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3 Commits

Author SHA1 Message Date
codex-bot 5c78a36fd5 Scope chapter publication identities and test explicit work anchors
Metadata integrity checks / metadata (push) Successful in 2m20s
2026-11-10 00:04:35 +08:00
codex-bot 7facde6c94 Handle section front matter and preserve abstract paragraph boundaries
Metadata integrity checks / metadata (push) Failing after 2m3s
2026-11-10 00:00:30 +08:00
codex-bot c06981b244 Collect reviewed Springer postconference selected volumes
Metadata integrity checks / metadata (push) Failing after 2m4s
2026-11-09 23:51:25 +08:00
10 changed files with 443 additions and 1576 deletions
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@@ -12,7 +12,7 @@ jobs:
- name: Verify metadata storage and query commands
run: |
python3 -B - <<'PY'
import io, os, pathlib, re, subprocess, tarfile, tempfile, urllib.request
import gzip, io, json, os, pathlib, re, subprocess, tarfile, tempfile, urllib.request
sha = os.environ['ARCHIVE_SHA']
if not re.fullmatch(r'[0-9a-fA-F]{40,64}', sha):
raise SystemExit('Invalid source commit')
@@ -53,6 +53,18 @@ jobs:
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','aamas-proceedings','--year','2025','--snapshots',str(src/'tests/fixtures/aamas2025'),'--out',str(root/'installed-aamas2025')],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','iclr-archive','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','acl','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','springer-selected','--help'],cwd=outside,check=True)
springer = json.loads(gzip.decompress((src/'tests/fixtures/springer-aistats1993-fixture.json.gz').read_bytes()))
for group in ('toc','chapters'):
folder = root/'springer-snapshots'/group
folder.mkdir(parents=True)
for name, content in springer[group].items():
(folder/name).write_text(content)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','springer-selected','--toc-snapshots',str(root/'springer-snapshots/toc'),'--chapter-snapshots',str(root/'springer-snapshots/chapters'),'--out',str(root/'installed-springer')],cwd=outside,check=True)
springer_report = json.loads((root/'installed-springer/collection-report.json').read_bytes())
assert springer_report['records'] == 49 and not springer_report['database_written']
springer_manifest, = springer_report['files']
assert springer_manifest['status'] == 'partial' and springer_manifest['missing_abstract_count'] == 0
