c.execute('SELECT src.name,r.metadata_json FROM source_records r JOIN sources src ON src.id=r.source_id WHERE r.id=?', (record,)).fetchone()
inferred = ('www-1995-fall' if known_multi and int(year) == 1995 and source
and pinned_www_fall(source[0], json.loads(source[1])) else None)
if inferred:
if event_key is not None and event_key != inferred:
raise ValueError('event_key conflicts with pinned WWW Fall source evidence')
event_key = inferred
if not enabled:
if event_key or known_multi:
raise ValueError('Explicit event identity migration required before this conference import')
row = c.execute('SELECT id FROM editions WHERE venue_id=? AND year=? AND track=?', (venue_id, year, track)).fetchone()
if row or not create:
return row[0] if row else None
c.execute('INSERT INTO editions(venue_id,year,track) VALUES(?,?,?) ON CONFLICT DO NOTHING', (venue_id, year, track))
return c.execute('SELECT id FROM editions WHERE venue_id=? AND year=? AND track=?', (venue_id, year, track)).fetchone()[0]
anchored = c.execute('''SELECT DISTINCT e.id,e.event_key FROM editions e JOIN submissions s ON s.edition_id=e.id
JOIN submission_sources ss ON ss.submission_id=s.id WHERE e.venue_id=? AND e.year=? AND e.track=?
AND ss.source_record_id=? AND ss.source_submission_id=?''', (venue_id, year, track, record, external_id)).fetchall()
if len(anchored) > 1:
raise ValueError('Source record already has ambiguous conference events')
if anchored:
if event_key is not None and event_key != anchored[0][1]:
raise ValueError('Cannot move an existing source to another conference event')
event_key = anchored[0][1]
if event_key is None:
rows = c.execute('SELECT event_key FROM editions WHERE venue_id=? AND year=? AND track=?', (venue_id, year, track)).fetchall()
if len(rows) > 1 or any(row[0] for row in rows):
raise ValueError('Explicit event_key required; conference event is ambiguous')
event_key = ''
if known_multi and not event_key:
raise ValueError('Explicit event_key required for same-year WWW events')
row = c.execute('SELECT id FROM editions WHERE venue_id=? AND year=? AND track=? AND event_key=?', (venue_id, year, track, event_key)).fetchone()
if row or not create:
return row[0] if row else None
c.execute('INSERT INTO editions(venue_id,year,track,event_key) VALUES(?,?,?,?) ON CONFLICT DO NOTHING', (venue_id, year, track, event_key))
return c.execute('SELECT id FROM editions WHERE venue_id=? AND year=? AND track=? AND event_key=?', (venue_id, year, track, event_key)).fetchone()[0]
+2 -1
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@@ -29,7 +29,8 @@ CREATE TABLE IF NOT EXISTS venues (
CREATE TABLE IF NOT EXISTS editions (
id INTEGER PRIMARY KEY, venue_id INTEGER NOT NULL REFERENCES venues(id),
year INTEGER NOT NULL, track TEXT NOT NULL DEFAULT 'main',
UNIQUE(venue_id,year,track)
event_key TEXT NOT NULL DEFAULT '',
UNIQUE(venue_id,year,track,event_key)
);
CREATE TABLE IF NOT EXISTS venue_aliases (
venue_id INTEGER NOT NULL REFERENCES venues(id), alias TEXT NOT NULL,
+27 -3
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@@ -36,6 +36,8 @@ class Store:
self.conn.execute('PRAGMA synchronous=NORMAL')
self.conn.execute('PRAGMA cache_size=-32768')
migrate_sources(self.conn)
from paper_atlas.db.events import has_event_key
self.event_identity = has_event_key(self.conn)
def source(self,name,url):
self.conn.execute('INSERT INTO sources(name,homepage) VALUES(?,?) ON CONFLICT DO NOTHING',(name,url))
@@ -55,6 +57,9 @@ class Store:
c.execute('UPDATE identifiers SET paper_id=? WHERE paper_id=?',(target,other))
c.execute('UPDATE source_records SET paper_id=? WHERE paper_id=?',(target,other))
c.execute('UPDATE submissions SET paper_id=? WHERE paper_id=?',(target,other))
from paper_atlas.curation.annotations import available
if available(c):
c.execute('UPDATE annotation_events SET paper_id=? WHERE paper_id=?', (target,other))
c.execute('INSERT INTO paper_tags SELECT ?,tag_id,source_record_id,evidence_key FROM paper_tags WHERE paper_id=? ON CONFLICT DO NOTHING',(target,other))
c.execute('DELETE FROM paper_tags WHERE paper_id=?',(other,))
c.execute('UPDATE paper_merges SET surviving_paper_id=? WHERE surviving_paper_id=?',(target,other))
@@ -91,6 +96,8 @@ class Store:
if found:
matches.add(found[0])
old = c.execute('SELECT paper_id,title,abstract,retrieved_at,metadata_json FROM source_records WHERE source_id=? AND external_id=?',(source_id:=self.source(source,url),external_id)).fetchone()
from paper_atlas.db.edition_scopes import preserve
metadata = preserve(dict(metadata or {}), old[4] if old else None)
if old:
matches.add(old[0])
key = normalized(title)
@@ -148,15 +155,32 @@ class Store:
tag=c.execute('SELECT id FROM tags WHERE namespace=? AND value=?',(namespace,value)).fetchone()[0]
c.execute('INSERT INTO paper_tags VALUES(?,?,?,?) ON CONFLICT DO NOTHING',(paper,tag,record,evidence))
def decision(self,paper,record,venue,year,track,external_id,url,status,raw_value,aliases=None,identities=None,observed_at=None,decision_date=None,source_decision_id='',submitted_at=None,guard_status=False):
def decision(self,paper,record,venue,year,track,external_id,url,status,raw_value,aliases=None,identities=None,observed_at=None,decision_date=None,source_decision_id='',submitted_at=None,guard_status=False,event_key=None):
c = self.conn
# An already collected file may still call these exact pinned volumes
# IJCAI. Resolve membership before finding/creating an edition so a
# later refresh cannot split the repaired joint event again.
if venue == 'IJCAI' and year in (2018,2022) and track == 'main':
from paper_atlas.collectors.dblp import XML_SHA
evidence=c.execute('SELECT src.name,r.metadata_json FROM source_records r JOIN sources src ON src.id=r.source_id WHERE r.id=?',(record,)).fetchone()
if evidence and evidence[0] == 'dblp':
metadata=json.loads(evidence[1])
if (metadata.get('snapshot_sha256') == XML_SHA
and metadata.get('proceedings_key') == 'conf/ijcai/'+str(year)
and metadata.get('bibliographic_year') == year
and (metadata.get('bibliography') or {}).get('booktitle') in (['IJCAI'],['IJCAI/ECAI'])):
venue='ECAI+IJCAI'
aliases=sorted(set(aliases or []) | {'ECAI','IJCAI'})
existing=c.execute('SELECT id FROM venues WHERE lower(acronym)=lower(?)',(venue,)).fetchone()
if existing:venue_id=existing[0]
else:venue_id=inserted_id(c,"INSERT INTO venues(acronym,name,field,venue_type) VALUES(?,?,?,'conference')",(venue,venue,'unclassified'))
for alias in aliases or []:
c.execute('INSERT INTO venue_aliases VALUES(?,?) ON CONFLICT DO NOTHING',(venue_id,alias))
c.execute('INSERT INTO editions(venue_id,year,track) VALUES(?,?,?) ON CONFLICT DO NOTHING',(venue_id,int(year),track))
edition = c.execute('SELECT id FROM editions WHERE venue_id=? AND year=? AND track=?',(venue_id,int(year),track)).fetchone()[0]
from paper_atlas.db.events import find_edition
from paper_atlas.db.edition_scopes import resolve
edition = resolve(c,record,external_id,venue,year,track,event_key)
if edition is None:
edition = find_edition(self,venue_id,venue,int(year),track,record,external_id,event_key)
# A previous event in this row may already have merged the input paper.
paper=c.execute('SELECT paper_id FROM source_records WHERE id=?',(record,)).fetchone()[0]
submission=attach_submission(self,edition,paper,record,external_id,identities or [])
+1 -1
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@@ -4,7 +4,7 @@ import re
from paper_atlas.io.publication_ids import mlsys_id
PUBLICATIONS={'pmlr','acl_anthology','colm','neurips','mlsys','cvf','ecva','dblp'}
PUBLICATIONS={'pmlr','acl_anthology','colm','neurips','mlsys','cvf','ecva','dblp','aamas_proceedings'}
def timestamp(value=None):
+6 -1
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@@ -37,9 +37,14 @@ def backfill(db,files, *, pg_service=None, pg_schema=None):
seen.add(row['external_id'])
if any(row.get(key)!=manifest.get(key) for key in ('source','venue','year','track')):
raise ValueError('Evidence row differs from edition manifest')
if 'event_key' in manifest and row.get('event_key')!=manifest['event_key']:
raise ValueError('Event identity differs from manifest')
require_track_record(row, manifest)
record=c.execute('SELECT r.id,r.paper_id,r.metadata_json FROM source_records r JOIN sources s ON s.id=r.source_id WHERE s.name=? AND r.external_id=?',(row['source'],row['external_id'])).fetchone()
edition=c.execute('SELECT e.id FROM editions e JOIN venues v ON v.id=e.venue_id WHERE lower(v.acronym)=lower(?) AND e.year=? AND e.track=?',(row['venue'],row['year'],row['track'])).fetchone()
from paper_atlas.db.events import find_edition
venue=c.execute('SELECT id FROM venues WHERE lower(acronym)=lower(?)',(row['venue'],)).fetchone()
eid=find_edition(store,venue[0],row['venue'],row['year'],row['track'],record[0],row['external_id'],row.get('event_key'),create=False) if record and venue else None
edition=(eid,) if eid is not None else None
if not record or not edition:raise ValueError('Evidence backfill requires an already imported record and edition')
if not c.execute('SELECT 1 FROM submission_sources ss JOIN submissions s ON s.id=ss.submission_id WHERE ss.source_record_id=? AND ss.source_submission_id=? AND s.edition_id=?',(record[0],row['external_id'],edition[0])).fetchone():
raise ValueError('No existing submission to backfill')
+245
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@@ -0,0 +1,245 @@
"""Snapshot-bound reclassification of existing attempts, without reimport or merge."""
import argparse
from collections import Counter
from contextlib import closing
import hashlib
import json
from pathlib import Path
import re
from paper_atlas.db.backend import database_arguments, open_read_connection, open_store, inserted_id
from paper_atlas.db.edition_scopes import KEY
from paper_atlas.ingestion.event_identity import database_identity, digest, values
MARKER = 'edition_tracks_v1:'
def validate(inventory):
if (not isinstance(inventory, dict) or inventory.get('format') != 1
or not isinstance(inventory.get('records'), list) or not 0 < len(inventory['records']) <= 10000):
raise ValueError('Nonempty bounded reviewed inventory required')
ids = set(); records = set()
for row in inventory['records']:
required = {'submission_id','source_record_id','external_id','source','doi','from_edition_id',
'year','venue','venue_names','track','section','evidence_url','evidence_sha256'}
if not isinstance(row, dict) or set(row) != required:
raise ValueError('Unexpected inventory record fields')
for field in ('submission_id','source_record_id','from_edition_id','year'):
if type(row[field]) is not int or row[field] <= 0:
raise ValueError('Positive integer inventory identity required')
if row['submission_id'] in ids or row['source_record_id'] in records:
raise ValueError('Repeated submission/source identity in inventory')
ids.add(row['submission_id']); records.add(row['source_record_id'])
for field in ('external_id','source','doi','venue','section','evidence_url'):
if not isinstance(row[field], str) or not row[field].strip():
raise ValueError('Missing inventory evidence field')
if (not isinstance(row['venue_names'], list) or not row['venue_names']
or not all(isinstance(v,str) and v for v in row['venue_names'])
or row['venue'] not in row['venue_names']
or not re.fullmatch(r'[a-z][a-z0-9_]{0,63}', row['track'])
or not re.fullmatch(r'[0-9a-f]{64}', row['evidence_sha256'])
or not row['evidence_url'].startswith('https://')):
raise ValueError('Invalid scope or evidence binding')
return inventory
def bounded(c, sql, params):
rows = values(c.execute(sql+' LIMIT 100001', params))
if len(rows) > 100000:
raise ValueError('Protected scope exceeds bounded reclassification limit')
return rows
def protect(c, ids):
marks = ','.join('?' for _ in ids)
subs = 'SELECT id FROM submissions WHERE id IN ('+marks+')'
papers = 'SELECT paper_id FROM submissions WHERE id IN ('+marks+')'
decisions = 'SELECT id FROM decisions WHERE submission_id IN ('+subs+')'
queries = {
'submissions': ('SELECT id,paper_id,source_record_id,source_submission_id,submitted_at FROM submissions WHERE id IN ('+marks+') ORDER BY id'),
'submission_identifiers': ('SELECT scheme,value,submission_id FROM submission_identifiers WHERE submission_id IN ('+subs+') ORDER BY submission_id,scheme,value'),
'submission_sources': ('SELECT * FROM submission_sources WHERE submission_id IN ('+subs+') ORDER BY submission_id,source_record_id,source_submission_id'),
'decisions': ('SELECT * FROM decisions WHERE submission_id IN ('+subs+') ORDER BY id'),
'decision_sources': ('SELECT * FROM decision_sources WHERE decision_id IN ('+decisions+') ORDER BY decision_id,source_record_id,source_decision_id'),
'papers': ('SELECT * FROM papers WHERE id IN ('+papers+') ORDER BY id'),
'identifiers': ('SELECT * FROM identifiers WHERE paper_id IN ('+papers+') ORDER BY scheme,value'),
'paper_tags': ('SELECT * FROM paper_tags WHERE paper_id IN ('+papers+') ORDER BY paper_id,tag_id,evidence_key'),
}
from paper_atlas.curation.annotations import available
if available(c):
queries['annotation_events'] = 'SELECT * FROM annotation_events WHERE paper_id IN ('+papers+') ORDER BY id'
result = {table: {'rows':len(rows), 'sha256':digest(rows)} for table, sql in queries.items()
for rows in [bounded(c,sql,ids)]}
rows = bounded(c, 'SELECT r.* FROM source_records r WHERE r.id IN (SELECT source_record_id FROM submission_sources WHERE submission_id IN ('+subs+')) ORDER BY r.id', ids)
# Only the reviewed curation field may change; every other metadata value
# and all raw text/IDs/retrieval times remain protected.
for row in rows:
metadata = json.loads(row[8]); metadata.pop(KEY,None); row[8] = metadata
result['source_records'] = {'rows':len(rows), 'sha256':digest(rows)}
return result
def inspect(c, inventory):
validate(inventory); changes=[]; ids=tuple(sorted(r['submission_id']for r in inventory['records']))
original = sorted({r['from_edition_id'] for r in inventory['records']})
actual_ids = {r[0] for r in c.execute('SELECT id FROM submissions WHERE edition_id IN ('+','.join('?'for _ in original)+')', original)}
if actual_ids != set(ids):
raise ValueError('Inventory must cover every attempt in each original edition')
for row in inventory['records']:
current = c.execute('''SELECT s.edition_id,s.source_record_id,s.source_submission_id,s.paper_id,
e.venue_id,e.year,e.track,e.event_key,v.acronym,r.external_id,r.metadata_json,src.name
FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id
JOIN source_records r ON r.id=s.source_record_id JOIN sources src ON src.id=r.source_id WHERE s.id=?''',(row['submission_id'],)).fetchone()
if not current or [current[i]for i in (0,1,2,5,8,9,11)] != [row[k]for k in ('from_edition_id','source_record_id','external_id','year','venue','external_id','source')]:
raise ValueError('Submission identity/scope differs from inventory')
aliases={r[0]for r in c.execute('SELECT alias FROM venue_aliases WHERE venue_id=?',(current[4],))}|{current[8]}
if set(row['venue_names'])!=aliases:
raise ValueError('Venue names differ from current aliases')
metadata=json.loads(current[10])
if KEY in metadata:
raise ValueError('Existing curated scope requires explicit reconciliation')
if (metadata.get('record_identifiers') or {}).get('doi') != row['doi']:
raise ValueError('Stable DOI differs from reviewed source evidence')
links=values(c.execute('SELECT source_record_id,source_submission_id FROM submission_sources WHERE submission_id=?',(row['submission_id'],)))
if links != [[row['source_record_id'],row['external_id']]]:
raise ValueError('Shared-source attempt requires separate reconciliation')
decisions=values(c.execute('SELECT status FROM decisions WHERE submission_id=?',(row['submission_id'],)))
if not decisions or any(d[0]!='accepted'for d in decisions):
raise ValueError('Only publication observations can use this track correction')
target=c.execute('SELECT id FROM editions WHERE venue_id=? AND year=? AND track=? AND event_key=?',(current[4],current[5],row['track'],current[7])).fetchone()
if target and target[0] != current[0]:
if c.execute('SELECT 1 FROM submissions WHERE edition_id=? LIMIT 1',(target[0],)).fetchone():
raise ValueError('Nonempty target edition requires separate reconciliation')
if c.execute('SELECT 1 FROM submission_identifiers WHERE edition_id=? LIMIT 1',(target[0],)).fetchone():
raise ValueError('Target identifier scope already exists')
if c.execute('SELECT 1 FROM edition_sources WHERE edition_id=? LIMIT 1',(target[0],)).fetchone():
raise ValueError('Target coverage already exists; reconcile first')
if c.execute('SELECT 1 FROM submission_identifiers WHERE submission_id=? AND edition_id<>? LIMIT 1',(row['submission_id'],current[0])).fetchone():
raise ValueError('Existing identifier edition is inconsistent')
changes.append({**row,'from_track':current[6],'event_key':current[7], 'venue_id':current[4],
'target_edition_id':target[0]if target else None})
coverage=bounded(c,'SELECT * FROM edition_sources WHERE edition_id IN ('+','.join('?'for _ in original)+') ORDER BY edition_id,source_id,list_url',original)
if Counter(row[0]for row in coverage)!=Counter({edition:1 for edition in original}):
raise ValueError('Exactly one original coverage listing per edition required')
return {'records':changes, 'protected':protect(c,ids), 'coverage':coverage,
'editions':bounded(c,'SELECT * FROM editions WHERE id IN ('+','.join('?'for _ in original)+') ORDER BY id',original)}
def proposal(c, inventory, identity):
return {'format':1,'database':identity,'inventory':inventory,'before':inspect(c,inventory)}
def verify(c, plan):
records=plan['before']['records']; ids=tuple(sorted(r['submission_id']for r in records))
if protect(c,ids)!=plan['before']['protected']:
raise ValueError('Protected history/text/tags/identities changed; roll back')
for row in records:
event=c.execute('''SELECT e.id,e.venue_id,e.year,e.track,e.event_key FROM submissions s JOIN editions e ON e.id=s.edition_id WHERE s.id=?''',(row['submission_id'],)).fetchone()
if not event or [event[i]for i in range(1,5)] != [row['venue_id'],row['year'],row['track'],row['event_key']]:
raise ValueError('Target track assignment failed')
if c.execute('SELECT 1 FROM submission_identifiers WHERE submission_id=? AND edition_id<>? LIMIT 1',(row['submission_id'],event[0])).fetchone():
raise ValueError('Target identifier assignment failed')
metadata=json.loads(c.execute('SELECT metadata_json FROM source_records WHERE id=?',(row['source_record_id'],)).fetchone()[0])
if row['track'] != row['from_track']:
if metadata.get(KEY) != [curation(row,event[0],digest(plan))]:
raise ValueError('Reviewed refresh protection missing or changed')
elif KEY in metadata:
raise ValueError('Unexpected scope revision on unchanged track')
original=sorted({r['from_edition_id']for r in records})
if bounded(c,'SELECT * FROM editions WHERE id IN ('+','.join('?'for _ in original)+') ORDER BY id',original)!=plan['before']['editions']:
raise ValueError('Original edition identities changed')
for old in plan['before']['coverage']:
edition,source,url,_,_,_,cursor,success,_=old
expected=Counter()
for row in records:
if row['from_edition_id']==edition:
target=c.execute('SELECT edition_id FROM submissions WHERE id=?',(row['submission_id'],)).fetchone()[0]
expected[target]+=1
for target,number in expected.items():
actual=c.execute('SELECT status,expected_count,imported_count,cursor,last_success_at,last_error FROM edition_sources WHERE edition_id=? AND source_id=? AND list_url=?',(target,source,url)).fetchone()
note='Track scope corrected from reviewed per-record evidence; original whole-volume coverage retained in plan '+digest(plan)
if actual is None or [actual[i]for i in range(6)]!=['partial',number,number,cursor,success,note]:
raise ValueError('Corrected coverage differs from reviewed scope')
return {'records_verified':len(records),'protected':plan['before']['protected']}
def curation(row, target, signature):
return {'external_id':row['external_id'], 'venue_names':sorted(set(row['venue_names'])),
'from':{'edition_id':row['from_edition_id'],'year':row['year'],'track':row['from_track'],'event_key':row['event_key']},
'target':{'edition_id':target,'venue_id':row['venue_id'],'year':row['year'],'track':row['track'],'event_key':row['event_key']},
'section':row['section'],'evidence_url':row['evidence_url'],'evidence_sha256':row['evidence_sha256'],'plan_digest':signature}
def apply_plan(c, plan):
if plan.get('format') != 1:
raise ValueError('Unsupported plan format')
signature=digest(plan);marker=MARKER+signature
if c.execute('SELECT 1 FROM schema_migrations WHERE name=?',(marker,)).fetchone():
return {'status':'already_applied','events_moved':0,**verify(c,plan)}
if inspect(c,plan['inventory']) != plan['before']:
raise ValueError('Stale track plan; create and review a fresh plan')
targets={}; counts=Counter(); moved=0
for row in plan['before']['records']:
key=(row['venue_id'],row['year'],row['track'],row['event_key'])
if key not in targets:
found=c.execute('SELECT id FROM editions WHERE venue_id=? AND year=? AND track=? AND event_key=?',key).fetchone()
targets[key]=found[0]if found else inserted_id(c,'INSERT INTO editions(venue_id,year,track,event_key) VALUES(?,?,?,?)',key)
target=targets[key];counts[(row['from_edition_id'],target)]+=1
if target != row['from_edition_id']:
c.execute('UPDATE submission_identifiers SET edition_id=? WHERE submission_id=?',(target,row['submission_id']))
if c.execute('UPDATE submissions SET edition_id=? WHERE id=? AND edition_id=?',(target,row['submission_id'],row['from_edition_id'])).rowcount!=1:
raise ValueError('Concurrent submission change')
metadata=json.loads(c.execute('SELECT metadata_json FROM source_records WHERE id=?',(row['source_record_id'],)).fetchone()[0]);metadata[KEY]=[curation(row,target,signature)]
c.execute('UPDATE source_records SET metadata_json=? WHERE id=?',(json.dumps(metadata,ensure_ascii=False),row['source_record_id']));moved+=1