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','postgres','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','edition-tracks','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','joint-editions','--help'],cwd=outside,check=True)
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@@ -6,10 +6,10 @@ Paper Atlas 将 arXiv、AI 会议论文集及公开投稿决定整理到可追
项目仍在建设中。候选范围包含 43 个会议(含 ACM MM、MLSys),尚未完成全部历史数据和最终去重复核。实际进度以数据库、来源清单和覆盖报告为准,而不是仓库文件数量。
当前主动补漏从 **2020 年**起;2000 年起已发现的名单、缺口与待办保存在[补漏恢复清单](docs/coverage/backfill-handoff-2026-11-10.md),下次从这里接续。已有旧数据保留,范围排除不算补齐。
历史 ICLR 2014–2016 官方录用页由 `collect iclr-archive` 适配,保留主会/workshop及重复展示证据;运行和身份核验边界见 [历史档案说明](docs/coverage/iclr-archive-2014-2016.md)。
`collect springer-selected` 核验限定的会后选集,分开保存会议年份、出版年份及选集事件身份。目前支持 AISTATS 1993 对应的 1994 年出版选集,原始会议决定仍须单独核查;配置、证据和恢复见 [会后选集说明](docs/springer-selected-volumes.md)。
## 项目结构
ACL 1978 的年会与 TINLAP-2 来源关系按精确卷适配,保留原系列和不明逐篇角色;1965 的替代关系不转成全局别名。来源、排除条目和恢复边界见 [ACL 早期来源核查](docs/coverage/acl-early-sources-2026-11-09.md)。
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@@ -1,7 +1,5 @@
# 会议覆盖与公开决定核查
**当前工作范围:2020 年起主动补漏。** 2000 年起已发现资料保留,恢复工作从 [补漏范围与恢复清单(2026-11-10)](backfill-handoff-2026-11-10.md) 开始;下文旧日期快照不改写,较早年份排除不算补齐。
这是 2026-11-08 的首份核查基线,**完整逐年政策普查和最终去重仍未完成**。收录 43 个目标,不能把“有记录”当作“完整覆盖”。结构化清单见 [inventory-2026-11-08.json](inventory-2026-11-08.json)。清单中的 `policy_checks` 均限定所列年份和轨道;空数组表示尚未核实,绝不表示没有公开拒稿。
## 快照与复核
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@@ -1,52 +0,0 @@
# 补漏范围与恢复清单(2026-11-10)
用户确定:**后续主动补漏从 2020 年起**。2000 年起已经发现的名单、缺口、资料组合和身份核查记录保留在项目中,供下次接着做;已有旧数据继续保留。停止补采的年份标为范围外或延期,不算作已补齐。
本页是下一次工作的入口,结构化记录见 [backfill-handoff-2026-11-10.json](backfill-handoff-2026-11-10.json)。它保存 43 个会议的 2000–2026 已观察年份、缺年、官方目录文件入口、近期待办与恢复证据。旧的日期快照不改写,也不能当实时数据库。
## 当前范围和年份差集
依据生产只读快照 `2026-11-09 16:26:41.688509+00:00`,原全历史口径为 1266 个目标年份槽位:1208 已观察、43 个历史缺年、14 个 2026 缺年,以及 1 个 SysML 2018 非存档例外。原 135 个历史缺口中有 92 个通过数据补入解决;其余 43 个现在停止补采,不能因此宣称全部解决。
- **2020–2025**:没有整年完全缺记录的目标槽位,但逐篇、track、摘要、公开负面决定仍不完整。
- **2026**:NeurIPS、ECCV、RecSys、CIKM、ICDM、SDM、IROS、RSS、CoRL、ICAPS、AAMAS、ICASSP、ISMIR、ACM MM,共 14 个槽位。须逐个核查是否已经公开出版;不能将尚未发布的资料说成漏采。
- **2000–2019 延期线索**:WWW 2000、ICAPS 2001 两个整年缺口;官方历届记录分别见 [WWW](www-editions-2026-11-08.json)、[ICAPS](icaps-editions-2026-11-08.json)。SysML 2018 是非存档首届,见 [MLSys](mlsys-editions-2026-11-08.json),不能制造正式出版记录。
- **2000 年前**:剩余 41 个历史缺年停止补采。旧来源文件继续保留作证据,不再作为当前工作队列。
以上只判断目标会议年份是否至少有一条投稿记录,绝不等于目录完整、独立论文数量或最终去重验收。
## 近期资料与恢复位置
服务器采集根目录为 `/data/paper-index/collected`,本地证据备份为 `/Users/zzyang/Documents/Codex/2026-11-06/paper-index`。这些目录提供大体积原始文件,仓库 JSON 提供路径、状态和可用哈希;恢复前先验证文件存在、哈希和生产实际状态。
| 资料 | 当前状态 | 下一步与证据入口 |
| --- | --- | --- |
| AAMAS 2026 | 官方目录 643 条,3 个 keynote 排除;640 个非 keynote 中含 1 个明确撤稿。尚未导入 | `aamas2026-primary-evidence-v1/` 保存官方 HTML、回执、逐项目录、审计和校验清单。八个标题差异/撤稿前缀条目需核查。先扩展正式 collector 并远程验证,再做新 PostgreSQL 身份预检。 |
| CVPR 2026 Findings | 941 条摘要已核验,尚未导入 | `cvf-2026-verified/recovery-audit.json`;原 404 与 RVLF/FVLF 路径更正证据保留。先核对 manifests、track 和实体关系。 |
| AAMAS 2025 | 476 个非 keynote 来源中,240 已验收、236 待身份核查 | `aamas2025-import225-v1/` 与 `aamas2025-import15-v1/` 是已消费批次,禁止重放。15 条最近验收报告哈希见 JSON。余下资料从当前身份候选与新只读基线继续。 |
| RSS 2025 | 163 条目录中 162 已验收,`2025/p117` 待核查 | 保留 spinal/RMCC 关系问题;查看工作状态键 `rss2025_held7_primary_evidence_v1`,不能重跑已消费的 6/88/54/14 批次。 |
| 近期公开负面决定首批 | 1625 条已验收:1624 rejected、1 withdrawn | `public-negative-postgresql-import-postcheck-v1.json`;仅该批次验收,不是公开拒稿全集,不要重放。 |
AAMAS 2026 官方目录分区:research 338、extended abstracts 185、AAAI 19、Blue Sky 17、doctoral 34、demo 44、JAAMAS 3,另有 keynote 3。JAAMAS 是期刊展示关系,不能凭目录再造一次独立审稿录用。官方撤稿条目在 research 分区,不能把全目录都标为当前 accepted。
AAAI 转投政策有年份冲突:[详细征稿页](https://cyprusconferences.org/aamas2026/call-for-papers-aaai-track/) 指 AAAI-26 rejected,[总览](https://cyprusconferences.org/aamas2026/calls/) 写 AAAI-25。保留两份证据;19 个 AAAI track 条目不能直接转成 19 条有原始 note 的拒稿决定。原投稿 ID、逐篇决定和版本关系仍需核实。
## 2000–2019 已发现但延期的身份与名单工作
- **AAMAS 2012**:官方 334 条,319 已独立验收、15 个身份条目保留待查。验收报告 `aamas2012-import-v1/postgresql-postcheck-v1.json`,哈希在 JSON;已验收 319 条及被替代的 316 条计划均不得重放。来源布局与用法见 [AAMAS 适配说明](../aamas-proceedings.md)。
- **UAI 2008**:官方 programme 与归档资料确认了四篇独立论文,但部分原始 DBLP 键的标题、作者、页码、出版链接对应仍有冲突。JSON 保留四组候选、arXiv ID、官方题名及归档报告哈希。之前仅根据页码推断题名/作者错误的结论已撤回,未应用纠正;恢复时不得据此覆盖或合并。
- **其他名单**:本目录全部 `*-editions-2026-11-08.json` 保留各会议官方年份及来源;[历史缺口](historical-gaps-2026-11-09.md)、[来源候选](historical-source-candidates-2026-11-09.json)、[来源范围](historical-source-scope-2026-11-09.md)、[主系列](historical-primary-series-2026-11-09.md)、[前身会议](historical-predecessors-2026-11-09.md)、[ICLR 档案](iclr-archive-2014-2016.md)继续留档。这些旧报告的“缺失”可能已被后续导入解决,恢复时必须对照当前状态,不能直接当可执行队列。
## 公开拒稿资料不能遗漏
结构化清单保留最近已查的政策 URL、限定年份和可用性结论。优先继续 UAI 2024–2026 的 opt-in 公开拒稿来源、EMNLP 2023 的公开集合范围及其他目标的逐年核查;平台使用 OpenReview 不能证明 rejected 公开。访问受限如实记录,不绕过 Challenge。
保留 rejected、desk rejected、withdrawn、retracted、resubmit 的区别;评审建议不等于最终决定。COLM 2026 的不公开政策只适用于已核实年份,不能推广到其他会议。PaperCopilot 与原 OpenReview、镜像间有重叠,候选计数不能相加。论文先被 A 拒绝再被 B 录用时,两次投稿、决定、来源与证据全部保留。
## 下次启动顺序
1. 读取本页和 JSON,再核实服务器工作状态、明确的 systemd invocation 与终态报告。权威工作状态 `/Users/zzyang/Documents/Codex/2026-11-06/paper-index/work-state.json` 中部分旧字段会过期;以最新验收和实际查询为准。
2. 当前主动范围为 2020 起,2000–2019 只恢复线索,不自动启动其采集。先检查新来源是否已导入,验收过的队列禁止重放。