# Preserve each original source URL and timestamps, but do not retain its
# old whole-volume count as main-track coverage. Partial is deliberate:
# this operation verifies scope, not abstracts or all possible sources.
for old in plan['before']['coverage']:
edition,source,url,status,expected,imported,cursor,success,error=old
own={r['submission_id'] for r in plan['before']['records']if r['from_edition_id']==edition}
source_name=c.execute('SELECT name FROM sources WHERE id=?',(source,)).fetchone()[0]
if {r['source']for r in plan['before']['records']if r['submission_id']in own}!={source_name}:
raise ValueError('Coverage includes a source outside the reviewed inventory')
for (origin,target),number in counts.items():
if origin!=edition:continue
note='Track scope corrected from reviewed per-record evidence; original whole-volume coverage retained in plan '+signature
c.execute('''INSERT INTO edition_sources(edition_id,source_id,list_url,status,expected_count,imported_count,cursor,last_success_at,last_error)
VALUES(?,?,?,?,?,?,?,?,?) ON CONFLICT(edition_id,source_id,list_url) DO UPDATE SET status=excluded.status,
expected_count=excluded.expected_count,imported_count=excluded.imported_count,last_error=excluded.last_error''',
(target,source,url,'partial',number,number,cursor,success,note))
result=verify(c,plan)
c.execute('INSERT INTO schema_migrations(name) VALUES(?)',(marker,))
return {'status':'applied','events_moved':moved,**result}
def run(db,out,*,pg_service=None,pg_schema=None,inventory=None,plan=None,plan_sha256=None):
out=Path(out)
if out.exists() or not out.parent.is_dir():raise ValueError('New report path in existing directory required')
expected=None
if plan:
raw=Path(plan).read_bytes()
if hashlib.sha256(raw).hexdigest()!=plan_sha256:raise ValueError('Plan hash differs')
expected=json.loads(raw);validate(expected['inventory'])
elif plan_sha256:raise ValueError('Plan path required')
if bool(expected)==bool(inventory):raise ValueError('Choose inventory preflight or apply plan')
if expected is None:
with closing(open_read_connection(db,pg_service=pg_service,pg_schema=pg_schema))as c:
result=proposal(c,validate(json.loads(Path(inventory).read_bytes())),database_identity(c,db))
else:
store=open_store(db,pg_service=pg_service,pg_schema=pg_schema)
with closing(store.conn)as c:
try:
if expected['database']!=database_identity(c,db):raise ValueError('Plan belongs to another database')
if not getattr(c,'postgres',False):c.commit();c.execute('BEGIN IMMEDIATE')
result=apply_plan(c,expected);c.commit()
except BaseException:c.rollback();raise
out.write_text(json.dumps(result,ensure_ascii=False,indent=2)+'\n');return result
def main(argv=None,*,prog=None):
p=argparse.ArgumentParser(prog=prog);database_arguments(p)
p.add_argument('--inventory');p.add_argument('--plan');p.add_argument('--plan-sha256');p.add_argument('--out',required=True)
a=p.parse_args(argv)
if bool(a.plan)!=bool(a.plan_sha256):p.error('--plan and --plan-sha256 must be supplied together')
r=run(a.db,a.out,pg_service=a.pg_service,pg_schema=a.pg_schema,inventory=a.inventory,plan=a.plan,plan_sha256=a.plan_sha256)
print(json.dumps({'status':r.get('status','planned'),'events_moved':r.get('events_moved',0),'out':a.out}),flush=True)
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"""Explicit, plan-bound edition event-key upgrade; never reimport submissions."""
import argparse
from contextlib import closing
import hashlib
import json
from pathlib import Path
import sqlite3
import sys
from paper_atlas.db.backend import database_arguments, open_read_connection, require_sqlite_writable
from paper_atlas.db.events import has_event_key, pinned_www_fall
from paper_atlas.postgres.schema import TABLES, OPTIONAL_TABLES, quote
MARKER = 'edition_event_identity_v1:'
def digest(value):
return hashlib.sha256(json.dumps(value, ensure_ascii=False, sort_keys=True, separators=(',', ':')).encode()).hexdigest()
def values(rows):
return [[r[i] for i in range(len(r))] for r in rows]
def exact_counts(c, *, page_size=5000, progress=None):
"""Count every row in the same snapshot through bounded primary-key pages."""
if not isinstance(page_size, int) or page_size < 1:
raise ValueError('Positive count page size required')
result = {}
if getattr(c, 'postgres', False):
optional = [table for table in OPTIONAL_TABLES if c.execute("SELECT 1 FROM information_schema.tables WHERE table_schema=current_schema() AND table_name=?", (table,)).fetchone()]
else:
optional = [table for table in OPTIONAL_TABLES if c.execute("SELECT 1 FROM sqlite_master WHERE type='table' AND name=?", (table,)).fetchone()]
for table in (*TABLES, *optional):
if table == 'schema_migrations':
continue
if getattr(c, 'postgres', False):
columns = [r[0] for r in c.execute("SELECT a.attname FROM pg_constraint pc JOIN pg_attribute a ON a.attrelid=pc.conrelid AND a.attnum=ANY(pc.conkey) WHERE pc.conrelid=?::regclass AND pc.contype='p' ORDER BY array_position(pc.conkey,a.attnum)", (table,))]
else:
columns = [r[1] for r in sorted(c.execute('PRAGMA table_info('+quote(table)+')'), key=lambda r:r[5]) if r[5]]
if not columns:
raise ValueError('Primary key required for exact count: '+table)
fields = ','.join(quote(column) for column in columns)
last = None; count = 0; pages = 0
if progress:
progress({'table':table, 'rows_counted':0, 'complete':False})
while True:
where = (' WHERE ('+fields+') > ('+','.join('?' for _ in columns)+')') if last is not None else ''
batch = values(c.execute('SELECT '+fields+' FROM '+quote(table)+where+' ORDER BY '+fields+' LIMIT ?', (*last, page_size) if last is not None else (page_size,)).fetchall())
count += len(batch); pages += 1
complete = len(batch) < page_size
if progress and (complete or pages % 20 == 0):
progress({'table':table, 'rows_counted':count, 'complete':complete})
if complete:
break
last = batch[-1]
result[table] = count
return result
def inspect(c, *, progress=None):
enabled = has_event_key(c)
if getattr(c, 'postgres', False):
columns = [r[0] for r in c.execute("SELECT column_name FROM information_schema.columns WHERE table_schema=current_schema() AND table_name='editions' ORDER BY ordinal_position")]
unique = [r[0] for r in c.execute("SELECT pg_get_constraintdef(oid) FROM pg_constraint WHERE conrelid='editions'::regclass AND contype='u'")]
expected_unique = ['UNIQUE (venue_id, year, track, event_key)' if enabled else 'UNIQUE (venue_id, year, track)']
else:
columns = [r[1] for r in c.execute('PRAGMA table_info(editions)')]
indexes = list(c.execute('PRAGMA index_list(editions)'))
unique = [tuple(r[2] for r in c.execute('PRAGMA index_info('+quote(index[1])+')')) for index in indexes if index[2]]
expected_unique = [('venue_id','year','track','event_key') if enabled else ('venue_id','year','track')]
if len(indexes) != 1:
raise ValueError('Unexpected edition indexes; require a reviewed migration')
if columns != ['id','venue_id','year','track'] + (['event_key'] if enabled else []) or unique != expected_unique:
raise ValueError('Unexpected edition schema; require a reviewed migration')
rows = values(c.execute('SELECT id,venue_id,year,track FROM editions ORDER BY id'))
keys = values(c.execute('SELECT id,event_key FROM editions ORDER BY id')) if enabled else [[r[0], ''] for r in rows]
counts = exact_counts(c, progress=progress)
targets = values(c.execute("SELECT e.id FROM editions e JOIN venues v ON v.id=e.venue_id WHERE v.acronym='WWW' AND e.year=1995 AND e.track='main' ORDER BY e.id"))
assignments = []
for (eid,) in targets:
current_key = dict(keys)[eid]
if current_key:
continue
evidence = values(c.execute('''SELECT s.id,src.name,r.id,r.external_id,r.metadata_json FROM submissions s
JOIN submission_sources ss ON ss.submission_id=s.id JOIN source_records r ON r.id=ss.source_record_id
JOIN sources src ON src.id=r.source_id WHERE s.edition_id=? ORDER BY s.id,r.id''', (eid,)))
count = c.execute('SELECT count(*) FROM submissions WHERE edition_id=?', (eid,)).fetchone()[0]
supported = {r[0] for r in evidence if pinned_www_fall(r[1], json.loads(r[4]))}
if not count or len(supported) != count:
raise ValueError('Existing unlabelled WWW1995 edition lacks complete pinned Fall evidence')
assignments.append({'edition_id':eid, 'event_key':'www-1995-fall', 'submissions':count,
'source_evidence_sha256':digest(evidence)})
# Protect all rows in the affected attempt history, including non-DBLP evidence.
target_ids = [r[0] for r in targets]
protected = {}
for table,sql in {
'submissions': 'SELECT s.* FROM submissions s WHERE s.edition_id IN ({}) ORDER BY s.id',
'decisions': 'SELECT d.* FROM decisions d JOIN submissions s ON s.id=d.submission_id WHERE s.edition_id IN ({}) ORDER BY d.id',
'submission_sources': 'SELECT ss.* FROM submission_sources ss JOIN submissions s ON s.id=ss.submission_id WHERE s.edition_id IN ({}) ORDER BY ss.submission_id,ss.source_record_id,ss.source_submission_id',
'decision_sources': 'SELECT ds.* FROM decision_sources ds JOIN decisions d ON d.id=ds.decision_id JOIN submissions s ON s.id=d.submission_id WHERE s.edition_id IN ({}) ORDER BY ds.decision_id,ds.source_record_id,ds.source_decision_id',
'source_records': 'SELECT DISTINCT r.* FROM source_records r JOIN submission_sources ss ON ss.source_record_id=r.id JOIN submissions s ON s.id=ss.submission_id WHERE s.edition_id IN ({}) ORDER BY r.id',
}.items():
records = values(c.execute(sql.format(','.join('?' for _ in target_ids)), target_ids)) if target_ids else []
protected[table] = {'count':len(records), 'sha256':digest(records)}
return {'event_column':enabled, 'editions_sha256':digest(rows), 'edition_ids':[r[0] for r in rows],
'event_keys':keys, 'counts':counts, 'assignments':assignments, 'protected':protected}
def database_identity(c, db=None):
if getattr(c, 'postgres', False):
r = c.execute('SELECT current_database(),current_schema()').fetchone()
return {'engine':'postgres', 'database':r[0], 'schema':r[1]}
return {'engine':'sqlite', 'path':str(Path(db).resolve())}
def plan(db=None, *, pg_service=None, pg_schema=None, progress=None):
with closing(open_read_connection(db, pg_service=pg_service, pg_schema=pg_schema)) as c:
return {'format':1, 'database':database_identity(c, db), 'before':inspect(c, progress=progress)}
def apply_plan(c, proposal, *, progress=None):
before = proposal['before']
if proposal.get('format') != 1:
raise ValueError('Unsupported event identity plan')
if getattr(c, 'postgres', False):
c.execute('LOCK TABLE editions IN ACCESS EXCLUSIVE MODE')
current = inspect(c, progress=progress)
signature = digest(proposal)
marker = MARKER + signature
if c.execute('SELECT 1 FROM schema_migrations WHERE name=?', (marker,)).fetchone():
expected_keys = dict(before['event_keys'])
expected_keys.update({a['edition_id']:a['event_key'] for a in before['assignments']})
if (not current['event_column'] or current['editions_sha256'] != before['editions_sha256']
or current['protected'] != before['protected'] or current['counts'] != before['counts']
or dict(current['event_keys']) != expected_keys):
raise ValueError('Applied plan no longer matches current data; generate a new plan')
return {'status':'already_applied', 'updated_editions':0, 'after':current}
if current != before:
raise ValueError('Event identity plan is stale; generate a new plan')
if not current['event_column']:
if getattr(c, 'postgres', False):
constraints = c.execute("SELECT conname,pg_get_constraintdef(oid) FROM pg_constraint WHERE conrelid='editions'::regclass AND contype='u'").fetchall()
matches = [name for name,definition in constraints if definition == 'UNIQUE (venue_id, year, track)']
if len(matches) != 1 or len(constraints) != 1:
raise ValueError('Unexpected legacy edition uniqueness')
c.execute("ALTER TABLE editions ADD COLUMN event_key TEXT COLLATE \"C\" NOT NULL DEFAULT ''")
c.execute('ALTER TABLE editions DROP CONSTRAINT '+quote(matches[0]))
c.execute('ALTER TABLE editions ADD CONSTRAINT editions_event_identity_unique UNIQUE(venue_id,year,track,event_key)')
else:
unique = [tuple(r[2] for r in c.execute('PRAGMA index_info('+quote(index[1])+')'))
for index in c.execute('PRAGMA index_list(editions)') if index[2]]
if unique != [('venue_id','year','track')]:
raise ValueError('Unexpected legacy edition uniqueness')
c.execute("CREATE TABLE editions_event_upgrade(id INTEGER PRIMARY KEY,venue_id INTEGER NOT NULL REFERENCES venues(id),year INTEGER NOT NULL,track TEXT NOT NULL DEFAULT 'main',event_key TEXT NOT NULL DEFAULT '',UNIQUE(venue_id,year,track,event_key))")
c.execute('INSERT INTO editions_event_upgrade(id,venue_id,year,track) SELECT id,venue_id,year,track FROM editions')
c.execute('DROP TABLE editions')
c.execute('ALTER TABLE editions_event_upgrade RENAME TO editions')
for item in before['assignments']:
result = c.execute("UPDATE editions SET event_key=? WHERE id=? AND event_key=''", (item['event_key'],item['edition_id']))
if result.rowcount != 1:
raise ValueError('Edition assignment changed during upgrade')
c.execute('INSERT INTO schema_migrations(name) VALUES(?)', (marker,))
after = inspect(c, progress=progress)
expected_keys = dict(before['event_keys'])
expected_keys.update({a['edition_id']:a['event_key'] for a in before['assignments']})
if (after['editions_sha256'] != before['editions_sha256'] or after['protected'] != before['protected']
or after['counts'] != before['counts'] or dict(after['event_keys']) != expected_keys):
raise ValueError('Event upgrade changed protected data')
if not getattr(c, 'postgres', False) and c.execute('PRAGMA foreign_key_check').fetchall():
raise ValueError('Foreign key violation after event upgrade')
return {'status':'applied', 'updated_editions':len(before['assignments']), 'after':after}
def upgrade(proposal, db=None, *, pg_service=None, pg_schema=None, progress=None):
if pg_service:
from paper_atlas.postgres.writer import WriteConnection
with closing(WriteConnection(pg_service, pg_schema)) as c:
if proposal['database'] != database_identity(c):
raise ValueError('Plan targets a different database')
try:
result = apply_plan(c, proposal, progress=progress); c.commit(); return result
except BaseException:
c.rollback(); raise
require_sqlite_writable(db)
if not Path(db).is_file():
raise ValueError('Existing SQLite sample required')
with closing(sqlite3.connect(db, timeout=30)) as c:
if proposal['database'] != database_identity(c, db):
raise ValueError('Plan targets a different database')
c.execute('PRAGMA foreign_keys=OFF') # Outside the transaction; no cascading deletes.
try:
c.execute('BEGIN IMMEDIATE')
result = apply_plan(c, proposal, progress=progress); c.commit(); return result
except BaseException:
c.rollback(); raise
finally:
c.execute('PRAGMA foreign_keys=ON')
def main(argv=None, *, prog=None):
p = argparse.ArgumentParser(prog=prog); database_arguments(p)
p.add_argument('--out', required=True)
p.add_argument('--apply-plan'); p.add_argument('--plan-sha256')
args = p.parse_args(argv)
if bool(args.apply_plan) != bool(args.plan_sha256):
p.error('--apply-plan and --plan-sha256 must be supplied together')
target = Path(args.out)
if target.exists():
raise ValueError('Refusing to overwrite an existing plan/report')
progress = lambda event: print(json.dumps({'phase':'exact_row_count', **event}), file=sys.stderr, flush=True)
if args.apply_plan:
raw = Path(args.apply_plan).read_bytes()
if hashlib.sha256(raw).hexdigest() != args.plan_sha256:
raise ValueError('Plan file SHA256 differs from approved bytes')
result = upgrade(json.loads(raw), args.db, pg_service=args.pg_service, pg_schema=args.pg_schema, progress=progress)
else:
result = plan(args.db, pg_service=args.pg_service, pg_schema=args.pg_schema, progress=progress)
target.write_text(json.dumps(result, ensure_ascii=False, indent=2)+'\n')
print(json.dumps({'out':str(target), 'sha256':hashlib.sha256(target.read_bytes()).hexdigest(),
'status':result.get('status','planned')}), flush=True)
+204
View File
@@ -0,0 +1,204 @@
"""Evidence-bound repair of two existing IJCAI/ECAI edition memberships."""