3. 使用现有 `foundry-postgres` 的 `foundry_data.research`。当前已验证 writer 为提交 `714f745bd5c3fbc742be1efae0b31ab37a55e21f` 的固定 release;恢复时重新确认,不使用旧 `/data/paper-index/code` 替代。服务配置仅由服务器受保护文件读取,不复制密码。
4. 对待导入资料做新只读身份预检,处理稳定标识、短标题、作者/版本差异、track 与跨会历史,再生成小范围增量队列。每批独立验收,SQLite 只读备份保持保护。
5. 编译、测试或 wheel 构建仅在已确认 `ces-control:host` runner 执行。代码按工作分支交付 PR,等待用户手动合并。范围内导入结束后仍须全库去重、近似标题/作者冲突、来源-年份-track、摘要、约束、实际全文查询验收;不能用单批导入或 CI 成功替代。
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# 会后选集的元数据采集
`collect springer-selected` 读取已冻结、带 HTTP 回执的公开 HTML,不访问 PDF、不写业务库。目前仅支持核验过的 *Selecting Models from Data: Artificial Intelligence and Statistics IV*,书籍 DOI 为 `10.1007/978-1-4612-2660-4`。增加其他卷前必须另行核对会议关系、目录、年份和字段格式。
[会议官方旧站](https://www.gatsby.ucl.ac.uk/aistats/workshops.html)区分现场分发的 Preliminary Papers 与之后修订、再次评审的选集。[出版社卷说明](https://link.springer.com/book/10.1007/978-1-4612-2660-4)将本书关联到 1993 年 1 月的第四届 workshop,书籍出版年份为 1994。三页目录共有 49 个章节 DOI;分区 Front Matter 不作为章节论文导入。
规范记录保留:
- 会议年份 1993、独立 track `selected_volume` 与事件标识 `aistats-1993-selected-volume-1994`;出版年份单独记为 1994。
- 章节本身的 DOI、作者原始引用写法及顺序、姓名首字母、标题、摘要、页码和逐页原始证据。不扩写作者首字母。
- 明确提供本章 `publication_doi` 投稿出版标识,不把它转移到旧的原始会议评审记录,也不因短标题相同而强制合并实体。
- `springer_selected_volume:publication_format` 标签与独立来源 namespace。
- `accepted` 仅表示章节已列入这本出版选集,原始 1993 投稿评审决定、决定日期和全部录用清单均未知。后续原会议 main、拒稿或撤稿证据可以独立保留。
不能据此宣称会议全部录用、全部投稿或公开拒稿覆盖完整,也不能把出版社机器添加的关键词视为作者标签。未命中选集不等于被拒。
## 按需运行与恢复
输入分别是卷目录/旧站说明和章节页的快照目录。每个目录的 `receipts.json` 包含 `responses` 列表,每条保留 `url`、`final_url`、`file`、`http_status`、`headers`、`bytes`、`sha256`、`at`。需要三页目录、官方旧站说明及全部 49 个章节页面。
```sh
paper-atlas collect springer-selected \
--toc-snapshots /data/paper-index/collected/aistats1993-book-evidence-v1 \
--chapter-snapshots /data/paper-index/collected/aistats1993-chapter-evidence-v1 \
--out /data/paper-index/collected/aistats1993-source-v1
```
采集器验证回执和内容哈希、文件路径、HTTP 类型、目录/章节 DOI 和标题、作者格式、出版年份及页码。Springer 对公开元数据返回的同路径 `cookies_not_supported` 诊断参数会原样保留;不接受其他域、路径、分页变化或未知查询参数。官方旧站说明固定哈希为 `6db205b9dbc82b4a096556efd2aa67e065cad8e0bd6351176b1962ffd1fca179`,变化时须重新审核。
全部文件先核验,输出使用排他锁和暂存目录,完成报告最后发布。已有输出拒绝覆盖;发现不完整或已消费文件,应先查运行状态与报告,另建明确版本目录,不能重放生产导入。
输出 JSONL 配套 manifest 始终为 `partial`。收集完成后还必须做 PostgreSQL 稳定标识/标题/作者身份预检、排除已导入记录、准备限定增量文件、保存旧数据保护基线、原生导入和独立验收。49 条来源不代表 49 个新增论文实体,全部来源处理后仍须全库去重审计。
## 固定测试资料
`tests/fixtures/springer-aistats1993-fixture.json.gz` 保存 4 份范围/目录 HTML、49 份章节 HTML、原始请求回执及独立原始字段审计的预期元数据,SHA256 为 `94028fd37080f9d8027e5790e379cc151ee6eab17ed0d1dcc0f59e6e75f9d4d0`。摘要按 HTML 段落边界分隔;未修改原始 HTML 或回执。它是压缩的公开元数据测试资料,不包含论文 PDF。测试覆盖全部真实章节字段、缺失和漂移输入、来源安全边界、幂等导入及旧拒稿历史保留。构建和测试只在已授权远程 runner 执行。