import argparse
from contextlib import closing
import hashlib
import json
from pathlib import Path
from paper_atlas.db.backend import database_arguments, open_read_connection, open_store
from paper_atlas.db.submissions import timestamp
from paper_atlas.collectors.dblp import XML_SHA
YEARS = (2018, 2022)
TARGET = 'ECAI+IJCAI'
MEMBERS = {'ECAI', 'IJCAI'}
EVIDENCE = 'https://www.eurai.org/ecai/history'
MARKER = 'joint_ijcai_ecai_2018_2022_v1'
def _digest(c, sql, params=()):
sha = hashlib.sha256(); count = 0
for row in c.execute(sql, params):
sha.update((json.dumps([row[i] for i in range(len(row))], ensure_ascii=False,
separators=(',', ':')) + '\n').encode())
count += 1
if count > 100000:
raise ValueError('Joint repair evidence scope exceeded bounded row limit')
return {'rows': count, 'sha256': sha.hexdigest()}
def fingerprints(c, ids):
marks = ','.join('?' for _ in ids)
submissions = 'SELECT id FROM submissions WHERE edition_id IN (' + marks + ')'
papers = 'SELECT paper_id FROM submissions WHERE edition_id IN (' + marks + ')'
decisions = 'SELECT id FROM decisions WHERE submission_id IN (' + submissions + ')'
checks = {
'papers': ('id IN (' + papers + ')', 'id'),
'identifiers': ('paper_id IN (' + papers + ')', 'scheme,value'),
'source_records': ('paper_id IN (' + papers + ')', 'id'),
'paper_tags': ('paper_id IN (' + papers + ')', 'paper_id,tag_id,evidence_key'),
'submissions': ('edition_id IN (' + marks + ')', 'id'),
'decisions': ('submission_id IN (' + submissions + ')', 'id'),
'submission_sources': ('submission_id IN (' + submissions + ')', 'submission_id,source_record_id,source_submission_id'),
'submission_identifiers': ('edition_id IN (' + marks + ')', 'edition_id,scheme,value'),
'decision_sources': ('decision_id IN (' + decisions + ')', 'decision_id,source_record_id,source_decision_id'),
'edition_sources': ('edition_id IN (' + marks + ')', 'edition_id,source_id,list_url'),
}
return {table: _digest(c, 'SELECT * FROM ' + table + ' WHERE ' + where + ' ORDER BY ' + order, ids)
for table, (where, order) in checks.items()}
def inspect(c):
target = c.execute('SELECT id FROM venues WHERE acronym=?', (TARGET,)).fetchall()
if len(target) != 1:
raise ValueError('Exactly one existing canonical joint venue required')
target = target[0][0]
aliases = {r[0] for r in c.execute('SELECT alias FROM venue_aliases WHERE venue_id=?', (target,))}
if aliases != MEMBERS:
raise ValueError('Joint target must already have exactly ECAI and IJCAI aliases')
editions = []
for year in YEARS:
rows = c.execute('''SELECT e.id,e.venue_id,v.acronym FROM editions e JOIN venues v ON v.id=e.venue_id
WHERE v.acronym IN ('IJCAI','ECAI+IJCAI') AND e.year=? AND e.track='main' ''', (year,)).fetchall()
if len(rows) != 1:
raise ValueError('Expected one existing edition per year; missing or colliding editions require separate review')
edition, venue, acronym = (rows[0][i] for i in range(3))
count = c.execute('SELECT count(*) FROM submissions WHERE edition_id=?', (edition,)).fetchone()[0]
if not 0 < count <= 5000:
raise ValueError('Existing edition must have a nonempty bounded submission scope')
# Every existing submission must be supported by its own pinned DBLP
# volume record. No title/author matching, new attempts or text writes.
evidence = c.execute('''SELECT s.id,r.external_id,r.metadata_json FROM submissions s
JOIN submission_sources ss ON ss.submission_id=s.id
JOIN source_records r ON r.id=ss.source_record_id JOIN sources src ON src.id=r.source_id
WHERE s.edition_id=? AND src.name='dblp' ORDER BY s.id,r.id''', (edition,)).fetchall()
seen = set()
for row in evidence:
sid, external, metadata = (row[i] for i in range(3))
meta = json.loads(metadata)
bibliography = meta.get('bibliography') or {}
if (meta.get('snapshot_sha256') != XML_SHA
or meta.get('proceedings_key') != 'conf/ijcai/' + str(year)
or meta.get('bibliographic_year') != year
or bibliography.get('booktitle') not in (['IJCAI'], ['IJCAI/ECAI'])
or not external.startswith('conf/ijcai/')):
raise ValueError('Source evidence outside the exact verified IJCAI/ECAI volume')
seen.add(sid)
if len(seen) != count:
raise ValueError('Every submission must have matching original volume evidence')
editions.append({'id': edition, 'year': year, 'track': 'main', 'from_venue_id': venue,
'from_venue': acronym, 'target_venue_id': target, 'submissions': count,
'evidence_url': EVIDENCE, 'proceedings_key': 'conf/ijcai/' + str(year)})
ids = tuple(e['id'] for e in editions)
return {'format_version': 1, 'kind': MARKER, 'checked_at': timestamp(), 'editions': editions,
'content_fingerprints': fingerprints(c, ids), 'target_aliases': sorted(aliases),
'status': 'already_joint' if all(e['from_venue_id'] == target for e in editions) else 'ready',
'scope': 'Only these two existing edition venue references; no source text, paper, submission, decision, track, identifier or tag change.'}
def validate_plan(expected):
if not isinstance(expected, dict):
raise ValueError('Repair plan must be a JSON object')
if set(expected) != {'format_version','kind','checked_at','editions','content_fingerprints','target_aliases','status','scope','database'}:
raise ValueError('Unexpected repair plan fields')
if (type(expected['format_version']) is not int or expected['format_version'] != 1
or expected['kind'] != MARKER or expected['status'] not in ('ready','already_joint')):
raise ValueError('Unsupported repair plan')
if (not isinstance(expected['database'],dict) or not isinstance(expected['content_fingerprints'],dict)
or not isinstance(expected['editions'],list) or len(expected['editions']) != 2
or expected['target_aliases'] != sorted(MEMBERS)):
raise ValueError('Invalid repair plan structure')
for edition, year in zip(expected['editions'], YEARS):
if not isinstance(edition,dict) or edition.get('year') != year:
raise ValueError('Repair plan must name the two exact ordered years')
for key in ('id','year','from_venue_id','target_venue_id','submissions'):
if type(edition.get(key)) is not int or edition[key] <= 0:
raise ValueError('Repair plan IDs/counts must be positive integers')
def apply_plan(c, expected):
validate_plan(expected)
actual = inspect(c)
if actual['content_fingerprints'] != expected['content_fingerprints'] or actual['target_aliases'] != expected['target_aliases']:
raise ValueError('Stale repair plan: protected content or aliases changed')
if len(expected['editions']) != 2:
raise ValueError('Exactly two editions required')
for old, now in zip(expected['editions'], actual['editions']):
if set(old) != set(now):
raise ValueError('Unexpected edition fields')
for key in ('id','year','track','target_venue_id','submissions','evidence_url','proceedings_key'):
if old[key] != now[key]:
raise ValueError('Stale repair plan: edition differs')
if now['from_venue_id'] != old['from_venue_id'] and now['from_venue_id'] != now['target_venue_id']:
raise ValueError('Edition membership differs from plan')
if actual['status'] == 'already_joint':
return {**actual, 'status':'already_joint', 'updated_editions':0}
for edition in actual['editions']:
if edition['from_venue_id'] == edition['target_venue_id']:
continue
changed = c.execute('''UPDATE editions SET venue_id=? WHERE id=? AND venue_id=? AND year=? AND track=?''',
(edition['target_venue_id'],edition['id'],edition['from_venue_id'],edition['year'],edition['track']))
if changed.rowcount != 1:
raise ValueError('Concurrent edition change; entire repair must roll back')
after = inspect(c)
if after['status'] != 'already_joint' or after['content_fingerprints'] != actual['content_fingerprints']:
raise ValueError('Postcheck changed protected content; entire repair must roll back')
c.execute('INSERT INTO schema_migrations(name) VALUES(?) ON CONFLICT DO NOTHING', (MARKER,))
return {**after, 'status':'applied', 'updated_editions':sum(e['from_venue_id'] != e['target_venue_id'] for e in actual['editions'])}
def database_identity(c, db):
if getattr(c, 'postgres', False):
row = c.execute('SELECT current_database(),current_schema()').fetchone()
return {'engine':'postgresql','database':row[0],'schema':row[1]}
return {'engine':'sqlite','path':str(Path(db).resolve())}
def run(db, out, *, pg_service=None, pg_schema=None, plan=None, plan_sha256=None):
out = Path(out).resolve()
if not out.parent.is_dir():
raise ValueError('Report parent directory must already exist')
if out.exists():
raise ValueError('Preserve existing evidence report; choose a new output path')
expected = None
if plan:
raw = Path(plan).read_bytes()
if hashlib.sha256(raw).hexdigest() != plan_sha256:
raise ValueError('Repair plan hash differs before opening database')
expected = json.loads(raw)
validate_plan(expected)
elif plan_sha256:
raise ValueError('Plan hash requires an existing plan')
if db and out == Path(db).resolve():
raise ValueError('Report must not overwrite database')
writer = open_store(db, pg_service=pg_service, pg_schema=pg_schema) if expected is not None else None
c = writer.conn if writer else open_read_connection(db, pg_service=pg_service, pg_schema=pg_schema)
with closing(c):
try:
if expected is not None and not getattr(c, 'postgres', False):
c.commit(); c.execute('BEGIN IMMEDIATE')
identity = database_identity(c, db)
if expected is not None and expected['database'] != identity:
raise ValueError('Plan belongs to another database/schema')
report = apply_plan(c, expected) if expected is not None else inspect(c)
report['database'] = identity
if expected is not None:
report['plan_sha256'] = plan_sha256
if expected is not None:
c.commit()
except BaseException:
if expected is not None: c.rollback()
raise
out.write_text(json.dumps(report,ensure_ascii=False,indent=2)+'\n')
print(json.dumps({'status':report['status'],'editions':len(report['editions']),
'updated_editions':report.get('updated_editions',0),'report':str(out)}))
return report
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog); database_arguments(parser)
parser.add_argument('--out', required=True)
parser.add_argument('--plan', help='Apply an already reviewed plan; omitted means read-only preflight')
parser.add_argument('--plan-sha256', help='Required exact plan SHA256 when applying')
args = parser.parse_args(argv)
run(args.db,args.out,pg_service=args.pg_service,pg_schema=args.pg_schema,plan=args.plan,plan_sha256=args.plan_sha256)
+27 -5
View File
@@ -42,9 +42,23 @@ def source_record_count(c, source, edition):
def require_incremental_parent(c, source, manifest, options):
edition = c.execute('''SELECT e.id FROM editions e JOIN venues v ON v.id=e.venue_id
WHERE lower(v.acronym)=lower(?) AND e.year=? AND e.track=?''',
(manifest['venue'], manifest['year'], manifest['track'])).fetchone()
from paper_atlas.db.events import has_event_key, validate_event_key
key = validate_event_key(manifest.get('event_key'))
enabled = has_event_key(c)
if key and not enabled:
raise ValueError('Event identity migration required for incremental coverage')
field = 'e.event_key' if enabled else "''"
rows = c.execute('SELECT e.id,'+field+""" FROM editions e JOIN venues v ON v.id=e.venue_id
WHERE lower(v.acronym)=lower(?) AND e.year=? AND e.track=?""",
(manifest['venue'], manifest['year'], manifest['track'])).fetchall()
if key is None:
if len(rows) > 1 or any(r[1] for r in rows) or (manifest['venue'] == 'WWW' and manifest['year'] in (1994,1995)):
raise ValueError('Explicit manifest event_key required for incremental coverage')
else:
rows = [r for r in rows if r[1] == key]
if len(rows) > 1:
raise ValueError('Ambiguous incremental coverage event')
edition = rows[0] if rows else None
entries = c.execute('''SELECT list_url,status,expected_count,imported_count
FROM edition_sources WHERE edition_id=? AND source_id=?''',
(edition[0], source)).fetchall() if edition else []
@@ -94,9 +108,11 @@ def ingest_file(db,path, *, pg_service=None, pg_schema=None):
row = json.loads(line)
if row['source'] != source_name:
raise ValueError('Source differs from manifest')
if any(key in manifest and manifest[key]!=row[key] for key in ('venue','year','track')):
if any(key in manifest and manifest[key]!=row.get(key) for key in ('venue','year','track','event_key')):
raise ValueError('Conference edition differs from manifest')
require_track_record(row, manifest)
from paper_atlas.db.events import validate_event_key
validate_event_key(row.get('event_key'))
external = row['external_id']
if external in seen:
raise ValueError('Duplicate external ID in one collected file: '+external)
@@ -117,7 +133,13 @@ def ingest_file(db,path, *, pg_service=None, pg_schema=None):
status=event['status']
if events and status is None:raise ValueError('Explicit decision event requires a status')
if status is not None and status not in ('accepted','rejected','desk_rejected','withdrawn','under_review','unknown'):raise ValueError('Unsupported decision event')
edition=store.decision(paper,record,row['venue'],row['year'],row['track'],external,event.get('evidence_url',row['url']),status,event.get('raw_value',''),row.get('venue_aliases'),identities=identities,observed_at=event.get('observed_at') or row_observed,decision_date=event.get('decision_date'),source_decision_id=event.get('source_decision_id',''),submitted_at=row.get('submitted_at'),guard_status=source_name in (PUBLIC_SOURCE,ARCHIVE_SOURCE))
edition=store.decision(paper,record,row['venue'],row['year'],row['track'],external,event.get('evidence_url',row['url']),status,event.get('raw_value',''),row.get('venue_aliases'),identities=identities,observed_at=event.get('observed_at') or row_observed,decision_date=event.get('decision_date'),source_decision_id=event.get('source_decision_id',''),submitted_at=row.get('submitted_at'),guard_status=source_name in (PUBLIC_SOURCE,ARCHIVE_SOURCE),event_key=row.get('event_key'))
from paper_atlas.db.edition_scopes import KEY
scope_metadata=json.loads(c.execute('SELECT metadata_json FROM source_records WHERE id=?',(record,)).fetchone()[0])
if scope_metadata.get(KEY):
actual_track=c.execute('SELECT track FROM editions WHERE id=?',(edition,)).fetchone()[0]
if row['track']!=actual_track:
raise ValueError('Recollect this whole-volume source with reviewed per-record tracks before refresh')
editions.add(edition)
else:
raise ValueError('This importer requires an explicit supported decision status')
+2 -2
View File
@@ -143,7 +143,7 @@ def migrate(db, service, out, *, schema='research', storage_path=None, min_free_
free_space(storage_path, min_free_gib)
control = schema + '_migration'
report = {'status': 'preflight', 'source': str(db), 'service': service, 'schema': schema,
'started_at': timestamp(), 'tables': {}, 'scope': 'All 21 business tables; FTS5 internals rebuilt as native PostgreSQL GIN.'}
'started_at': timestamp(), 'tables': {}, 'scope': 'All baseline business tables and recognized installed extensions; FTS5 rebuilt as native PostgreSQL GIN.'}
with Path(str(db) + '.maintenance.lock').open('a') as lock:
fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB)
if Path(str(db) + '-wal').exists() and Path(str(db) + '-wal').stat().st_size:
@@ -240,7 +240,7 @@ def migrate(db, service, out, *, schema='research', storage_path=None, min_free_
JOIN pg_am am ON am.oid=ix.relam WHERE ns.nspname=%s AND ix.relname='papers_search_gin' ''', (stage,)).fetchone()
if search != ('gin', True, True, 'papers'):
raise ValueError('Native full-text index is not valid and ready')
for table in TABLES:
for table in plan:
pg.execute('ANALYZE ' + qualify(stage, table))
invalid = pg.execute('''SELECT count(*) FROM pg_constraint co JOIN pg_class cl ON cl.oid=co.conrelid
JOIN pg_namespace ns ON ns.oid=cl.relnamespace WHERE ns.nspname=%s AND NOT co.convalidated''', (stage,)).fetchone()[0]
+4 -2
View File
@@ -8,7 +8,9 @@ TABLES = ('sources', 'papers', 'identifiers', 'source_records', 'venues', 'editi
'submission_sources', 'submission_identifiers', 'decision_sources',
'submission_merges', 'decision_merges', 'schema_migrations', 'tags',
'paper_tags', 'match_candidates', 'paper_merges', 'ingest_runs')
OPTIONAL_TABLES = ('annotation_events',)
CHECKS = {
'annotation_events': ["kind IN ('tag','research_type')", 'retracts_id IS NULL OR retracts_id<>id'],
'venues': ["venue_type IN ('conference','journal','review_platform')"],
'edition_sources': ["status IN ('pending','running','complete','partial','blocked','unavailable','not_yet_published')"],
'decisions': ["status IN ('accepted','rejected','desk_rejected','withdrawn','under_review','unknown')"],
@@ -50,10 +52,10 @@ def quote(name):
def inspect(connection):
business = {name for schema, name, kind, *_ in connection.execute('PRAGMA table_list')
if schema == 'main' and kind == 'table' and not name.startswith('sqlite_')}
if business != set(TABLES):
if not set(TABLES) <= business or business - set(TABLES) - set(OPTIONAL_TABLES):
raise ValueError('Unexpected business tables: ' + repr(sorted(business ^ set(TABLES))))
result = {}
for table in TABLES:
for table in (*TABLES, *(name for name in OPTIONAL_TABLES if name in business)):
columns = [{'name': r[1], 'type': r[2].upper(), 'notnull': bool(r[3]),
'default': r[4], 'pk': r[5]}
for r in connection.execute('PRAGMA table_info(' + quote(table) + ')')]
+2
View File
@@ -85,3 +85,5 @@ class WriteConnection:
class PostgresStore(Store):
def __init__(self, service, schema=None):
self.conn = WriteConnection(service, schema)
from paper_atlas.db.events import has_event_key
self.event_identity = has_event_key(self.conn)
+38 -4
View File
@@ -14,7 +14,9 @@ ACCEPTED_PAPERS = "SELECT s.paper_id FROM submissions s JOIN decisions d ON d.su
def known_acceptances(conn,paper):
return [dict(row) for row in conn.execute('''SELECT s.id AS submission_id,v.acronym AS venue,e.year,e.track,
from paper_atlas.db.events import has_event_key
event = 'e.event_key' if has_event_key(conn) else "''"
return [dict(row) for row in conn.execute('''SELECT s.id AS submission_id,v.acronym AS venue,e.year,e.track,'''+event+''' AS event_key,
d.id AS decision_id,d.decision_date,d.observed_at,d.evidence_url
FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id
JOIN decisions d ON d.submission_id=s.id WHERE s.paper_id=? AND d.status='accepted' AND '''+LATEST_DECISION+
@@ -29,10 +31,13 @@ def main(argv=None, *, prog=None):
parser.add_argument('--pg-schema', help='Optional PostgreSQL schema override; otherwise use the configured search_path')
parser.add_argument('--query', help='Title/abstract search: FTS5 for SQLite, web-search syntax for PostgreSQL')
parser.add_argument('--paper',type=int,help='Paper ID; include sources, tags and submission history')
parser.add_argument('--research-type', help='Independent type filter as namespace=value; no type inferred from track')
parser.add_argument('--annotation-history', action='store_true', help='Include retraction evidence for --paper')
parser.add_argument('--tag', help='Filter as namespace=value, e.g. arxiv:category=cs.AI')
parser.add_argument('--venue', help='Conference acronym')
parser.add_argument('--year', type=int)
parser.add_argument('--track',help='Exact track, e.g. main, findings, workshop')
parser.add_argument('--event-key',help='Exact event within a venue/year/track')
parser.add_argument('--status', choices=['accepted','rejected','desk_rejected','withdrawn','under_review','unknown'])
parser.add_argument('--outcome',choices=['accepted','no_known_acceptance'],help='跨会议的已知录用情况;未查到录用不等于从未录用')
parser.add_argument('--limit', type=int, default=20)
@@ -47,6 +52,13 @@ def main(argv=None, *, prog=None):
conn = sqlite3.connect(Path(args.db).resolve().as_uri()+'?mode=ro', uri=True)
conn.row_factory = sqlite3.Row
conn.execute('BEGIN') # One consistent read snapshot while ingestion continues.
from paper_atlas.db.events import has_event_key
event = 'e.event_key' if has_event_key(conn) else "''"
if args.event_key is not None and event == "''":
conn.close()
raise ValueError('Event identity migration required for event-key queries')
from paper_atlas.curation.annotations import available, observations, ACTIVE
has_annotations = available(conn)
if args.stats:
result = {name:conn.execute('SELECT count(*) FROM '+name).fetchone()[0] for name in ('papers','source_records','submissions','decisions','tags','match_candidates')}
result['records_by_source'] = [dict(r) for r in conn.execute('SELECT s.name,count(r.id) AS imported_records FROM sources s LEFT JOIN source_records r ON r.source_id=s.id GROUP BY s.id ORDER BY s.name')]
@@ -69,17 +81,35 @@ def main(argv=None, *, prog=None):
where.append('p.id IN (SELECT rowid FROM papers_fts WHERE papers_fts MATCH ?)')
params.append(args.query)
if args.tag:
if '=' not in args.tag:
parser.error('--tag requires namespace=value')
namespace,value = args.tag.split('=',1)
where.append('EXISTS(SELECT 1 FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE pt.paper_id=p.id AND t.namespace=? AND t.value=?)'); params.extend([namespace,value])
platform = 'EXISTS(SELECT 1 FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE pt.paper_id=p.id AND t.namespace=? AND t.value=?)'
params.extend([namespace,value])
if has_annotations:
platform = '(' + platform + ' OR EXISTS(SELECT 1 FROM annotation_events a WHERE a.paper_id=p.id AND a.kind=\'tag\' AND a.namespace=? AND a.value=? AND ' + ACTIVE + '))'
params.extend([namespace,value])
where.append(platform)
if args.research_type:
if '=' not in args.research_type:
parser.error('--research-type requires namespace=value')
namespace,value = args.research_type.split('=',1)
if has_annotations:
where.append('EXISTS(SELECT 1 FROM annotation_events a WHERE a.paper_id=p.id AND a.kind=\'research_type\' AND a.namespace=? AND a.value=? AND ' + ACTIVE + ')')
params.extend([namespace,value])
else:
where.append('1=0')
if args.outcome:
where.append('p.id '+('IN' if args.outcome=='accepted' else 'NOT IN')+' ('+ACCEPTED_PAPERS+')')
if args.venue or args.year or args.status or args.track:
if args.venue or args.year or args.status or args.track or args.event_key is not None:
clause = ['1=1']
if args.venue:
if conn.execute("SELECT 1 FROM sqlite_master WHERE type='table' AND name='venue_aliases'").fetchone():
clause.append('(lower(v.acronym)=lower(?) OR EXISTS(SELECT 1 FROM venue_aliases va WHERE va.venue_id=v.id AND lower(va.alias)=lower(?)))'); params.extend([args.venue,args.venue])
else:
clause.append('lower(v.acronym)=lower(?)');params.append(args.venue)
if args.event_key is not None:
clause.append('e.event_key=?');params.append(args.event_key)
if args.track:
clause.append('e.track=?');params.append(args.track)
if args.year:
@@ -98,10 +128,14 @@ def main(argv=None, *, prog=None):
paper['known_acceptances']=known_acceptances(conn,row['id'])
paper['publication_outcome']='accepted' if paper['known_acceptances'] else 'no_known_acceptance'
if args.paper is not None:
paper['research_types'] = observations(conn, row['id'], kind='research_type')
paper['annotation_tags'] = observations(conn, row['id'], kind='tag')
if args.annotation_history:
paper['annotation_history'] = observations(conn, row['id'], history=True)
paper['tags'] = [dict(r) for r in conn.execute('SELECT t.namespace,t.value,pt.evidence_key FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE pt.paper_id=?',(row['id'],))]
paper['sources'] = [dict(r) for r in conn.execute('SELECT s.name,r.external_id,r.url,r.title,r.abstract,r.retrieved_at FROM source_records r JOIN sources s ON s.id=r.source_id WHERE r.paper_id=?',(row['id'],))]
submissions = []
for sub in conn.execute('SELECT s.id,s.source_submission_id,s.submitted_at,v.acronym,e.year,e.track FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id WHERE s.paper_id=? ORDER BY e.year,s.id',(row['id'],)):
for sub in conn.execute('SELECT s.id,s.source_submission_id,s.submitted_at,v.acronym,e.year,e.track,'+event+' AS event_key FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id WHERE s.paper_id=? ORDER BY e.year,s.id',(row['id'],)):
submission = dict(sub)
submission['decisions'] = []
for d in conn.execute('SELECT id,status,raw_value,evidence_url,observed_at,decision_date FROM decisions WHERE submission_id=? ORDER BY observed_at,COALESCE(decision_date,observed_at),id',(sub['id'],)):
+1 -1
View File
@@ -21,5 +21,5 @@ include = ["paper_atlas*"]
exclude = ["tests*"]
[tool.setuptools.package-data]
"paper_atlas.db" = ["schema.sql"]
"paper_atlas.db" = ["schema.sql", "annotations.sql"]
"paper_atlas.resources" = ["venues.json"]
+151
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@@ -0,0 +1,151 @@
"""Publisher evidence, section boundaries and native-ingestion regression checks."""
import hashlib
import json
import re
from pathlib import Path
import sqlite3
import tempfile
import unittest
from unittest.mock import patch
from paper_atlas.collectors import aamas
from paper_atlas.ingestion.records import ingest_file
def paper(pid, abstract=True):
summary = '<span class="abstract">Research with <i>evidence</i>.<br>More detail.</span>' if abstract else ''
return f'''<div class="paper" id="{pid}"><span class="id">{pid}</span>
<p class="paper"><span class="title"><a href="../papers/{pid}.pdf">{summary}
A structured &amp; auditable paper {pid}</a></span><span class="authors">
<a href="authors.html#Jane">Jane Doe<span class="amount">has 7 papers</span></a>, Bob Smith
</span></p></div>'''
def page(section, pid, abstract=True):
heading = aamas.SECTIONS[section][0]
return (f'<html><head><title>{heading} - AAMAS 2012</title></head><body>'
f'<h1>{heading}</h1><h2 class="section" id="s-1A">Session 1A – Robotics I</h2>'
+paper(pid, abstract)+'</body></html>')
class AamasProceedingsTests(unittest.TestCase):
def snapshots(self, root):
root.mkdir()
receipts = []
items = {'introduction': ('<title>AAMAS 2012</title><p>Aggregate withdrawals do not identify papers.</p>', aamas.ROOT)}
for index, section in enumerate(aamas.SECTIONS):
items[section] = (page(section, f'P{index}_1', section != 'extabstracts'), aamas.ROOT+'resources/'+section+'.html')
for key, (html, url) in items.items():
data = html.encode()
(root/(key+'.html')).write_bytes(data)
receipts.append({'url': url, 'status': 200, 'file': key+'.html', 'bytes': len(data),
'sha256': hashlib.sha256(data).hexdigest(), 'finished_at': '2026-11-09T00:00:00+00:00'})
(root/'receipts.json').write_text(json.dumps({'receipts': receipts}))
return root
def test_hidden_abstract_and_author_badges_are_not_title_or_authors(self):
rows = aamas.parse_section(page('fullpapers', '1A_1'), 'fullpapers', '2026-11-09T00:00:00Z', {'sha256': 'proof'})
row, = rows
self.assertEqual(row['title'], 'A structured & auditable paper 1A_1')
self.assertEqual(row['abstract'], 'Research with evidence. More detail.')
self.assertEqual(row['authors'], ['Jane Doe', 'Bob Smith'])
self.assertEqual(row['metadata']['authors_display'], 'Jane Doe, Bob Smith')
self.assertEqual(row['url'], aamas.ROOT+'resources/fullpapers.html#1A_1')
self.assertEqual(row['metadata']['paper_url'], aamas.ROOT+'papers/1A_1.pdf')
self.assertEqual(row['metadata']['source_evidence'], {'sha256': 'proof'})
def test_publication_formats_and_session_topics_do_not_invent_submission_tracks(self):
for section, (_, fmt, track, _) in aamas.SECTIONS.items():
row, = aamas.parse_section(page(section, 'P_1', False), section, '2026-11-09T00:00:00Z', {})
self.assertEqual((row['track'], row['metadata']['publication_format']), (track, fmt))
self.assertIsNone(row['abstract'])
self.assertEqual(row['status'], 'accepted')
self.assertEqual(row['metadata']['decision_date_precision'], 'not_supplied')
self.assertEqual(row['metadata']['session']['title'], 'Session 1A – Robotics I')
self.assertIn({'namespace': 'aamas_proceedings:publication_format', 'value': fmt}, row['tags'])
self.assertEqual(aamas.SECTIONS['fullpapers'][2], 'proceedings_unspecified')
self.assertEqual(aamas.SECTIONS['extabstracts'][2], 'proceedings_unspecified')
def test_changed_edition_section_duplicate_id_or_pdf_link_is_rejected(self):
html = page('fullpapers', '1A_1')
for changed in [html.replace('AAMAS 2012', 'AAMAS 2025'),
html.replace('<h1>Full Papers</h1>', '<h1>Rejected Papers</h1>'),
html.replace('</body>', paper('1A_1')+'</body>'),
html.replace('../papers/1A_1.pdf', 'https://example.org/1A_1.pdf'),
html.replace('../papers/1A_1.pdf', '../papers/1A_2.pdf')]:
with self.subTest(changed=changed):
with self.assertRaises(ValueError):
aamas.parse_section(changed, 'fullpapers', '2026-11-09T00:00:00Z', {})
def test_frozen_responses_require_checksums_success_and_safe_paths(self):
for failure in ['checksum', 'status', 'path']:
with self.subTest(failure=failure), tempfile.TemporaryDirectory() as temporary:
root = self.snapshots(Path(temporary)/'source')
path = root/'receipts.json'
receipts = json.loads(path.read_text())
item = receipts['receipts'][0]
if failure == 'checksum': item['sha256'] = '0'*64
elif failure == 'status': item['status'] = 404
else: item['file'] = '../outside.html'
path.write_text(json.dumps(receipts))
with self.assertRaises(ValueError):
aamas.read_pages(snapshots=root)
def test_reviewed_section_counts_and_year_are_required(self):
with tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
source = self.snapshots(root/'source')
with self.assertRaises(ValueError):
aamas.collect(2012, root/'out', snapshots=source)
self.assertFalse((root/'out/aamas-proceedings-2012.json').exists())
with self.assertRaises(ValueError):
aamas.collect(2025, root/'future', snapshots=source)
self.assertFalse((root/'future').exists())
def test_ids_colliding_across_sections_do_not_produce_a_completed_collection(self):
with tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
source = self.snapshots(root/'source')
receipts_path = source/'receipts.json'
receipts = json.loads(receipts_path.read_text())
for item in receipts['receipts'][1:]:
path = source/item['file']
data = re.sub(r'P[0-9]_1', 'SAME_1', path.read_text()).encode()
path.write_bytes(data)
item.update(bytes=len(data), sha256=hashlib.sha256(data).hexdigest())
receipts_path.write_text(json.dumps(receipts))
small = {key: (*value[:3], 1) for key, value in aamas.SECTIONS.items()}
with patch.dict(aamas.SECTIONS, small, clear=True), self.assertRaises(ValueError):
aamas.collect(2012, root/'out', snapshots=source)
self.assertFalse((root/'out/aamas-proceedings-2012.json').exists())
def test_collection_and_native_ingestion_preserve_formats_evidence_and_missing_abstracts(self):
with tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
source = self.snapshots(root/'source')
small = {key: (*value[:3], 1) for key, value in aamas.SECTIONS.items()}
with patch.dict(aamas.SECTIONS, small, clear=True):
result = aamas.collect(2012, root/'out', snapshots=source)
self.assertEqual(result['records'], 4)
self.assertEqual(len(result['files']), 3)
self.assertFalse(result['database_written'])
self.assertFalse(result['pdfs_downloaded'])
db = root/'sample.sqlite'
for manifest in result['files']:
path = Path(manifest['file'])
self.assertEqual(hashlib.sha256(path.read_bytes()).hexdigest(), manifest['file_sha256'])
for raw in path.read_text().splitlines():
record = json.loads(raw)
evidence = record['metadata']['source_evidence']
self.assertEqual(hashlib.sha256((root/'out'/evidence['file']).read_bytes()).hexdigest(), evidence['sha256'])
ingest_file(db, path)
with sqlite3.connect(db) as connection:
self.assertEqual(connection.execute('SELECT count(*) FROM papers').fetchone()[0], 4)
self.assertEqual(connection.execute('SELECT count(*) FROM submissions').fetchone()[0], 4)
self.assertEqual(connection.execute("SELECT count(*) FROM decisions WHERE status='accepted'").fetchone()[0], 4)
self.assertEqual(connection.execute('SELECT count(*) FROM papers WHERE abstract IS NULL').fetchone()[0], 1)
metadata = [json.loads(r[0]) for r in connection.execute('SELECT metadata_json FROM source_records')]
self.assertEqual({r['publication_format'] for r in metadata}, {'full_paper','extended_abstract','demo','doctoral_abstract'})
namespaces = {r[0] for r in connection.execute('SELECT DISTINCT namespace FROM tags')}
self.assertEqual(namespaces, {'aamas_proceedings:publication_format', 'aamas_proceedings:session'})
self.assertEqual(connection.execute('PRAGMA foreign_key_check').fetchall(), [])
+89
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@@ -0,0 +1,89 @@
"""Cross-source publisher identities must preserve attempts and decision history."""
import hashlib
import json
from pathlib import Path
import sqlite3
import tempfile
import unittest
from paper_atlas.db.submissions import identities_for_row
from paper_atlas.ingestion.records import ingest_file
DOI = '10.1234/aamas.identity.example'
def row(source, external_id, *, venue='AAMAS', year=2012, track='demo', status='accepted', identifiers=None):
return {'source': source, 'external_id': external_id,
'url': 'https://example.org/'+source+'/'+external_id,
'title': 'A shared publication with independently recorded evidence',
'abstract': 'An independently recorded source abstract.',
'authors': ['Jane Doe', 'Bob Smith'],
'identifiers': identifiers if identifiers is not None else {'doi': DOI},
'venue': venue, 'year': year, 'track': track, 'status': status,
'observed_at': '2026-11-09T00:00:00Z',
'raw_decision': source+' observed '+status,
'metadata': {'original_source': source}, 'tags': []}
def ingest(db, root, record):
path = root/(record['source']+'-'+record['external_id'].replace('/', '-')+'.jsonl')
path.write_text(json.dumps(record)+'\n')
path.with_suffix('.manifest.json').write_text(json.dumps({
'source': record['source'], 'parser_version': 1, 'venue': record['venue'],
'year': record['year'], 'track': record['track'], 'count': 1,
'list_url': 'https://example.org/'+record['source'], 'status': 'partial',
'file_sha256': hashlib.sha256(path.read_bytes()).hexdigest(),
'missing_abstract_count': 0}))
ingest_file(db, path)
class AamasPublicationIdentityTests(unittest.TestCase):
def test_only_accepted_known_publisher_rows_supply_publication_doi_identity(self):
record = row('aamas_proceedings', '2012/D1_1', identifiers={'doi': 'https://doi.org/'+DOI.upper()})
self.assertEqual(identities_for_row(record), [('publication_doi', DOI)])
for status in ['rejected', 'desk_rejected', 'withdrawn', 'under_review', 'unknown']:
with self.subTest(status=status):
self.assertEqual(identities_for_row({**record, 'status': status}), [])
self.assertEqual(identities_for_row({**record, 'source': 'unverified_source'}), [])
def test_same_edition_doi_joins_sources_in_both_orders_without_duplicate_attempts(self):
publisher = row('aamas_proceedings', '2012/D1_1')
bibliography = row('dblp', 'conf/atal/Example12')
for order in [(publisher, bibliography), (bibliography, publisher)]:
with self.subTest(first=order[0]['source']), tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
db = root/'sample.sqlite'
for record in order:
ingest(db, root, record)
ingest(db, root, publisher)
with sqlite3.connect(db) as connection:
self.assertEqual(connection.execute('SELECT count(*) FROM papers').fetchone()[0], 1)
self.assertEqual(connection.execute('SELECT count(*) FROM source_records').fetchone()[0], 2)
self.assertEqual(connection.execute('SELECT count(*) FROM submissions').fetchone()[0], 1)
self.assertEqual(connection.execute('SELECT count(*) FROM submission_sources').fetchone()[0], 2)
self.assertEqual(connection.execute('SELECT count(*) FROM decision_sources').fetchone()[0], 2)
self.assertEqual(connection.execute('SELECT scheme,value FROM submission_identifiers').fetchall(), [('publication_doi', DOI)])
metadata = [json.loads(r[0]) for r in connection.execute('SELECT metadata_json FROM source_records')]
self.assertEqual({r['original_source'] for r in metadata}, {'aamas_proceedings', 'dblp'})
self.assertEqual(connection.execute('PRAGMA foreign_key_check').fetchall(), [])
def test_cross_venue_rejection_and_distinct_tracks_remain_separate_attempts(self):
with tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
db = root/'sample.sqlite'
rejected = row('openreview_snapshot', 'original-forum', venue='AAAI', year=2011,
track='main', status='rejected', identifiers={'arxiv': '1101.00001', 'openreview': 'original-forum'})
accepted = row('aamas_proceedings', '2012/D1_1', identifiers={'arxiv': '1101.00001', 'doi': DOI})
another_track = row('aamas_proceedings', '2012/F1_1', track='proceedings_unspecified', identifiers={'doi': DOI})
for record in [rejected, accepted, another_track]:
ingest(db, root, record)
with sqlite3.connect(db) as connection:
self.assertEqual(connection.execute('SELECT count(*) FROM papers').fetchone()[0], 1)
self.assertEqual(connection.execute('SELECT count(*) FROM submissions').fetchone()[0], 3)
history = connection.execute('''SELECT v.acronym,e.year,e.track,d.status FROM decisions d
JOIN submissions s ON s.id=d.submission_id JOIN editions e ON e.id=s.edition_id
JOIN venues v ON v.id=e.venue_id ORDER BY v.acronym,e.track''').fetchall()
self.assertEqual(set(history), {('AAAI',2011,'main','rejected'),('AAMAS',2012,'demo','accepted'),('AAMAS',2012,'proceedings_unspecified','accepted')})
self.assertEqual(connection.execute('SELECT count(*) FROM decision_sources').fetchone()[0], 3)
self.assertEqual(connection.execute('PRAGMA foreign_key_check').fetchall(), [])
+227
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@@ -0,0 +1,227 @@
from contextlib import closing, redirect_stdout
import io
import json
import os
from pathlib import Path
import tempfile
import unittest
import uuid
from paper_atlas import querying
from paper_atlas.curation.annotations import (assert_annotation, available, initialize, main,
observations, retract_annotation)
from paper_atlas.db.backend import open_store
from paper_atlas.db.store import Store
from paper_atlas.postgres import schema
from paper_atlas.postgres.client import connect
from paper_atlas.postgres.migration import migrate
class AnnotationTests(unittest.TestCase):
def setUp(self):
self.tmp = tempfile.TemporaryDirectory(); self.addCleanup(self.tmp.cleanup)
self.db = Path(self.tmp.name) / 'sample.sqlite'
self.store = Store(self.db); self.addCleanup(self.store.conn.close)
self.c = self.store.conn
self.paper, self.record = self.store.record('fixture', 'one', 'https://example.org/one', 'First research', None, [])
self.other, self.other_record = self.store.record('fixture', 'two', 'https://example.org/two', 'Other research', None, [])
self.store.record_tags(self.paper, self.record, 'fixture', [{'namespace':'fixture:topic','value':'original'}])
self.c.commit()
def add(self, **changes):
args = dict(paper=self.paper, kind='tag', namespace='custom:topic', value='reading',
request_id='request-one', evidence_key='manual:reading', reason='Reviewed metadata', actor='reviewer')
args.update(changes)
return assert_annotation(self.c, **args)
def query(self, *args):
self.c.commit()
with redirect_stdout(io.StringIO()) as output:
querying.main(['--db', str(self.db), *map(str, args)])
return json.loads(output.getvalue())
def test_read_does_not_install_extension_and_write_requires_explicit_init(self):
self.assertFalse(available(self.c))
self.assertEqual(observations(self.c, self.paper), [])
with self.assertRaisesRegex(RuntimeError, 'init explicitly'):
self.add()
self.assertEqual(self.query('--research-type', 'custom:method=empirical'), [])
self.assertFalse(available(self.c))
self.assertEqual(len(schema.inspect(self.c)), 21)
def test_schema_upgrade_is_transactional_and_marker_mismatch_fails_closed(self):
self.assertTrue(initialize(self.c)); self.c.rollback()
self.assertFalse(available(self.c))
self.c.execute("INSERT INTO schema_migrations(name) VALUES('annotation_events_v1')")
with self.assertRaisesRegex(RuntimeError, 'mismatch'):
initialize(self.c)
self.c.rollback()
self.assertTrue(initialize(self.c)); self.assertFalse(initialize(self.c))
self.assertEqual(len(schema.inspect(self.c)), 22)
def test_unmarked_table_cannot_receive_assertions(self):
initialize(self.c)
self.c.execute("DELETE FROM schema_migrations WHERE name='annotation_events_v1'")
with self.assertRaisesRegex(RuntimeError, 'init explicitly'):
self.add()
self.assertEqual(self.c.execute('SELECT count(*) FROM annotation_events').fetchone()[0], 0)
def test_types_tags_and_platform_labels_are_independent_and_queryable(self):
initialize(self.c)
self.add()
self.add(kind='research_type', namespace='custom:topic', request_id='type', value='reading')
self.assertEqual(len(self.query('--tag', 'custom:topic=reading')), 1)
self.assertEqual(len(self.query('--research-type', 'custom:topic=reading')), 1)
self.assertEqual(len(self.query('--tag', 'fixture:topic=original')), 1)
detail = self.query('--paper', self.paper)[0]
self.assertEqual(len(detail['annotation_tags']), 1)
self.assertEqual(len(detail['research_types']), 1)
self.assertNotIn('annotation_history', detail)
self.assertEqual(detail['tags'][0]['namespace'], 'fixture:topic')
def test_repeated_request_is_idempotent_and_changed_content_fails(self):
initialize(self.c); event = self.add()
self.assertEqual(self.add(), event)
for change in ({'value':'different'}, {'kind':'research_type'}, {'reason':'changed'}, {'paper':self.other}):
with self.assertRaisesRegex(ValueError, 'different annotation'):
self.add(**change)
self.assertEqual(self.c.execute('SELECT count(*) FROM annotation_events').fetchone()[0], 1)
def test_retraction_keeps_original_and_other_assertions_of_same_label(self):
initialize(self.c); first = self.add(); second = self.add(request_id='second', evidence_key='independent')
kwargs = dict(request_id='retract', reason='No longer relevant', actor='reviewer')
removed = retract_annotation(self.c, first, **kwargs)
self.assertEqual(retract_annotation(self.c, first, **kwargs), removed)
self.assertEqual([r['id'] for r in observations(self.c, self.paper)], [second])
self.assertEqual(len(self.query('--paper', self.paper, '--annotation-history')[0]['annotation_history']), 3)
with self.assertRaisesRegex(ValueError, 'already retracted'):
retract_annotation(self.c, first, **{**kwargs,'request_id':'duplicate'})
with self.assertRaisesRegex(ValueError, 'existing assertion'):
retract_annotation(self.c, removed, **{**kwargs,'request_id':'nested'})
def test_source_assertions_require_matching_paper_and_platform(self):
initialize(self.c)
for change in ({'namespace':'fixture:type'}, {'namespace':'other:type','source_record_id':self.record},
{'namespace':'fixture:type','source_record_id':self.other_record}):
with self.assertRaises(ValueError):
self.add(**change)
event = self.add(kind='research_type', namespace='fixture:declared_type', source_record_id=self.record)
with self.assertRaisesRegex(ValueError, 'Manual CLI'):
retract_annotation(self.c, event, request_id='cannot', reason='x', actor='y', custom_only=True)
self.assertEqual(observations(self.c, self.paper)[0]['source_record_id'], self.record)
def test_platform_tag_refresh_preserves_both_custom_kinds(self):
initialize(self.c); self.add(); self.add(kind='research_type', request_id='type')
self.store.record_tags(self.paper, self.record, 'fixture', [{'namespace':'fixture:topic','value':'refreshed'}])
self.assertEqual(len(observations(self.c, self.paper)), 2)
self.assertEqual(len(self.query('--tag','fixture:topic=refreshed')), 1)
self.assertEqual(self.query('--tag','fixture:topic=original'), [])
def test_merge_preserves_retractions_evidence_and_original_paper_ids(self):
initialize(self.c); event = self.add(source_record_id=self.record)
removed = retract_annotation(self.c, event, request_id='withdraw', reason='corrected', actor='reviewer')
active = self.add(request_id='active', kind='research_type', value='survey')
self.store.merge(self.other, self.paper, 'Independently reviewed identity')
rows = observations(self.c, self.other, history=True)
self.assertEqual([r['id'] for r in rows], [event, removed, active])
self.assertEqual({r['original_paper_id'] for r in rows}, {self.paper})
self.assertEqual({r['paper_id'] for r in rows}, {self.other})
self.assertEqual([r['id'] for r in observations(self.c, self.other)], [active])
self.assertEqual(self.add(source_record_id=self.record), event) # exact retry survives canonical merge
self.assertEqual(self.c.execute('PRAGMA foreign_key_check').fetchall(), [])
def test_invalid_input_does_not_create_events(self):
initialize(self.c)
for change in ({'paper':True}, {'paper':999999}, {'kind':'main'}, {'namespace':'arxiv'},
{'namespace':'custom:topic;DROP'}, {'value':' '}, {'reason':''},
{'actor':''}, {'request_id':''}, {'evidence_key':''}, {'source_record_id':True},
{'evidence_url':'file:///etc/passwd'}, {'evidence_url':'https://user:secret@example.org/'}):
with self.subTest(change=change), self.assertRaises(ValueError):
self.add(**change)
self.assertEqual(self.c.execute('SELECT count(*) FROM annotation_events').fetchone()[0], 0)
def test_cli_manual_scope_and_complete_assert_retract_lifecycle(self):
with redirect_stdout(io.StringIO()):
main(['init','--db',str(self.db)])
main(['assert','--db',str(self.db),'--paper',str(self.paper),'--kind','research_type',
'--namespace','custom:method','--value','empirical','--evidence-key','manual:review',
'--request-id','cli-one','--reason','Read abstract','--actor','reviewer'])
self.assertEqual(len(self.query('--research-type','custom:method=empirical')), 1)
event = observations(self.c, self.paper)[0]['id']
with redirect_stdout(io.StringIO()):
main(['retract','--db',str(self.db),'--event',str(event),'--request-id','cli-two',
'--reason','Corrected classification','--actor','reviewer'])
self.assertEqual(self.query('--research-type','custom:method=empirical'), [])
with redirect_stdout(io.StringIO()) as out:
main(['list','--db',str(self.db),'--paper',str(self.paper),'--history'])
self.assertEqual(len(json.loads(out.getvalue())), 2)
@unittest.skipUnless(os.environ.get('PAPER_ATLAS_TEST_PG_SERVICE'), 'Requires approved remote PostgreSQL service')
class PostgreSQLAnnotationTests(unittest.TestCase):
def setUp(self):
self.service = os.environ['PAPER_ATLAS_TEST_PG_SERVICE']
self.target = 'pa_anno_' + uuid.uuid4().hex[:12]
self.tmp = tempfile.TemporaryDirectory(); self.addCleanup(self.tmp.cleanup)
self.db = Path(self.tmp.name) / 'source.sqlite'
self.s = Store(self.db)
self.paper, self.record = self.s.record('fixture','one','https://example.org','Paper',None,[])
self.s.conn.commit()
self.addCleanup(self.s.conn.close); self.addCleanup(self.cleanup)
def cleanup(self):
with connect(self.service) as c:
for name, in c.execute('SELECT nspname FROM pg_namespace WHERE starts_with(nspname,%s)', (self.target,)):
c.execute('DROP SCHEMA ' + schema.quote(name) + ' CASCADE')
def migrate(self):
self.s.conn.commit()
self.s.conn.close() # Freeze/checkpoint the fixture, just like a real source migration.