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@@ -13,6 +13,7 @@ COMMANDS = {
('download',): ('paper_atlas.io.snapshots', {}, '下载并校验固定版本快照'),
('collect','pmlr'): ('paper_atlas.collectors.pmlr', {}, 'PMLR 官方元数据'),
('collect','acl'): ('paper_atlas.collectors.acl', {}, 'ACL Anthology XML'),
('collect','springer-selected'): ('paper_atlas.collectors.springer_selected', {}, '核验限定的会后选集章节与原会议关系'),
('collect','iclr-archive'): ('paper_atlas.collectors.iclr_archive', {}, '核对ICLR 2014–2016官方历史录用档案'),
('collect','iclr-program'): ('paper_atlas.collectors.iclr', {}, 'ICLR 官方公开程序'),
('collect','iclr-snapshot'): ('paper_atlas.collectors.openreview', {}, 'ICLR 公开投稿与决定快照'),
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"""Reviewed postconference selected volumes from frozen public HTML metadata."""
import argparse
from collections import defaultdict
import fcntl
import hashlib
import json
from pathlib import Path
import re
import tempfile
from urllib.parse import parse_qs, urlsplit
from paper_atlas.db.submissions import timestamp
from paper_atlas.io.html import Document, clean
SOURCE = 'springer_selected_volume'
BOOK = '10.1007/978-1-4612-2660-4'
BOOK_URL = 'https://link.springer.com/book/'+BOOK
HISTORY_URL = 'https://www.gatsby.ucl.ac.uk/aistats/workshops.html'
HISTORY_SHA = '6db205b9dbc82b4a096556efd2aa67e065cad8e0bd6351176b1962ffd1fca179'
SCOPE = {
'venue': 'AISTATS', 'year': 1993, 'track': 'selected_volume',
'event_key': 'aistats-1993-selected-volume-1994',
'publication_year': 1994, 'book_doi': BOOK,
'book_title': 'Selecting Models from Data', 'expected_chapters': 49,
'relationship': 'Selected workshop papers were revised and rereviewed for later publication; this is not the original complete workshop decision list.',
}
def snapshot_index(root):
root = Path(root).resolve()
receipts = json.loads((root/'receipts.json').read_bytes())['responses']
index = {}
for receipt in receipts:
url = receipt['url']
if url in index:
raise ValueError('Duplicate snapshot URL')
index[url] = (root, receipt)
return index
def read_page(index, url):
if url not in index:
raise ValueError('Missing required public HTML snapshot: '+url)
root, receipt = index[url]
filename = Path(receipt['file'])
path = root/filename
content_type = {k.lower():v for k,v in receipt.get('headers', {}).items()}.get('content-type', '')
requested, final = urlsplit(url), urlsplit(receipt.get('final_url', ''))
query = parse_qs(final.query, keep_blank_values=True)
original_query = parse_qs(requested.query, keep_blank_values=True)