with redirect_stdout(io.StringIO()):
return migrate(self.db, self.service, Path(self.tmp.name)/'report.json', schema=self.target, min_free_gib=0)
def args(self, **changes):
a = dict(paper=self.paper,kind='research_type',namespace='custom:method',value='survey\x00and\x01',
request_id='native',evidence_key='manual',reason='Reviewed\x00evidence',actor='reviewer')
a.update(changes); return a
def test_native_schema_upgrade_roundtrip_retraction_and_queries(self):
self.migrate()
with closing(open_store(pg_service=self.service, pg_schema=self.target).conn) as c:
self.assertTrue(initialize(c)); self.assertFalse(initialize(c))
event = assert_annotation(c, **self.args()); c.commit()
self.assertEqual(assert_annotation(c, **self.args()), event)
self.assertEqual(observations(c,self.paper)[0]['value'], 'survey\x00and\x01')
c.commit()
with redirect_stdout(io.StringIO()) as out:
querying.main(['--pg-service',self.service,'--pg-schema',self.target,'--paper',str(self.paper)])
self.assertEqual(json.loads(out.getvalue())[0]['research_types'][0]['id'], event)
with closing(open_store(pg_service=self.service,pg_schema=self.target).conn) as c:
retract_annotation(c,event,request_id='removed',reason='Changed',actor='reviewer');c.commit()
self.assertEqual(observations(c,self.paper), [])
self.assertEqual(len(observations(c,self.paper,history=True)), 2)
def test_initialized_sqlite_extension_migrates_all_rows_hashes_and_identity(self):
initialize(self.s.conn)
event = assert_annotation(self.s.conn, **self.args())
retract_annotation(self.s.conn,event,request_id='retracted',reason='Corrected',actor='reviewer')
report = self.migrate()
self.assertEqual(len(report['tables']),22)
self.assertEqual(report['tables']['annotation_events']['source_rows'],2)
self.assertEqual(report['tables']['annotation_events']['source_sha256'],report['tables']['annotation_events']['target_sha256'])
with closing(open_store(pg_service=self.service,pg_schema=self.target).conn) as c:
new = assert_annotation(c, **self.args(request_id='after-migration'))
self.assertGreater(new,2); c.commit()
self.assertEqual(len(observations(c,self.paper,history=True)),3)
def test_native_upgrade_rollback_keeps_legacy_schema_usable(self):
self.migrate()
with closing(open_store(pg_service=self.service,pg_schema=self.target).conn) as c:
initialize(c); c.rollback()
self.assertFalse(available(c))
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0],1)
self.assertTrue(initialize(c))
with self.assertRaises(ValueError):
assert_annotation(c, **self.args(namespace='wrong:type',source_record_id=self.record))
self.assertEqual(c.execute('SELECT count(*) FROM annotation_events').fetchone()[0],0)
c.rollback()
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"""Stable-attempt correction, rollback and stale whole-volume refresh on both engines."""
from contextlib import closing, redirect_stdout
import copy
import hashlib
import io
import json
import os
from pathlib import Path
import tempfile
import unittest
import uuid
from paper_atlas.db.backend import open_store
from paper_atlas.db.edition_scopes import KEY
from paper_atlas.db.store import Store
from paper_atlas.ingestion.edition_tracks import proposal,apply_plan,verify,validate,run
from paper_atlas.ingestion.event_identity import database_identity,values
from paper_atlas.ingestion.records import ingest_file
from paper_atlas.postgres.client import connect
from paper_atlas.postgres.migration import migrate
from paper_atlas.postgres.schema import quote
def seed(db):
s=Store(db); rows=[]
for i,track in enumerate(['main','survey','doctoral_consortium','proceedings_unspecified'],1):
external='entry'+str(i);doi='10.1234/entry'+str(i)
p,r=s.record('fixture',external,'https://example.org/'+external,'Publication '+external,
'Abstract with NUL\x00 and SOH\x01',[],{'doi':doi})
eid=s.decision(p,r,'JOINT',2022,'main',external,'https://example.org/'+external,'accepted','published',identities=[('doi',doi)],observed_at='2022-01-01T00:00:00Z')
sid=s.conn.execute('SELECT id FROM submissions WHERE source_record_id=?',(r,)).fetchone()[0]
s.record_tags(p,r,'fixture',[{'namespace':'fixture:subject','value':'Original'}])
rows.append(dict(submission_id=sid,source_record_id=r,external_id=external,source='fixture',doi=doi,
from_edition_id=eid,year=2022,venue='JOINT',venue_names=['JOINT'],track=track,
section=track,evidence_url='https://example.org/proceedings/2022/',evidence_sha256='a'*64))
source=s.conn.execute("SELECT id FROM sources WHERE name='fixture'").fetchone()[0]
s.conn.execute("INSERT INTO edition_sources VALUES(?,?,?,'complete',4,4,'checkpoint','2022-01-01T00:00:00Z',NULL)",(eid,source,'https://example.org/volume'))
s.conn.commit();s.conn.close();return {'format':1,'records':rows}
class TrackCases:
def store(self):return open_store(**self.target)
def plan(self,c):return proposal(c,self.inventory,database_identity(c,self.target.get('db')))
def test_move_preserves_all_history_tags_text_and_stable_identities(self):
with closing(self.store().conn)as c:
plan=self.plan(c);before=plan['before']['protected'];r=apply_plan(c,plan);c.commit()
self.assertEqual((r['events_moved'],r['records_verified']),(3,4))
self.assertEqual(r['protected'],before)
self.assertEqual(apply_plan(c,plan)['status'],'already_applied')
self.assertEqual(values(c.execute('SELECT status,expected_count,imported_count FROM edition_sources ORDER BY edition_id')),[['partial',1,1]]*4)
self.assertEqual(c.execute('SELECT count(*) FROM submissions').fetchone()[0],4)
self.assertEqual(c.execute('SELECT count(*) FROM decisions').fetchone()[0],4)
self.assertEqual(c.execute('SELECT count(*) FROM paper_merges').fetchone()[0],0)
def test_source_record_refresh_keeps_scope_and_original_attempt(self):
with closing(self.store().conn)as c:
plan=self.plan(c);apply_plan(c,plan);c.commit()
with closing(self.store().conn)as c:
# Use Store methods with the same writer connection as production.
s=object.__new__(Store);s.conn=c;s.event_identity=True
r=self.inventory['records'][1];metadata=json.loads(c.execute('SELECT metadata_json FROM source_records WHERE id=?',(r['source_record_id'],)).fetchone()[0]);saved=metadata[KEY]
p,record=s.record('fixture',r['external_id'],'https://example.org/new','Refreshed title',None,[],{'doi':r['doi']},{'new_source_field':True})
eid=s.decision(p,record,'JOINT',2022,'main',r['external_id'],'https://example.org/entry2','accepted','published',identities=[('doi',r['doi'])],observed_at='2022-01-01T00:00:00Z')
self.assertEqual(c.execute('SELECT track FROM editions WHERE id=?',(eid,)).fetchone()[0],'survey')
self.assertEqual(c.execute('SELECT count(*) FROM submissions').fetchone()[0],4)
self.assertEqual(json.loads(c.execute('SELECT metadata_json FROM source_records WHERE id=?',(record,)).fetchone()[0])[KEY],saved)
with self.assertRaisesRegex(ValueError,'cannot supply'):
s.record('fixture',r['external_id'],'https://example.org/new','Forged',None,[],metadata={KEY:[]})
c.rollback()
def test_stale_snapshot_and_partial_inventory_are_rejected(self):
with closing(self.store().conn)as c:
plan=self.plan(c)
c.execute("UPDATE papers SET title='Changed' WHERE id=(SELECT paper_id FROM submissions WHERE id=?)",(self.inventory['records'][0]['submission_id'],))
with self.assertRaisesRegex(ValueError,'Stale'):apply_plan(c,plan)
c.rollback()
bad=copy.deepcopy(self.inventory);bad['records'].pop()
with self.assertRaisesRegex(ValueError,'every attempt'):proposal(c,bad,database_identity(c,self.target.get('db')))
bad=copy.deepcopy(self.inventory);bad['records'][0]['doi']='10.1234/wrong'
with self.assertRaisesRegex(ValueError,'DOI'):proposal(c,bad,database_identity(c,self.target.get('db')))
def test_failure_after_updates_rolls_back_all_scope_and_metadata_changes(self):
with closing(self.store().conn)as c:
plan=self.plan(c)
# A late coverage failure must roll back earlier moved attempts.
source=c.execute("SELECT id FROM sources WHERE name='fixture'").fetchone()[0]
c.execute("INSERT INTO sources(name,homepage) VALUES('other','https://example.org')")
other=c.execute("SELECT id FROM sources WHERE name='other'").fetchone()[0]
c.execute('UPDATE edition_sources SET source_id=? WHERE source_id=?',(other,source));c.commit()
plan=self.plan(c)
try:
with self.assertRaisesRegex(ValueError,'outside'):apply_plan(c,plan)
finally:c.rollback()
self.assertEqual(self.plan(c)['before'],plan['before'])
self.assertEqual(c.execute('SELECT count(*) FROM editions').fetchone()[0],1)
def test_import_old_whole_volume_fails_without_corrupting_coverage(self):
with closing(self.store().conn)as c:
plan=self.plan(c);apply_plan(c,plan);c.commit()
r=self.inventory['records'][1];path=self.root/'old.jsonl'
row=dict(source='fixture',external_id=r['external_id'],url='https://example.org/entry2',title='Old title',authors=[],identifiers={'doi':r['doi']},venue='JOINT',year=2022,track='main',status='accepted')
path.write_text(json.dumps(row)+'\n');path.with_suffix('.manifest.json').write_text(json.dumps(dict(source='fixture',venue='JOINT',year=2022,track='main',count=1,list_url='https://example.org/volume',status='complete')))
with self.assertRaisesRegex(ValueError,'Recollect'):ingest_file(self.target.get('db'),path,**{k:v for k,v in self.target.items()if k!='db'})
with closing(self.store().conn)as c:verify(c,plan)
def test_nonempty_target_and_alias_drift_fail_before_moving(self):
with closing(self.store().conn)as c:
c.execute("INSERT INTO venue_aliases VALUES((SELECT id FROM venues WHERE acronym='JOINT'),'ADDED')")
with self.assertRaisesRegex(ValueError,'aliases'):self.plan(c)
c.rollback()
s=object.__new__(Store);s.conn=c;s.event_identity=True
p,r=s.record('fixture','collision','https://example.org/collision','Distinct contribution',None,[],{'doi':'10.1234/collision'})
s.decision(p,r,'JOINT',2022,'survey','collision','https://example.org/collision','accepted','published')
with self.assertRaisesRegex(ValueError,'Nonempty target'):self.plan(c)
c.rollback()
self.assertEqual(c.execute('SELECT count(*) FROM submissions').fetchone()[0],4)
def test_repeated_plan_detects_coverage_or_scope_evidence_drift(self):
with closing(self.store().conn)as c:
plan=self.plan(c);apply_plan(c,plan);c.commit()
c.execute("UPDATE edition_sources SET imported_count=99")
with self.assertRaisesRegex(ValueError,'coverage'):apply_plan(c,plan)
c.rollback()
record=self.inventory['records'][0]['source_record_id']
m=json.loads(c.execute('SELECT metadata_json FROM source_records WHERE id=?',(record,)).fetchone()[0]);m[KEY]=[]
c.execute('UPDATE source_records SET metadata_json=? WHERE id=?',(json.dumps(m),record))
with self.assertRaisesRegex(ValueError,'unchanged track'):apply_plan(c,plan)
c.rollback()
def test_cli_hash_binding_preflight_and_duplicate_inventory(self):
inventory=self.root/'inventory.json';inventory.write_text(json.dumps(self.inventory))
planfile=self.root/'plan.json';p=run(self.target.get('db'),planfile,inventory=inventory,**{k:v for k,v in self.target.items()if k!='db'})
with self.assertRaisesRegex(ValueError,'hash'):run(self.target.get('db'),self.root/'bad.json',plan=planfile,plan_sha256='0'*64,**{k:v for k,v in self.target.items()if k!='db'})
report=run(self.target.get('db'),self.root/'applied.json',plan=planfile,plan_sha256=hashlib.sha256(planfile.read_bytes()).hexdigest(),**{k:v for k,v in self.target.items()if k!='db'})
self.assertEqual(report['events_moved'],3)
bad=copy.deepcopy(self.inventory);bad['records'].append(bad['records'][0])
with self.assertRaisesRegex(ValueError,'Repeated'):validate(bad)
class SQLiteTrackTests(TrackCases,unittest.TestCase):
def setUp(self):
t=tempfile.TemporaryDirectory();self.addCleanup(t.cleanup);self.root=Path(t.name);db=self.root/'source.sqlite'
self.inventory=seed(db);self.target={'db':db}
@unittest.skipUnless(os.environ.get('PAPER_ATLAS_TEST_PG_SERVICE'),'Requires approved remote PostgreSQL service')
class PostgreSQLTrackTests(TrackCases,unittest.TestCase):
def setUp(self):
t=tempfile.TemporaryDirectory();self.addCleanup(t.cleanup);self.root=Path(t.name);db=self.root/'source.sqlite';self.inventory=seed(db)
self.service=os.environ['PAPER_ATLAS_TEST_PG_SERVICE'];self.schema='pa_tracks_'+uuid.uuid4().hex[:12];self.addCleanup(self.cleanup)
with redirect_stdout(io.StringIO()):migrate(db,self.service,self.root/'migration.json',schema=self.schema,min_free_gib=0)
self.target={'pg_service':self.service,'pg_schema':self.schema}
def cleanup(self):
with connect(self.service)as c:
for name, in c.execute('SELECT nspname FROM pg_namespace WHERE starts_with(nspname,%s)',(self.schema,)):
c.execute('DROP SCHEMA '+quote(name)+' CASCADE')
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from contextlib import closing, redirect_stdout, contextmanager
import io
import json
import os
from pathlib import Path
import sqlite3
import tempfile
import unittest
import uuid
from importlib.resources import files
from paper_atlas.db.store import Store
from paper_atlas.db.backend import open_store
from paper_atlas.db.events import has_event_key
from paper_atlas.collectors.dblp import XML_SHA
from paper_atlas.ingestion.event_identity import plan, upgrade, exact_counts
from paper_atlas.ingestion.records import ingest_file
from paper_atlas.ingestion.backfill import backfill
from paper_atlas.postgres.client import connect
from paper_atlas.postgres.schema import quote
from paper_atlas.postgres.migration import migrate
from paper_atlas import querying
@contextmanager
def opened_store(**kwargs):
store=open_store(**kwargs)
try:
yield store
finally:
store.conn.close()
def legacy(db):
sql = files('paper_atlas.db').joinpath('schema.sql').read_text().replace(" event_key TEXT NOT NULL DEFAULT '',\n", '').replace('UNIQUE(venue_id,year,track,event_key)', 'UNIQUE(venue_id,year,track)')
c = sqlite3.connect(db); c.executescript(sql); c.close()
s = Store(db)
p,r = s.record('dblp','conf/www/Fall95','https://example.org/fall','Same paper in two events',
'Abstract\x00with\x01text',['A Person'],{'arxiv':'2501.00001'})
s.record_tags(p,r,'dblp',[{'namespace':'dblp:booktitle','value':'WWW (Fall)'}])
s.decision(p,r,'Legacy',1995,'main','conf/www/Fall95','https://example.org/accept','accepted','Accept')
s.conn.execute("UPDATE venues SET acronym='WWW',name='WWW'")
meta={'snapshot_sha256':XML_SHA,'proceedings_key':'conf/www/1995f','bibliographic_year':1995,
'bibliography':{'booktitle':['WWW (Fall)'],'url':['db/conf/www/www1995f.html#Fall95']}}
s.conn.execute('UPDATE source_records SET metadata_json=?',(json.dumps(meta),));s.conn.commit();s.conn.close()
return p,r
def add(store, external, event=None, status='accepted', venue='WWW', year=1995):
p,r = store.record('fixture',external,'https://example.org/'+external,'Same paper in two events',
'Abstract\x00with\x01text',['A Person'],{'arxiv':'2501.00001'})
edition = store.decision(p,r,venue,year,'main',external,'https://example.org/'+status,status,status,event_key=event)
return p,r,edition
def file(root, name, rows, event=None):
p=root/(name+'.jsonl');p.write_text(''.join(json.dumps(r)+'\n'for r in rows))
manifest={'source':'fixture','venue':'WWW','year':1995,'track':'main','count':len(rows),'list_url':'https://example.org/'+name}
if event is not None:manifest['event_key']=event
p.with_suffix('.manifest.json').write_text(json.dumps(manifest));return p
class EventIdentityTests(unittest.TestCase):
def setUp(self):
t=tempfile.TemporaryDirectory();self.addCleanup(t.cleanup);self.root=Path(t.name);self.db=self.root/'sample.sqlite'
def test_same_paper_distinct_events_keep_both_attempts_and_decisions(self):
s=Store(self.db);self.addCleanup(s.conn.close)
paper,_,spring=add(s,'spring','www-1995-spring','rejected');_,_,fall=add(s,'fall','www-1995-fall')
s.conn.commit();self.assertNotEqual(spring,fall)
with redirect_stdout(io.StringIO())as out:querying.main(['--db',str(self.db),'--paper',str(paper)])
row=json.loads(out.getvalue())[0];self.assertEqual({a['event_key']for a in row['submissions']},{'www-1995-spring','www-1995-fall'})
self.assertEqual([a['event_key']for a in row['known_acceptances']],['www-1995-fall'])
self.assertEqual({a['latest_status']for a in row['submissions']},{'rejected','accepted'})
with redirect_stdout(io.StringIO())as out:querying.main(['--db',str(self.db),'--venue','WWW','--event-key','www-1995-spring','--status','rejected'])
self.assertEqual(len(json.loads(out.getvalue())),1)
def test_explicit_migration_preserves_ids_history_and_source_bytes(self):
paper,record=legacy(self.db);proposal=plan(self.db);self.assertFalse(proposal['before']['event_column'])
result=upgrade(proposal,self.db);self.assertEqual(result['updated_editions'],1)
self.assertEqual(result['after']['protected'],proposal['before']['protected'])
self.assertEqual(result['after']['editions_sha256'],proposal['before']['editions_sha256'])
self.assertEqual(upgrade(proposal,self.db)['status'],'already_applied')
s=Store(self.db);self.addCleanup(s.conn.close)
self.assertEqual(s.conn.execute('SELECT id,event_key FROM editions').fetchall(),[(1,'www-1995-fall')])
# An old file without event_key still has its original source anchor.
self.assertEqual(s.decision(paper,record,'WWW',1995,'main','conf/www/Fall95','https://example.org/accept','accepted','Accept'),1)
self.assertEqual(s.conn.execute('SELECT count(*) FROM submissions').fetchone()[0],1)
self.assertEqual(s.conn.execute('PRAGMA foreign_key_check').fetchall(),[])
def test_unverified_legacy_volume_is_not_automatically_labelled(self):
legacy(self.db)
with sqlite3.connect(self.db)as c:c.execute("UPDATE source_records SET metadata_json='{}'")
with self.assertRaisesRegex(ValueError,'complete pinned Fall'):plan(self.db)
with sqlite3.connect(self.db)as c:self.assertFalse(has_event_key(c))
def test_stale_plan_rolls_back_before_schema_change(self):
legacy(self.db);proposal=plan(self.db)
with sqlite3.connect(self.db)as c:c.execute("UPDATE editions SET track='unspecified'")
with self.assertRaisesRegex(ValueError,'stale'):upgrade(proposal,self.db)
with sqlite3.connect(self.db)as c:self.assertFalse(has_event_key(c));self.assertEqual(c.execute('SELECT track FROM editions').fetchone()[0],'unspecified')
def test_unscoped_source_and_wrong_refresh_event_fail(self):
s=Store(self.db);self.addCleanup(s.conn.close);_,r,e=add(s,'first','www-1995-fall');s.conn.commit()
p,r2=s.record('fixture','unscoped','https://example.org/u','Other work',None,[])
with self.assertRaisesRegex(ValueError,'event_key'):s.decision(p,r2,'WWW',1995,'main','unscoped','https://example.org/u','accepted','Accept')
with self.assertRaisesRegex(ValueError,'Cannot move'):s.decision(p,r,'WWW',1995,'main','first','https://example.org/u','accepted','Accept',event_key='www-1995-spring')
self.assertEqual(s.conn.execute('SELECT count(*) FROM editions').fetchone()[0],1)
def test_pinned_fall_cannot_claim_spring(self):
p,r=legacy(self.db);upgrade(plan(self.db),self.db);s=Store(self.db);self.addCleanup(s.conn.close)
with self.assertRaisesRegex(ValueError,'pinned WWW Fall'):s.decision(p,r,'WWW',1995,'main','conf/www/Fall95','https://example.org/u','accepted','Accept',event_key='www-1995-spring')
def test_manifest_event_mismatch_rolls_back_the_whole_file(self):
s=Store(self.db);s.conn.close()
base={'source':'fixture','venue':'WWW','year':1995,'track':'main','status':'accepted','title':'Input work','url':'https://example.org/p','authors':[]}
path=file(self.root,'bad',[dict(base,external_id='a',event_key='www-1995-spring'),dict(base,external_id='b',event_key='www-1995-fall')],'www-1995-spring')
with self.assertRaisesRegex(ValueError,'edition differs'):ingest_file(self.db,path)
with sqlite3.connect(self.db)as c:
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0],0)
self.assertEqual(c.execute('SELECT count(*) FROM editions').fetchone()[0],0)
def test_backfill_selects_the_explicit_event_and_preserves_attempts(self):
s=Store(self.db);add(s,'spring','www-1995-spring','rejected');add(s,'fall','www-1995-fall');s.conn.commit();s.conn.close()
row={'source':'fixture','external_id':'fall','venue':'WWW','year':1995,'track':'main','event_key':'www-1995-fall','status':'accepted','identifiers':{'openreview':'forumFall'}}
path=file(self.root,'backfill',[row],'www-1995-fall')
with redirect_stdout(io.StringIO()):result=backfill(self.db,[path])
self.assertEqual(result['submissions_after'],2)
with sqlite3.connect(self.db)as c:
self.assertEqual(c.execute("SELECT e.event_key FROM submission_identifiers si JOIN submissions s ON s.id=si.submission_id JOIN editions e ON e.id=s.edition_id WHERE si.scheme='openreview' AND si.value='forumFall'").fetchone()[0],'www-1995-fall')
def test_exact_paged_counts_cover_composite_key_boundaries(self):
s=Store(self.db);self.addCleanup(s.conn.close)
for i in range(7):add(s,'entry'+str(i),'www-1995-fall')
s.conn.commit();events=[];counts=exact_counts(s.conn,page_size=2,progress=events.append)
self.assertEqual(counts['source_records'],7)
self.assertEqual(counts['identifiers'],8)
self.assertEqual(counts['submission_sources'],7)
self.assertEqual([e['rows_counted']for e in events if e['table']=='identifiers'and e['complete']],[8])
def test_legacy_single_event_writes_and_reads_remain_available(self):
legacy(self.db);s=Store(self.db);self.addCleanup(s.conn.close)
add(s,'ordinary',venue='COLM',year=2025);s.conn.commit()
with redirect_stdout(io.StringIO())as out:querying.main(['--db',str(self.db),'--venue','COLM'])
self.assertEqual(json.loads(out.getvalue())[0]['known_acceptances'][-1]['event_key'],'')
with self.assertRaisesRegex(ValueError,'migration required'):
querying.main(['--db',str(self.db),'--event-key','www-1995-fall'])
def test_unexpected_extra_edition_column_requires_review(self):
legacy(self.db)
with sqlite3.connect(self.db)as c:c.execute('ALTER TABLE editions ADD COLUMN custom_data TEXT')
with self.assertRaisesRegex(ValueError,'Unexpected edition schema'):plan(self.db)
def test_file_spanning_two_events_without_manifest_key_rolls_back(self):
Store(self.db).conn.close()
base={'source':'fixture','venue':'WWW','year':1995,'track':'main','status':'accepted','title':'Input work','url':'https://example.org/p','authors':[]}
path=file(self.root,'two',[dict(base,external_id='a',event_key='www-1995-spring'),dict(base,external_id='b',event_key='www-1995-fall')])
with self.assertRaisesRegex(ValueError,'exactly one'):ingest_file(self.db,path)
with sqlite3.connect(self.db)as c:self.assertEqual(c.execute('SELECT count(*) FROM submissions').fetchone()[0],0)
def test_cutover_sqlite_backup_remains_protected(self):
legacy(self.db);proposal=plan(self.db);Path(str(self.db.resolve())+'.postgresql-cutover.json').write_text('{}')
with self.assertRaisesRegex(RuntimeError,'cut over'):upgrade(proposal,self.db)
@unittest.skipUnless(os.environ.get('PAPER_ATLAS_TEST_PG_SERVICE'),'Requires approved remote PostgreSQL test service')
class PostgreSQLEventIdentityTests(unittest.TestCase):
def setUp(self):
self.service=os.environ['PAPER_ATLAS_TEST_PG_SERVICE'];self.schema='pa_event_'+uuid.uuid4().hex[:12]
t=tempfile.TemporaryDirectory();self.addCleanup(t.cleanup);self.root=Path(t.name);self.db=self.root/'seed.sqlite';legacy(self.db)
self.addCleanup(self.cleanup)
with redirect_stdout(io.StringIO()):migrate(self.db,self.service,self.root/'migrate.json',schema=self.schema,min_free_gib=0)
def cleanup(self):
with connect(self.service)as c:
for (name,)in c.execute('SELECT nspname FROM pg_namespace WHERE starts_with(nspname,%s)',(self.schema,)).fetchall():c.execute('DROP SCHEMA '+quote(name)+' CASCADE')
def test_native_upgrade_preserves_ids_and_codec_then_accepts_separate_event(self):
proposal=plan(pg_service=self.service,pg_schema=self.schema)
result=upgrade(proposal,pg_service=self.service,pg_schema=self.schema)
self.assertEqual(result['after']['protected'],proposal['before']['protected'])
self.assertEqual(upgrade(proposal,pg_service=self.service,pg_schema=self.schema)['status'],'already_applied')
with opened_store(pg_service=self.service,pg_schema=self.schema)as s:
paper,_,spring=add(s,'spring','www-1995-spring','rejected');s.conn.commit()
self.assertNotEqual(spring,1)
self.assertEqual(s.conn.execute('SELECT abstract FROM papers WHERE id=?',(paper,)).fetchone()[0],'Abstract\x00with\x01text')
with redirect_stdout(io.StringIO())as out:querying.main(['--pg-service',self.service,'--pg-schema',self.schema,'--paper',str(paper)])
row=json.loads(out.getvalue())[0];self.assertEqual(len(row['submissions']),2);self.assertEqual(len(row['known_acceptances']),1)
def test_native_paged_counts_preserve_encoded_composite_key_order(self):
with opened_store(pg_service=self.service,pg_schema=self.schema)as s:
for value in ['a\x00b','a\x01b','a\x02b','z']:
s.conn.execute('INSERT INTO identifiers(scheme,value,paper_id) VALUES(?,?,?)',('custom',value,1))
s.conn.commit();counts=exact_counts(s.conn,page_size=2)
self.assertEqual(counts['identifiers'],6)
self.assertEqual(counts['submissions'],1)
def test_stale_native_plan_is_rejected_and_lock_released(self):
proposal=plan(pg_service=self.service,pg_schema=self.schema)
with opened_store(pg_service=self.service,pg_schema=self.schema)as s:s.conn.execute("UPDATE editions SET track='unspecified'");s.conn.commit()
with self.assertRaisesRegex(ValueError,'stale'):upgrade(proposal,pg_service=self.service,pg_schema=self.schema)
with opened_store(pg_service=self.service,pg_schema=self.schema)as s:self.assertFalse(has_event_key(s.conn))
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"""Regression coverage for primary series once named Workshop, with strict scope boundaries."""
from contextlib import closing
import hashlib
import json
from pathlib import Path
import sqlite3
import tempfile
import unittest
from paper_atlas.collectors.dblp_records import normalize_row
from paper_atlas.collectors.dblp_scope import scope
from paper_atlas.ingestion.records import ingest_file
ICML_HISTORY = 'https://icml.cc/Conferences/2008/past_icmls.shtml.html'
IROS_HISTORY = 'https://www.ieee-ras.org/conferences-workshops/financially-co-sponsored/iros/iros-past-and-future-venues/'
class HistoricalPrimarySeriesTests(unittest.TestCase):
def example(self, family, year, title, book=None, key=None):
key = key or f'conf/{family}/{year}'
book = book or ('ML' if family == 'icml' else 'IROS')
row = {'record_type':'inproceedings', 'key':f'conf/{family}/Paper{year}', 'publtype':None,
'fields':{'title':['An independently identified historical research paper'],
'author':['Jane Doe'], 'booktitle':[book], 'year':[str(year)],
'crossref':[key], 'ee':[f'https://doi.org/10.1234/{family}.{year}']}}
volume = {'record_type':'proceedings', 'key':key,
'fields':{'title':[title], 'year':[str(year)]}}
return row, volume
def test_icml_workshop_primary_editions_are_not_silently_filtered(self):
examples = {
1989:'Proceedings of the Sixth International Workshop on Machine Learning (ML 1989), Cornell University, Ithaca, New York, USA, June 26-27, 1989',
1991:'Proceedings of the Eighth International Workshop (ML91), Northwestern University, Evanston, Illinois, USA',
1992:'Proceedings of the Ninth International Workshop on Machine Learning (ML 1992), Aberdeen, Scotland, UK, July 1-3, 1992',
}
for year, title in examples.items():
with self.subTest(year=year):
row, volume = self.example('icml', year, title)
record, reason = normalize_row(row, {volume['key']:volume}, {'ICML'})
self.assertIsNone(reason)
self.assertEqual((record['venue'],record['year'],record['track'],record['status']), ('ICML',year,'main','accepted'))
self.assertEqual(record['metadata']['proceedings_title'], title)
self.assertEqual(record['metadata']['track_scope_evidence_url'], ICML_HISTORY)
self.assertEqual(record['metadata']['bibliographic_year'], year)
def test_iros_first_three_editions_are_primary_series(self):
examples = {
1988:"IEEE International Workshop on Intelligent Robots and Systems '88, Proceedings. IROS 1988, Tokyo, Japan, October 31 - November 2, 1988",
1989:"IEEE International Workshop on Intelligent Robots and Systems '89, Proceedings. IROS 1989, September 4-6, 1989, Tsukuba, Japan",
1990:"IEEE International Workshop on Intelligent Robots and Systems '90, Towards a New Frontier of Applications, Proceedings. IROS 1990, July 3-6, 1990, Ibaraki, Japan",
}
for year, title in examples.items():
with self.subTest(year=year):
row, volume = self.example('iros', year, title)
record, reason = normalize_row(row, {volume['key']:volume}, {'IROS'})
self.assertIsNone(reason)
self.assertEqual((record['venue'],record['year'],record['track']), ('IROS',year,'main'))
self.assertEqual(record['metadata']['proceedings_title'], title)
self.assertEqual(record['metadata']['track_scope_evidence_url'], IROS_HISTORY)
def test_main_named_icml_predecessors_also_carry_primary_scope_provenance(self):
examples = {
1988:'Machine Learning, Proceedings of the Fifth International Conference on Machine Learning, Ann Arbor, Michigan, USA, June 12-14, 1988',
1990:'Machine Learning, Proceedings of the Seventh International Conference on Machine Learning, Austin, Texas, USA, June 21-23, 1990',
}
for year, title in examples.items():
row, volume = self.example('icml', year, title)
edition, reason = scope(row, volume)
self.assertIsNone(reason)
self.assertEqual(edition['track'], 'main')
self.assertEqual(edition['track_scope_evidence_url'], ICML_HISTORY)
def test_wrong_keys_titles_suffixes_and_unknown_years_keep_workshop_boundary(self):
title = 'Proceedings of the Eighth International Workshop (ML91), Northwestern University, Evanston, Illinois, USA'
for year, changed, book, key in [
(1991,title,'ML','conf/icml/1991w'),
(1991,title,'ML (Workshops)','conf/icml/1991'),
(1991,title.replace('Eighth','Ninth'),'ML','conf/icml/1991'),
(1991,title + ', Affiliated Workshop','ML','conf/icml/1991'),
(1987,'Machine Learning Workshop 1987, Irvine','ML','conf/icml/1987'),
]:
with self.subTest(year=year, book=book, key=key, title=changed):
row, volume = self.example('icml',year,changed,book,key)
record, reason = normalize_row(row,{volume['key']:volume},{'ICML'})
self.assertIsNone(record)
self.assertEqual(reason,'separate_workshop')
self.assertNotIn('track_scope_evidence_url',scope(row,volume)[0])
title = "IEEE International Workshop on Intelligent Robots and Systems '88, Proceedings. IROS 1988, Tokyo, Japan, October 31 - November 2, 1988"
for changed, book, key in [
(title,'IROS','conf/iros/1988w'),
(title,'IROS (Workshops)','conf/iros/1988'),
(title.replace('Tokyo','Another city'),'IROS','conf/iros/1988'),
]:
row, volume = self.example('iros',1988,changed,book,key)
self.assertEqual(normalize_row(row,{volume['key']:volume},{'IROS'})[1],'separate_workshop')
def test_primary_scope_proof_survives_native_file_ingestion(self):
title = 'Proceedings of the Eighth International Workshop (ML91), Northwestern University, Evanston, Illinois, USA'
row, volume = self.example('icml',1991,title)
record, reason = normalize_row(row,{volume['key']:volume},{'ICML'})
self.assertIsNone(reason)
with tempfile.TemporaryDirectory() as temporary:
root=Path(temporary);path=root/'records.jsonl';path.write_text(json.dumps(record)+'\n')
path.with_suffix('.manifest.json').write_text(json.dumps({'source':'dblp','count':1,'list_url':ICML_HISTORY,'file_sha256':hashlib.sha256(path.read_bytes()).hexdigest()}))
ingest_file(root/'test.sqlite',path)
with closing(sqlite3.connect(root/'test.sqlite')) as connection:
self.assertEqual(connection.execute('SELECT track FROM editions').fetchone()[0],'main')
self.assertEqual(connection.execute('SELECT status FROM decisions').fetchone()[0],'accepted')
metadata=json.loads(connection.execute('SELECT metadata_json FROM source_records').fetchone()[0])
self.assertEqual(metadata['proceedings_title'],title)
self.assertEqual(metadata['track_scope_evidence_url'],ICML_HISTORY)
if __name__ == '__main__':
unittest.main()
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"""Historical accepted lists, repeated presentations and preserved work histories."""