# Springer returns the public metadata with an explicit cookie diagnostic.
# Retain that final URL verbatim; accept no other redirect or changed page.
if query != original_query and requested.netloc == 'link.springer.com':
if (query.pop('error', None) != ['cookies_not_supported']
or not re.fullmatch(r'[0-9a-f-]{36}', ''.join(query.pop('code', [])))):
raise ValueError('Unreviewed Springer redirect query')
if (filename.is_absolute() or '..' in filename.parts or not path.resolve().is_relative_to(root)
or receipt.get('http_status') != 200
or (final.scheme, final.netloc, final.path) != (requested.scheme, requested.netloc, requested.path)
or final.fragment or query != original_query
or 'text/html' not in content_type.lower()):
raise ValueError('Unsafe, redirected or unsuccessful public HTML snapshot')
raw = path.read_bytes()
digest = hashlib.sha256(raw).hexdigest()
if len(raw) > 2_000_000 or len(raw) != receipt['bytes'] or digest != receipt['sha256']:
raise ValueError('Snapshot checksum or size differs')
evidence = {'url':url, 'sha256':digest, 'bytes':len(raw),
'file':'evidence/'+digest+'.html', 'http_status':200,
'observed_at':timestamp(receipt['at']), 'response_receipt':receipt}
return raw, evidence
def parse_toc(html, *, excluded_materials=None):
entries = {}
for node in Document(html).root.walk():
if node.tag != 'li' or node.attrs.get('data-test') != 'chapter':
continue
links = [n for n in node.walk() if n.tag == 'a' and re.fullmatch(
r'/chapter/'+re.escape(BOOK)+r'_[1-9]\d*', n.attrs.get('href', ''))]
if not links:
headings = [clean(n.text()) for n in node.walk() if n.tag in ('h3','h4')]
frontmatter = [n.attrs.get('href','') for n in node.walk()
if n.tag == 'a' and n.attrs.get('data-test') == 'front-matter-pdf']
if headings == ['Front Matter'] and len(frontmatter) == 1:
if excluded_materials is not None:
excluded_materials.append({'title':'Front Matter', 'url':frontmatter[0],
'reason':'Section front matter without a chapter DOI; not an authored chapter.'})
continue
if len(links) != 1:
raise ValueError('Chapter entry lacks one reviewed-book DOI')
link, = links
doi = link.attrs['href'].removeprefix('/chapter/')
if doi in entries or not clean(link.text()):
raise ValueError('Duplicate DOI or missing chapter title')
entries[doi] = clean(link.text())
return entries
def parse_chapter(html, doi):
nodes = list(Document(html).root.walk())
meta = defaultdict(list)
for node in nodes:
if node.tag == 'meta' and node.attrs.get('name', '').startswith('citation_'):
meta[node.attrs['name']].append(node.attrs.get('content', ''))
def one(key):
values = meta[key]
if len(values) != 1 or not values[0]:
raise ValueError('Missing or ambiguous citation field: '+key)
return values[0]
if (one('citation_doi') != doi or one('citation_inbook_title') != SCOPE['book_title']
or one('citation_publication_date') != str(SCOPE['publication_year'])):
raise ValueError('Chapter DOI, book or publication year differs from reviewed scope')
raw_authors = meta['citation_author']
if not raw_authors:
raise ValueError('Missing named chapter authors')
authors = []
for raw in raw_authors:
if raw.count(',') != 1:
raise ValueError('Unreviewed citation author format')
family, given = [clean(s) for s in raw.split(',', 1)]
if not family or not given:
raise ValueError('Incomplete citation author')
authors.append({'given':given, 'family':family})
abstract_nodes = [n for n in nodes if n.attrs.get('id') == 'Abs1-content']
if len(abstract_nodes) > 1:
raise ValueError('Ambiguous abstract section')
abstract = clean(abstract_nodes[0].text()) if abstract_nodes else None