import hashlib
import json
from pathlib import Path
import sqlite3
import tempfile
import unittest
from unittest.mock import patch
from paper_atlas.collectors import iclr_archive as archive
from paper_atlas.db.store import Store
from paper_atlas.ingestion.records import ingest_file
OBSERVED = '2026-11-09T00:00:00Z'
def entry(identifier, title='A shared research paper', display='Jane Doe and Bob Smith'):
return f'<li><div><a href="http://arxiv.org/abs/{identifier}">{title}</a>, {display}</div></li>'
def page2015():
return ('<h3>Main Conference - Oral Presentations</h3><ol>'+entry('1412.0001v2')+'</ol>'
'<h3>Main Conference - Poster Presentations</h3><ol>'+entry('1412.0001v2')+'</ol>'
'<h3>Workshop Papers</h3><ol>'+entry('1412.0002', 'A workshop paper')+'</ol>')
class IclrArchiveTests(unittest.TestCase):
def frozen(self, root, year, html):
root.mkdir()
data = html.encode()
(root/'page.html').write_bytes(data)
receipt = {'url': archive.PAGES[year][0], 'file': 'page.html', 'status': 200,
'bytes': len(data), 'sha256': hashlib.sha256(data).hexdigest(), 'finished_at': OBSERVED}
(root/'receipts.json').write_text(json.dumps({'receipts': [receipt]}))
return root
def test_oral_poster_repeat_is_one_attempt_with_all_source_variants(self):
rows = archive.parse_page(page2015(), 2015, {'observed_at': OBSERVED})
main, workshop = rows
self.assertEqual((main['track'], workshop['track']), ('main', 'workshop'))
self.assertEqual(main['identifiers'], {'arxiv': '1412.0001'})
self.assertEqual(main['external_id'], '2015/main/1412.0001')
self.assertEqual(main['metadata']['presentations'], ['oral', 'poster'])
self.assertEqual(len(main['metadata']['source_variants']), 2)
self.assertEqual(main['metadata']['source_variants'][0]['version'], 'v2')
self.assertEqual(main['authors'], ['Jane Doe', 'Bob Smith'])
self.assertTrue(all(r['status'] == 'accepted' and r['abstract'] is None for r in rows))
def test_2014_author_span_outside_paragraph_and_trailing_separator(self):
html = ('<h3>Conference Proceedings</h3><p>conference papers accepted</p>'
'<div><b><a href="http://arxiv.org/abs/1312.0001">A <i>research</i> title</a></b></div>'
'<p><span style="font-style: italic">Jane Doe; </span>'
'<span style="font-style:italic">Bob Smith; Carol Wu;</span></p>'
'<div><a href="http://arxiv.org/abs/1312.0002">Another title</a>'
'<div><i><span>First Author; </span><span>Second Author</span></i></div></div>')
row, unwrapped = archive.parse_page(html, 2014, {'observed_at': OBSERVED})
self.assertEqual(row['title'], 'A research title')
self.assertEqual(row['authors'], ['Jane Doe', 'Bob Smith', 'Carol Wu'])
self.assertEqual(row['metadata']['source_variants'][0]['authors_display'], 'Jane Doe; Bob Smith; Carol Wu;')
self.assertEqual(row['track'], 'main')
self.assertEqual(unwrapped['authors'], ['First Author', 'Second Author'])
def test_same_arxiv_in_different_tracks_keeps_separate_source_attempts(self):
html = page2015().replace('1412.0002', '1412.0001v3')
rows = archive.parse_page(html, 2015, {'observed_at': OBSERVED})
self.assertEqual(len(rows), 2)
self.assertEqual({r['external_id'] for r in rows}, {'2015/main/1412.0001', '2015/workshop/1412.0001'})
self.assertEqual(rows[1]['metadata']['source_variants'][0]['version'], 'v3')
def test_2016_code_links_and_breaks_do_not_become_authors(self):
html = ('<h1>Accepted Papers (Conference Track)</h1><h3>Oral Presentations</h3><ol>'
'<li><a href="http://arxiv.org/abs/1511.00001">A title</a>'
'<a href="https://example.org/code">[code]</a><br>Jane Doe, Bob Smith</li></ol>'
'<h3>Poster Presentations</h3>')
row, = archive.parse_page(html, 2016, {'observed_at': OBSERVED})
self.assertEqual(row['authors'], ['Jane Doe', 'Bob Smith'])
self.assertEqual(row['metadata']['presentations'], ['oral'])
def test_conflicting_repeat_unknown_sections_and_unparsed_links_fail(self):
variants = [page2015().replace('Poster Presentations', 'Other Presentations'),
page2015().replace('</ol>', '</ol><a href="http://arxiv.org/abs/1412.0003">stray</a>', 1),
page2015().replace('Jane Doe and Bob Smith', 'Different Author', 1)]
for html in variants:
with self.subTest(html=html), self.assertRaises(ValueError):
archive.parse_page(html, 2015, {'observed_at': OBSERVED})
def test_arxiv_versions_are_preserved_and_unsafe_links_rejected(self):
self.assertEqual(archive.arxiv_link('https://arxiv.org/pdf/1511.00001v3.pdf'), ('1511.00001', 'v3'))
self.assertIsNone(archive.arxiv_link('https://arxiv.org.example.org/abs/1511.00001'))
for url in ['https://arxiv.org/abs/1511.00001?other=1', 'ftp://arxiv.org/abs/1511.00001',
'https://user@arxiv.org/abs/1511.00001', 'https://arxiv.org/abs/not-a-paper']:
with self.subTest(url=url), self.assertRaises(ValueError):
archive.arxiv_link(url)
def test_receipt_hash_status_path_and_symlink_cannot_escape_snapshot(self):
for failure in ['hash', 'status', 'path', 'symlink']:
with self.subTest(failure=failure), tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
source = self.frozen(root/'source', 2015, page2015())
file = source/'receipts.json'
data = json.loads(file.read_text())
receipt = data['receipts'][0]
if failure == 'hash': receipt['sha256'] = '0'*64
elif failure == 'status': receipt['status'] = 404
elif failure == 'path': receipt['file'] = '../outside.html'
else:
(root/'outside.html').write_text(page2015())
(source/'page.html').unlink()
(source/'page.html').symlink_to(root/'outside.html')
file.write_text(json.dumps(data))
with self.assertRaises(ValueError):
archive.read_page(2015, snapshots=source)
def test_changed_inventory_leaves_no_completed_output(self):
with tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
source = self.frozen(root/'source', 2015, page2015())
with self.assertRaises(ValueError):
archive.collect(2015, root/'out', snapshots=source)
self.assertFalse((root/'out/iclr-archive-2015.json').exists())
def test_native_import_keeps_rejected_to_accepted_history_and_abstract(self):
with tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
source = self.frozen(root/'source', 2015, page2015())
with patch.dict(archive.PAGES, {2015: (archive.PAGES[2015][0], {'main': 1, 'workshop': 1})}):
result = archive.collect(2015, root/'out', snapshots=source)
with self.assertRaises(FileExistsError):
archive.collect(2015, root/'out', snapshots=source)
db = root/'sample.sqlite'
store = Store(db)
pid, rid = store.record('arxiv', '1412.0001', 'https://arxiv.org/abs/1412.0001',
'A shared research paper', 'Keep this canonical abstract.',
['Jane Doe', 'Bob Smith'], {'arxiv': '1412.0001'}, {})
store.decision(pid, rid, 'Earlier Conference', 2014, 'main', 'original-attempt',
'https://example.org/rejected', 'rejected', 'explicit earlier decision', observed_at=OBSERVED)
store.conn.commit()
store.conn.close()
for manifest in result['files']:
ingest_file(db, manifest['file'])
ingest_file(db, manifest['file'])
with sqlite3.connect(db) as c:
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0], 2)
self.assertEqual(c.execute('SELECT abstract FROM papers WHERE id=?', (pid,)).fetchone()[0], 'Keep this canonical abstract.')
history = c.execute('SELECT v.acronym,e.year,d.status FROM decisions d JOIN submissions s ON s.id=d.submission_id JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id WHERE s.paper_id=? ORDER BY e.year', (pid,)).fetchall()
self.assertEqual(history, [('Earlier Conference', 2014, 'rejected'), ('ICLR', 2015, 'accepted')])
self.assertEqual(c.execute('SELECT count(*) FROM submissions').fetchone()[0], 3)
self.assertEqual(c.execute('PRAGMA foreign_key_check').fetchall(), [])
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from contextlib import closing, redirect_stdout
import hashlib
import io
import json
import os
from pathlib import Path
import tempfile
import unittest
from unittest.mock import patch
import uuid
from paper_atlas.collectors.dblp import XML_SHA
from paper_atlas.collectors.dblp_scope import scope
from paper_atlas.collectors.dblp_records import normalize_row
from paper_atlas.db.store import Store
from paper_atlas.db.backend import open_store
from paper_atlas.ingestion.joint_editions import (TARGET, MARKER, inspect, apply_plan, run)
from paper_atlas.postgres.client import connect
from paper_atlas.postgres.migration import migrate
from paper_atlas.postgres.schema import quote
from paper_atlas import querying
def seed(store):
c = store.conn
c.execute("INSERT INTO venues(acronym,name,field,venue_type) VALUES(?,?,'reasoning','conference')", (TARGET,TARGET))
target = c.execute('SELECT id FROM venues WHERE acronym=?',(TARGET,)).fetchone()[0]
for alias in ['ECAI','IJCAI']:
c.execute('INSERT INTO venue_aliases VALUES(?,?)',(target,alias))
for year in [2018,2019,2022]:
metadata = {'snapshot_sha256':XML_SHA,'proceedings_key':'conf/ijcai/'+str(year),
'bibliographic_year':year,'bibliography':{'booktitle':['IJCAI']}}
p,r=store.record('dblp','conf/ijcai/fixture'+str(year),'https://dblp.org/rec/fixture',
'Original publication '+str(year),'Abstract\x00with\x01data',[],
{'doi':'10.24963/ijcai.'+str(year)+'/1'}, {})
store.record_tags(p,r,'dblp',[{'namespace':'dblp:booktitle','value':'IJCAI'}])
store.decision(p,r,'IJCAI',year,'main','fixture'+str(year),'https://example.org/decision','accepted','listed')
stored=json.loads(c.execute('SELECT metadata_json FROM source_records WHERE id=?',(r,)).fetchone()[0]);stored.update(metadata)
c.execute('UPDATE source_records SET metadata_json=? WHERE id=?',(json.dumps(stored),r))
c.commit()
def plan(c):
return {**inspect(c),'database':{'engine':'sqlite','path':'fixture'}}
class JointEditionTests(unittest.TestCase):
def setUp(self):
self.tmp=tempfile.TemporaryDirectory(); self.addCleanup(self.tmp.cleanup)
self.db=Path(self.tmp.name)/'sample.sqlite'
self.store=Store(self.db); self.addCleanup(self.store.conn.close)
seed(self.store); self.c=self.store.conn
def test_apply_preserves_every_protected_row_and_edition_id(self):
before=plan(self.c); ids=[r['id']for r in before['editions']]
result=apply_plan(self.c,before);self.c.commit()
self.assertEqual(result['updated_editions'],2)
self.assertEqual(result['content_fingerprints'],before['content_fingerprints'])
self.assertEqual([r['id']for r in result['editions']],ids)
untouched=self.c.execute('SELECT v.acronym FROM editions e JOIN venues v ON v.id=e.venue_id WHERE e.year=2019').fetchone()[0]
self.assertEqual(untouched,'IJCAI')
self.assertEqual(self.c.execute('PRAGMA foreign_key_check').fetchall(),[])
self.assertEqual(self.c.execute('SELECT count(*) FROM schema_migrations WHERE name=?',(MARKER,)).fetchone()[0],1)
with redirect_stdout(io.StringIO())as out:
querying.main(['--db',str(self.db),'--venue','ECAI'])
self.assertEqual(len(json.loads(out.getvalue())),2)
self.assertEqual(apply_plan(self.c,before)['updated_editions'],0)
def test_refresh_of_old_normalized_source_does_not_recreate_ordinary_edition(self):
before=plan(self.c);apply_plan(self.c,before)
for year in [2018,2022]:
row=self.c.execute('''SELECT r.paper_id,r.id,d.observed_at FROM source_records r
JOIN submissions s ON s.source_record_id=r.id JOIN decisions d ON d.submission_id=s.id
WHERE r.external_id=?''',('conf/ijcai/fixture'+str(year),)).fetchone()
self.store.decision(row[0],row[1],'IJCAI',year,'main','fixture'+str(year),
'https://example.org/decision','accepted','listed',observed_at=row[2])
self.assertEqual(inspect(self.c)['content_fingerprints'],before['content_fingerprints'])
self.assertEqual(self.c.execute('SELECT count(*) FROM editions').fetchone()[0],3)
def test_any_changed_source_text_rejects_stale_plan_before_membership_updates(self):
before=plan(self.c)
self.c.execute("UPDATE source_records SET title='New evidence' WHERE external_id='conf/ijcai/fixture2018'")
with self.assertRaisesRegex(ValueError,'Stale repair plan'):
apply_plan(self.c,before)
self.assertEqual(inspect(self.c)['status'],'ready')
def test_conflicting_target_edition_is_never_merged_or_deleted(self):
target=self.c.execute('SELECT id FROM venues WHERE acronym=?',(TARGET,)).fetchone()[0]
self.c.execute("INSERT INTO editions(venue_id,year,track) VALUES(?,2018,'main')",(target,))
with self.assertRaisesRegex(ValueError,'colliding'):
inspect(self.c)
self.assertEqual(self.c.execute('SELECT count(*) FROM editions WHERE year=2018').fetchone()[0],2)
def test_wrong_source_volume_and_snapshot_fail_closed(self):
original=self.c.execute("SELECT metadata_json FROM source_records WHERE external_id='conf/ijcai/fixture2018'").fetchone()[0]
for key,value in [('proceedings_key','conf/ijcai/2018w'),('snapshot_sha256','wrong'),('bibliographic_year',2017),('bibliography',{'booktitle':['Other']})]:
m=json.loads(original);m[key]=value
self.c.execute("UPDATE source_records SET metadata_json=? WHERE external_id='conf/ijcai/fixture2018'",(json.dumps(m),))
with self.subTest(key=key),self.assertRaisesRegex(ValueError,'Source evidence'):
inspect(self.c)
def test_missing_source_support_and_wrong_aliases_are_not_guessed(self):
self.c.execute("DELETE FROM venue_aliases WHERE alias='ECAI'")
with self.assertRaisesRegex(ValueError,'aliases'):
inspect(self.c)
self.c.rollback()
self.c.execute('DELETE FROM submission_sources WHERE source_record_id=(SELECT id FROM source_records WHERE external_id=?)',('conf/ijcai/fixture2022',))
with self.assertRaisesRegex(ValueError,'Every submission'):
inspect(self.c)
def test_cli_plan_readonly_hash_binding_identity_and_repeat_apply(self):
out=Path(self.tmp.name)/'plan.json'
with redirect_stdout(io.StringIO()):run(self.db,out)
self.assertEqual(inspect(self.c)['status'],'ready')
raw=out.read_bytes();sha=hashlib.sha256(raw).hexdigest()
with patch('paper_atlas.ingestion.joint_editions.open_store')as writer:
with self.assertRaisesRegex(ValueError,'hash differs'):
run(self.db,Path(self.tmp.name)/'bad.json',plan=out,plan_sha256='0'*64)
writer.assert_not_called()
with redirect_stdout(io.StringIO()):
result=run(self.db,Path(self.tmp.name)/'applied.json',plan=out,plan_sha256=sha)
again=run(self.db,Path(self.tmp.name)/'retry.json',plan=out,plan_sha256=sha)
self.assertEqual(result['updated_editions'],2);self.assertEqual(again['updated_editions'],0)
self.assertEqual(result['plan_sha256'],sha);self.assertEqual(again['plan_sha256'],sha)
altered=json.loads(raw);altered['database']['path']='another.sqlite'
bad=Path(self.tmp.name)/'wrong-db.json';bad.write_text(json.dumps(altered))
with self.assertRaisesRegex(ValueError,'another database'):
run(self.db,Path(self.tmp.name)/'wrong-result.json',plan=bad,plan_sha256=hashlib.sha256(bad.read_bytes()).hexdigest())
def test_invalid_empty_plan_fails_before_opening_writer(self):
f=Path(self.tmp.name)/'empty.json';f.write_text('{}')
with patch('paper_atlas.ingestion.joint_editions.open_store')as writer:
with self.assertRaises(ValueError):
run(self.db,Path(self.tmp.name)/'empty-result.json',plan=f,plan_sha256=hashlib.sha256(f.read_bytes()).hexdigest())
writer.assert_not_called()
def test_collector_only_changes_the_two_exact_main_volume_keys(self):
for year in [2018,2019,2022]:
volume={'key':'conf/ijcai/'+str(year),'fields':{'title':['IJCAI '+str(year)],'year':[str(year)]}}
row={'record_type':'inproceedings','key':'conf/ijcai/One'+str(year),'fields':{'booktitle':['IJCAI'],
'year':[str(year)],'crossref':[volume['key']],'title':['Original research title'],
'author':['Jane Doe'],'ee':['https://doi.org/10.24963/ijcai.'+str(year)+'/1']}}
result,error=normalize_row(row,{volume['key']:volume},{'IJCAI','ECAI'})
self.assertIsNone(error)
self.assertEqual(result['venue'],TARGET if year in(2018,2022)else'IJCAI')
self.assertEqual(result['metadata']['bibliography']['booktitle'],['IJCAI'])
self.assertEqual(result['title'],'Original research title')
if year in(2018,2022):
self.assertIn('joint_edition_evidence',result['metadata'])
row['fields']['booktitle']=['IJCAI (Workshop)']
scoped,_=scope(row,volume)
self.assertEqual(scoped['venue'],'IJCAI')
self.assertEqual(scoped['track'],'workshop')
@unittest.skipUnless(os.environ.get('PAPER_ATLAS_TEST_PG_SERVICE'),'Requires approved remote PostgreSQL service')
class PostgreSQLJointTests(unittest.TestCase):
def setUp(self):
self.service=os.environ['PAPER_ATLAS_TEST_PG_SERVICE'];self.target='pa_joint_'+uuid.uuid4().hex[:12]
self.tmp=tempfile.TemporaryDirectory();self.addCleanup(self.tmp.cleanup)
self.db=Path(self.tmp.name)/'sample.sqlite';s=Store(self.db);seed(s);s.conn.close()
self.addCleanup(self.cleanup)
with redirect_stdout(io.StringIO()):migrate(self.db,self.service,Path(self.tmp.name)/'migration.json',schema=self.target,min_free_gib=0)
def cleanup(self):
with connect(self.service)as c:
for name, in c.execute('SELECT nspname FROM pg_namespace WHERE starts_with(nspname,%s)',(self.target,)).fetchall():
c.execute('DROP SCHEMA '+quote(name)+' CASCADE')
def test_native_repair_is_idempotent_keeps_codec_and_provenance(self):
p=Path(self.tmp.name)/'plan.json'
with redirect_stdout(io.StringIO()):
before=run(None,p,pg_service=self.service,pg_schema=self.target)
after=run(None,Path(self.tmp.name)/'applied.json',pg_service=self.service,pg_schema=self.target,plan=p,plan_sha256=hashlib.sha256(p.read_bytes()).hexdigest())
self.assertEqual(after['content_fingerprints'],before['content_fingerprints'])
with closing(open_store(pg_service=self.service,pg_schema=self.target).conn)as c:
self.assertEqual(apply_plan(c,before)['updated_editions'],0)
self.assertEqual(c.execute('SELECT abstract FROM papers ORDER BY id LIMIT 1').fetchone()[0],'Abstract\x00with\x01data')
def test_native_stale_source_plan_preserves_both_original_memberships(self):
with closing(open_store(pg_service=self.service,pg_schema=self.target).conn)as c:
before=plan(c)
c.execute("UPDATE source_records SET title='Changed' WHERE external_id=?",('conf/ijcai/fixture2022',));c.commit()
with self.assertRaisesRegex(ValueError,'Stale repair plan'):
apply_plan(c,before)
c.rollback()
self.assertEqual(inspect(c)['status'],'ready')
+172
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@@ -0,0 +1,172 @@
"""Interactions between event identity and previously independent write safeguards."""
from contextlib import contextmanager, redirect_stdout
import hashlib
import io
import json
import os
from pathlib import Path
import tempfile
import unittest
import uuid
from paper_atlas import querying
from paper_atlas.audits.coverage import report as coverage_report
from paper_atlas.collectors.dblp import XML_SHA
from paper_atlas.curation.annotations import initialize, assert_annotation, retract_annotation, observations
from paper_atlas.db.backend import open_store
from paper_atlas.ingestion.event_identity import plan, upgrade
from paper_atlas.ingestion.records import ingest_file
from paper_atlas.postgres.client import connect
from paper_atlas.postgres.migration import migrate
from paper_atlas.postgres.schema import quote
from tests.test_event_identity import legacy, add
class RuntimeCases:
@contextmanager
def store(self):
s = open_store(**self.target)
try:
yield s
finally:
s.conn.close()
def query(self, *args):
target = (['--db', str(self.target['db'])] if 'db' in self.target else
['--pg-service', self.target['pg_service'], '--pg-schema', self.target['pg_schema']])
with redirect_stdout(io.StringIO()) as out:
querying.main([*target, *map(str,args)])
return json.loads(out.getvalue())
def assertion(self, c, paper, request, **changes):
args = dict(paper=paper, kind='research_type', namespace='custom:method', value='empirical',
request_id=request, evidence_key='review:'+request, actor='reviewer', reason='Reviewed metadata')
args.update(changes)
return assert_annotation(c, **args)
def test_event_upgrade_preserves_annotation_history_and_combined_queries(self):
with self.store() as s:
initialize(s.conn)
event = self.assertion(s.conn,1,'first')
retract_annotation(s.conn,event,request_id='retract',actor='reviewer',reason='Corrected')
self.assertion(s.conn,1,'second')
original = observations(s.conn,1,history=True)
s.conn.commit()
proposal = plan(**self.target)
self.assertEqual(proposal['before']['counts']['annotation_events'],3)
result = upgrade(proposal, **self.target)
self.assertEqual(result['after']['counts'],proposal['before']['counts'])
with self.store() as s:
self.assertEqual(observations(s.conn,1,history=True),original)
paper,_,_ = add(s,'spring','www-1995-spring','rejected')
self.assertEqual(paper,1)
s.conn.commit()
row = self.query('--venue','WWW','--event-key','www-1995-spring','--status','rejected',
'--research-type','custom:method=empirical','--paper',1,'--annotation-history')[0]
self.assertEqual([a['event_key'] for a in row['known_acceptances']],['www-1995-fall'])
self.assertEqual({a['latest_status'] for a in row['submissions']},{'accepted','rejected'})
self.assertEqual(len(row['annotation_history']),3)
self.assertEqual(self.query('--event-key','www-1995-fall','--status','rejected'),[])
def collected(self, name, event, external, *, incremental=False, unscoped=False):
row = dict(source='fixture',external_id=external,url='https://example.org/'+external,
title='Independent contribution '+external,authors=[],abstract='Known abstract',
identifiers={'doi':'10.1234/'+external},venue='WWW',year=1995,track='main',
event_key=event,status='accepted')
p = self.root/(name+'.jsonl');p.write_text(json.dumps(row)+'\n')
manifest = {k:row[k] for k in ('source','venue','year','track','event_key')}
manifest.update(list_url='https://example.org/'+event,count=1,status='partial',
file_sha256=hashlib.sha256(p.read_bytes()).hexdigest())
if incremental:
manifest.update(coverage_mode='incremental',coverage_previous_count=1,
coverage_previous_expected_count=1,coverage_expected_count=2)
if unscoped:
manifest.pop('event_key')
p.with_suffix('.manifest.json').write_text(json.dumps(manifest))
return p
def ingest(self, path):
with redirect_stdout(io.StringIO()):
ingest_file(self.target.get('db'),path,**{k:v for k,v in self.target.items() if k != 'db'})
def test_coverage_labels_both_same_year_events_and_keeps_legacy_readable(self):
registry=self.root/'registry.json'
registry.write_text(json.dumps({'scope_note':'Fixture only','venues':[{'acronym':'WWW','field':'web'}]}))
def snapshot():
return coverage_report(self.target.get('db'),registry,**{k:v for k,v in self.target.items() if k!='db'})['venues'][0]
self.assertEqual([e['event_key']for e in snapshot()['editions']],[''])
upgrade(plan(**self.target),**self.target)
with self.store() as s:
add(s,'spring','www-1995-spring','rejected');s.conn.commit()
result=snapshot();events={e['event_key']:e for e in result['editions']}
self.assertEqual(set(events),{'www-1995-fall','www-1995-spring'})
self.assertEqual((result['imported_submissions'],result['distinct_papers']),(2,1))
self.assertEqual(events['www-1995-fall']['latest_observed_status_counts']['accepted'],1)
self.assertEqual(events['www-1995-spring']['latest_observed_status_counts']['rejected'],1)
self.assertEqual(events['www-1995-fall']['source_record_counts'][0]['source'],'dblp')
self.assertEqual(events['www-1995-spring']['source_record_counts'][0]['source'],'fixture')
def test_incremental_parent_is_scoped_to_exact_event(self):
upgrade(plan(**self.target), **self.target)
self.ingest(self.collected('spring','www-1995-spring','spring-one'))
self.ingest(self.collected('fall','www-1995-fall','fall-one'))
self.ingest(self.collected('append','www-1995-fall','fall-two',incremental=True))
with self.store() as s:
rows = s.conn.execute('''SELECT e.event_key,es.expected_count,es.imported_count FROM edition_sources es
JOIN editions e ON e.id=es.edition_id JOIN sources src ON src.id=es.source_id
WHERE src.name='fixture' ORDER BY e.event_key''').fetchall()
self.assertEqual([tuple(r) for r in rows],[('www-1995-fall',2,2),('www-1995-spring',1,1)])
with self.assertRaisesRegex(ValueError,'event_key'):
self.ingest(self.collected('unscoped','www-1995-spring','unwanted',incremental=True,unscoped=True))
with self.assertRaisesRegex(ValueError,'parent changed'):
self.ingest(self.collected('stale','www-1995-fall','stale',incremental=True))
with self.store() as s:
self.assertEqual(s.conn.execute("SELECT count(*) FROM source_records r JOIN sources src ON src.id=r.source_id WHERE src.name='fixture'").fetchone()[0],3)
def test_joint_refresh_keeps_identity_annotations_and_event_query(self):
upgrade(plan(**self.target), **self.target)
metadata = dict(snapshot_sha256=XML_SHA,proceedings_key='conf/ijcai/2022',
bibliographic_year=2022,bibliography={'booktitle':['IJCAI']})
with self.store() as s:
initialize(s.conn)
paper,record = s.record('dblp','conf/ijcai/Joint22','https://example.org/joint',
'Joint paper',None,[],{'doi':'10.1234/joint'},metadata)
eid = s.decision(paper,record,'IJCAI',2022,'main','conf/ijcai/Joint22','https://example.org/joint','accepted','Accept')
self.assertion(s.conn,paper,'joint')
s.conn.commit()
with self.store() as s:
again,r = s.record('dblp','conf/ijcai/Joint22','https://example.org/joint',
'Corrected joint title',None,[],{'doi':'10.1234/joint'},metadata)
self.assertEqual(again,paper)
self.assertEqual(s.decision(again,r,'IJCAI',2022,'main','conf/ijcai/Joint22','https://example.org/joint','accepted','Accept'),eid)
self.assertEqual(s.conn.execute("SELECT count(*) FROM editions e JOIN venues v ON v.id=e.venue_id WHERE v.acronym='IJCAI' AND e.year=2022").fetchone()[0],0)
s.conn.commit()
for venue in ['IJCAI','ECAI']:
rows = self.query('--venue',venue,'--year',2022,'--event-key','',
'--research-type','custom:method=empirical','--paper',paper)
self.assertEqual(len(rows),1)
self.assertEqual(len(rows[0]['submissions']),1)
self.assertEqual(rows[0]['submissions'][0]['acronym'],'ECAI+IJCAI')
class SQLiteRuntimeTests(RuntimeCases, unittest.TestCase):
def setUp(self):
t=tempfile.TemporaryDirectory();self.addCleanup(t.cleanup);self.root=Path(t.name)
db=self.root/'source.sqlite';legacy(db);self.target={'db':db}
@unittest.skipUnless(os.environ.get('PAPER_ATLAS_TEST_PG_SERVICE'),'Requires approved remote PostgreSQL service')
class PostgreSQLRuntimeTests(RuntimeCases, unittest.TestCase):
def setUp(self):
t=tempfile.TemporaryDirectory();self.addCleanup(t.cleanup);self.root=Path(t.name)
db=self.root/'source.sqlite';legacy(db)
self.service=os.environ['PAPER_ATLAS_TEST_PG_SERVICE'];self.schema='pa_runtime_'+uuid.uuid4().hex[:12]
self.addCleanup(self.cleanup)
with redirect_stdout(io.StringIO()):
migrate(db,self.service,self.root/'migration.json',schema=self.schema,min_free_gib=0)
self.target={'pg_service':self.service,'pg_schema':self.schema}
def cleanup(self):
with connect(self.service) as c:
for name, in c.execute('SELECT nspname FROM pg_namespace WHERE starts_with(nspname,%s)',(self.schema,)):
c.execute('DROP SCHEMA '+quote(name)+' CASCADE')
+1 -1
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@@ -133,7 +133,7 @@ class SubmissionTests(unittest.TestCase):
c.execute("INSERT INTO papers(id,title,title_key) VALUES(1,'Paper','paper')")
c.execute("INSERT INTO source_records VALUES(1,1,'paper',1,'https://example.org/p','Paper','Abstract','[]','{}',CURRENT_TIMESTAMP)")
c.execute("INSERT INTO venues VALUES(1,'ICLR','ICLR','machine_learning','conference')")
c.execute("INSERT INTO editions VALUES(1,1,2026,'main')")
c.execute("INSERT INTO editions(id,venue_id,year,track) VALUES(1,1,2026,'main')")
c.execute("INSERT INTO submissions VALUES(1,1,1,1,'paper',NULL)")
c.execute("INSERT INTO decisions VALUES(1,1,'accepted','Accept','https://example.org/decision','2026-01-01T00:00:00Z',NULL)")
c.commit();c.close()
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@@ -0,0 +1,155 @@
import hashlib
import json
from pathlib import Path
import tempfile
import unittest
from paper_atlas.collectors.www_archive import (ROOT, SPRING, FALL, Sources, collect, decode,
early_review, spring_rows)
class ArchiveTests(unittest.TestCase):
def setUp(self):
t=tempfile.TemporaryDirectory();self.addCleanup(t.cleanup);self.root=Path(t.name);self.cache=self.root/'cache';self.cache.mkdir()
self.pages={ROOT+'www1/PrelimProcs.html':'''<h1>Formal presentations</h1><ol><li><em>Keywords:</em> BUSINESS TRACK?<br><em>Title:</em><b> First contribution</b><br><em>Author:</em>Jane Doe &lt;jane@example.org&gt;<br><li><em>Title:</em><b>Unlinked contribution</b><br><em>Author:</em>John Roe<br></ol>''',
FALL:'<h1>Conference Tracks</h1><ol><li><a href="Agents.html">Agents</a><li><a href="Tutor.html">Tutorials</a></ol>',
ROOT+'www2/Proceedings/Agents.html':'<h3>Panel</h3><dl><dt><a href="a.html">Linked talk</a><dd>Jane Doe<dt>Unlinked talk</a><dd>John Roe</dl>',
ROOT+'www2/Proceedings/Tutor.html':'<h1>Tutorials</h1><dl><dt>Training session<dd>Teacher</dl>'}
for track in ['papers','posters']:
self.pages[SPRING+track+'/author.html']='<b>Doe, Jane</b><ul><li><a href="01/paper.html">Same contribution</a></li></ul><b>Roe, John</b><a href="01/paper.html">Same contribution</a>'
self.pages[SPRING+track+'/abstract.html']='''<h1>Abstracts</h1><a href="#one">Same contribution</a><h3><a href="01/paper.html">Same contribution</a></h3><i>Author: Jane Doe, John Roe<br>Institute</i><p>Actual abstract with <i>inline emphasis</i> and a separator\u2028 preserved.</p><hr><h2>Another session</h2>'''
self.pages[SPRING+'papers/session.html']='<a href="01/paper.html">Same contribution</a>'
def sources(self):
rows=[]
for i,(url,html) in enumerate(sorted(self.pages.items())):
raw=html.encode()if isinstance(html,str)else html;name='source-'+str(i)+'.html';(self.cache/name).write_bytes(raw)
rows.append(dict(url=url,status=200,file=name,bytes=len(raw),sha256=hashlib.sha256(raw).hexdigest()))
p=self.cache/'manifest.json';p.write_text(json.dumps({'sources':rows}));sha=hashlib.sha256(p.read_bytes()).hexdigest()
return Sources(self.cache,sha),sha
def test_offline_batch_separates_tracks_review_and_importable_rows(self):
_,sha=self.sources();out=self.root/'batch';report=collect(self.cache,sha,out)
self.assertEqual(report['ready'],2);self.assertEqual(report['held'],5)
queue=json.loads((out/'import-queue.json').read_text())['files'];self.assertEqual(len(queue),2)
for name in queue:
p=Path(name);rows=[json.loads(l)for l in p.read_text().split('\n') if l];self.assertEqual(len(rows),1)
row=rows[0];self.assertEqual(row['event_key'],'www-1995-spring');self.assertEqual(row['authors'],['Jane Doe','John Roe'])
self.assertIn(row['track'],['main','poster']);self.assertIn('inline emphasis',row['abstract']);self.assertNotIn('Another session',row['abstract'])
self.assertIn('\u2028',row['abstract']);manifest=json.loads(p.with_suffix('.manifest.json').read_text());self.assertEqual(manifest['file_sha256'],hashlib.sha256(p.read_bytes()).hexdigest());self.assertEqual(manifest['status'],'partial')
held=[json.loads(l)for l in(out/'review-candidates.jsonl').read_text().split('\n') if l]
self.assertTrue(all('status'not in r and 'source_evidence'in r for r in held))
self.assertFalse(any('review-candidates'in p for p in queue))
def test_partial_manifest_preserves_full_listing_size_separately_from_ready_count(self):
self.pages[SPRING+'posters/abstract.html']+='<h3><a href="02/other.html">Unlinked poster</a></h3><i>Author: Other Person</i><p>Actual abstract</p>'
_,sha=self.sources();out=self.root/'batch';collect(self.cache,sha,out)
manifest=json.loads((out/'www-1995-spring-poster.manifest.json').read_text())
self.assertEqual((manifest['count'],manifest['source_listing_count'],manifest['held_entry_count']),(1,2,1))
self.assertNotIn('coverage_previous_count',manifest) # Live parent must be independently preflighted.
def test_malformed_href_requires_exact_id_and_two_clean_index_anchors(self):
self.pages[SPRING+'papers/abstract.html']=self.pages[SPRING+'papers/abstract.html'].replace('01/paper.html','01/ paper.html')
sources,_=self.sources();rows,held,_=spring_rows(sources,'papers');self.assertEqual(held,[])
self.assertEqual(rows[0]['url'],SPRING+'papers/01/paper.html');self.assertTrue(rows[0]['metadata']['url_corroborated_by_author_and_session'])
self.assertIn(' ',rows[0]['metadata']['abstract_href_raw'])
def test_main_index_disagreement_fails_without_publishing_batch(self):
self.pages[SPRING+'papers/session.html']='<a href="02/other.html">Other work</a>';_,sha=self.sources();out=self.root/'batch'
with self.assertRaisesRegex(ValueError,'ID sets disagree'):collect(self.cache,sha,out)
self.assertFalse(out.exists())
def test_same_entry_id_with_conflicting_clean_url_is_rejected(self):
self.pages[SPRING+'papers/session.html']='<a href="01/other.html">Same contribution</a>';sources,_=self.sources()
with self.assertRaisesRegex(ValueError,'URLs disagree'):spring_rows(sources,'papers')
def test_poster_without_linked_author_entry_is_held_even_with_abstract(self):
self.pages[SPRING+'posters/author.html']='<b>Doe, Jane</b><a href="#">Same contribution</a>';sources,_=self.sources();rows,held,counts=spring_rows(sources,'posters')
self.assertEqual(rows,[]);self.assertEqual(counts['abstract_entries'],1);self.assertEqual(held[0]['reason'],'abstract_entry_missing_linked_author_index')
def test_unlinked_and_panel_entries_never_become_acceptance_or_rejection(self):
sources,_=self.sources();held,counts=early_review(sources);self.assertEqual(counts,{'first_conference_fields':2,'fall_categories':2,'fall_program_entries':3})
self.assertTrue(any(r['candidate']['title']=='Unlinked talk'for r in held));self.assertTrue(all('status'not in r for r in held))
self.assertEqual(held[0]['candidate']['authors_raw'],['Jane Doe'])
def test_title_disagreement_goes_to_review_with_source_claims(self):
self.pages[SPRING+'papers/abstract.html']=self.pages[SPRING+'papers/abstract.html'].replace('Same contribution','Different contribution');sources,_=self.sources();rows,held,_=spring_rows(sources,'papers')
self.assertEqual(rows,[]);self.assertEqual(held[0]['reason'],'abstract_and_author_index_titles_disagree')
def test_cache_tampering_and_manifest_hash_mismatch_fail_closed(self):
_,sha=self.sources()
with self.assertRaisesRegex(ValueError,'manifest checksum'):Sources(self.cache,'0'*64)
p=next(self.cache.glob('source-*.html'));p.write_bytes(p.read_bytes()+b'x')
with self.assertRaisesRegex(ValueError,'checksum or size'):Sources(self.cache,sha)
def test_cache_cannot_read_paths_outside_snapshot(self):
_,sha=self.sources();p=self.cache/'manifest.json';d=json.loads(p.read_text());d['sources'][0]['file']='../outside.html';p.write_text(json.dumps(d))
with self.assertRaisesRegex(ValueError,'plain files'):Sources(self.cache,hashlib.sha256(p.read_bytes()).hexdigest())
def test_keywords_only_is_missing_abstract_not_invented_summary(self):
self.pages[SPRING+'papers/abstract.html']='<h3><a href="01/paper.html">Same contribution</a></h3><i>Author: Jane Doe</i><p>Keywords: networking, hypertext</p>';sources,_=self.sources();rows,held,_=spring_rows(sources,'papers')
self.assertEqual(rows,[]);self.assertEqual(held[0]['reason'],'missing_abstract')
def test_old_encoding_and_duplicate_abstract_identity(self):
self.assertEqual(decode(b'M\xfcller')[0],'Müller')
self.pages[SPRING+'papers/abstract.html']*=2;sources,_=self.sources()
with self.assertRaisesRegex(ValueError,'Duplicate abstract'):spring_rows(sources,'papers')
def test_existing_output_is_never_overwritten(self):
_,sha=self.sources();out=self.root/'batch';out.mkdir();(out/'keep').write_text('original')
with self.assertRaisesRegex(ValueError,'overwrite'):collect(self.cache,sha,out)
self.assertEqual((out/'keep').read_text(),'original')
def review(self,*,authors=None,author_source='canonical_byline',missing='',page=None):
url=SPRING+'posters/01/paper.html'
self.pages[url]=page or '<h1>Canonical full title</h1><p>Jane Doe, John Roe</p><p>Keywords: web</p><h2>Abstract</h2><p>Body</p>'
_,sha=self.sources();raw=self.pages[url].encode()if isinstance(self.pages[url],str)else self.pages[url]
row=dict(entry_id='01',individual_url=url,individual_sha256=hashlib.sha256(raw).hexdigest(),
title='Canonical full title',authors=authors or ['Jane Doe','John Roe'],author_source=author_source,
reason='Reviewed exact canonical entry and its explicit authorship; retain original title variants',missing_abstract_reason=missing)
p=self.root/'review.json';p.write_text(json.dumps({'format':1,'source_cache_sha256':sha,'records':[row]}));return sha,p,hashlib.sha256(p.read_bytes()).hexdigest()
def test_reviewed_variant_keeps_primary_title_and_all_old_title_claims(self):
sha,p,h=self.review();out=self.root/'reviewed';r=collect(self.cache,sha,out,reviewed=p,reviewed_sha256=h)
row=json.loads((out/'www-1995-spring-poster.jsonl').read_text());self.assertEqual(row['title'],'Canonical full title')
self.assertEqual(row['metadata']['abstract_heading_title_raw'],'Same contribution');self.assertEqual(row['metadata']['author_index_titles_raw'],['Same contribution'])
self.assertEqual(len(row['metadata']['source_evidence']),3);self.assertEqual(r['reviewed_posters_sha256'],h)
self.assertEqual(row['external_id'],'www3:posters:01');self.assertEqual(row['status'],'accepted')
def test_canonical_byline_can_resolve_unlinked_author_index_without_guessing(self):
self.pages[SPRING+'posters/author.html']='<b>Doe, Jane</b><a href="#">Broken index link</a>'
sha,p,h=self.review();out=self.root/'reviewed';collect(self.cache,sha,out,reviewed=p,reviewed_sha256=h)
row=json.loads((out/'www-1995-spring-poster.jsonl').read_text());self.assertEqual(row['authors'],['Jane Doe','John Roe'])
self.assertEqual(row['metadata']['author_index_raw'],[]);self.assertEqual(row['metadata']['author_order'],'canonical_byline')
def test_reviewed_missing_abstract_is_explicit_partial_not_body_summary(self):
self.pages[SPRING+'posters/abstract.html']='<h3><a href="01/paper.html">Same contribution</a></h3><i>Author: Jane Doe</i><p>Keywords: web</p>'
sha,p,h=self.review(missing='Neither listing nor canonical page supplies an explicit abstract')
out=self.root/'reviewed';collect(self.cache,sha,out,reviewed=p,reviewed_sha256=h)
row=json.loads((out/'www-1995-spring-poster.jsonl').read_text());m=json.loads((out/'www-1995-spring-poster.manifest.json').read_text())
self.assertIsNone(row['abstract']);self.assertEqual((m['missing_abstract_count'],m['status']),(1,'partial'))
sha,p,h=self.review()
with self.assertRaisesRegex(ValueError,'Missing abstract'):collect(self.cache,sha,self.root/'bad',reviewed=p,reviewed_sha256=h)
self.assertFalse((self.root/'bad').exists())
def test_reviewed_names_must_be_in_byline_region_not_citations_or_contact_guess(self):
sha,p,h=self.review(authors=['Unrelated Person'],page='<h1>Canonical full title</h1><p>Jane Doe</p><h2>Abstract</h2><p>Unrelated Person cited here</p>')
with self.assertRaisesRegex(ValueError,'byline region'):collect(self.cache,sha,self.root/'bad',reviewed=p,reviewed_sha256=h)
sha,p,h=self.review(author_source='author_index',authors=['Contact Person'])
with self.assertRaisesRegex(ValueError,'author-index'):collect(self.cache,sha,self.root/'bad',reviewed=p,reviewed_sha256=h)
def test_review_hash_cache_binding_and_canonical_h1_are_all_required(self):
sha,p,h=self.review()
with self.assertRaisesRegex(ValueError,'checksum'):collect(self.cache,sha,self.root/'bad',reviewed=p,reviewed_sha256='0'*64)
d=json.loads(p.read_text());d['source_cache_sha256']='0'*64;p.write_text(json.dumps(d));h=hashlib.sha256(p.read_bytes()).hexdigest()
with self.assertRaisesRegex(ValueError,'binding'):collect(self.cache,sha,self.root/'bad',reviewed=p,reviewed_sha256=h)
d['source_cache_sha256']=sha;d['records'][0]['title']='Wrong title';p.write_text(json.dumps(d));h=hashlib.sha256(p.read_bytes()).hexdigest()
with self.assertRaisesRegex(ValueError,'canonical H1'):collect(self.cache,sha,self.root/'bad',reviewed=p,reviewed_sha256=h)
def test_unlisted_review_entry_and_changed_primary_digest_fail_closed(self):
sha,p,h=self.review();d=json.loads(p.read_text());d['records'][0]['individual_sha256']='0'*64;p.write_text(json.dumps(d));h=hashlib.sha256(p.read_bytes()).hexdigest()
with self.assertRaisesRegex(ValueError,'page checksum'):collect(self.cache,sha,self.root/'bad',reviewed=p,reviewed_sha256=h)
self.pages[SPRING+'posters/abstract.html']=self.pages[SPRING+'posters/abstract.html'].replace('01/paper.html','02/other.html')
self.pages[SPRING+'posters/author.html']=self.pages[SPRING+'posters/author.html'].replace('01/paper.html','02/other.html')
sha,p,h=self.review()
with self.assertRaisesRegex(ValueError,'outside abstract'):collect(self.cache,sha,self.root/'bad',reviewed=p,reviewed_sha256=h)