first, last = one('citation_firstpage'), one('citation_lastpage')
if not first.isdigit() or not last.isdigit() or int(first) > int(last):
raise ValueError('Invalid chapter pages')
return {'doi':doi, 'title':one('citation_title'), 'authors':authors,
'authors_citation_raw':list(raw_authors), 'abstract':abstract or None,
'first_page':first, 'last_page':last}
def record_for(chapter, evidence, scope_evidence):
return {
'source':SOURCE, 'external_id':chapter['doi'],
'url':'https://link.springer.com/chapter/'+chapter['doi'],
'title':chapter['title'], 'abstract':chapter['abstract'], 'authors':chapter['authors'],
'identifiers':{'doi':chapter['doi']},
'submission_identifiers':[{'scheme':'publication_doi','value':chapter['doi']}],
**{k:SCOPE[k] for k in ('venue','year','track','event_key')},
'status':'accepted', 'observed_at':evidence['observed_at'],
'raw_decision':'listed in the 1994 selected postconference volume; original 1993 review decision not supplied',
'tags':[{'namespace':SOURCE+':publication_format','value':'selected_volume_chapter'}],
'metadata':{
'publication_format':'selected_volume_chapter', 'bibliographic_year':1994,
'related_workshop_year':1993, 'book_doi':BOOK, 'book_title':SCOPE['book_title'],
'year_basis':'Reviewed workshop year; bibliographic publication year is separately retained.',
'first_page':chapter['first_page'], 'last_page':chapter['last_page'],
'authors_citation_raw':chapter['authors_citation_raw'],
'publication_evidence':'Published selected-volume chapter, not an original workshop decision note.',
'scope_relationship':SCOPE['relationship'], 'decision_date_precision':'not_supplied',
'source_evidence':evidence, 'scope_evidence':scope_evidence,
},
}
def collect(out, *, toc_snapshots, chapter_snapshots):
toc_index, chapter_index = snapshot_index(toc_snapshots), snapshot_index(chapter_snapshots)
frozen = {}
def read(index, url):
raw, evidence = read_page(index, url)
frozen[evidence['file']] = raw
return raw.decode('utf-8'), evidence
history, history_evidence = read(toc_index, HISTORY_URL)
if hashlib.sha256(history.encode()).hexdigest() != HISTORY_SHA:
raise ValueError('Reviewed selected-volume relationship evidence changed')
scope_evidence = [history_evidence]
titles, excluded = {}, []
for page in range(1, 4):
html, evidence = read(toc_index, BOOK_URL+('?page='+str(page) if page > 1 else ''))
scope_evidence.append(evidence)
entries = parse_toc(html, excluded_materials=excluded)
if titles.keys() & entries.keys():
raise ValueError('DOI repeated across TOC pages')
titles.update(entries)
expected = {BOOK+'_'+str(i) for i in range(1, 50)}
if titles.keys() != expected:
raise ValueError('Reviewed 49-chapter inventory changed')
chapter_urls = {'https://link.springer.com/chapter/'+doi for doi in expected}
if chapter_index.keys() != chapter_urls:
raise ValueError('Missing or extraneous chapter snapshot')
records = []
for doi in sorted(expected, key=lambda s:int(s.rsplit('_',1)[1])):
html, evidence = read(chapter_index, 'https://link.springer.com/chapter/'+doi)
chapter = parse_chapter(html, doi)
if chapter['title'] != titles[doi]:
raise ValueError('Chapter title disagrees with official TOC')
records.append(record_for(chapter, evidence, scope_evidence))
out = Path(out)
out.mkdir(parents=True, exist_ok=True)
with (out/'springer-selected.collect.lock').open('a') as lock:
fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB)
if any(p.name != 'springer-selected.collect.lock' for p in out.iterdir()):
raise FileExistsError('Existing output must be inspected, not overwritten')
with tempfile.TemporaryDirectory(prefix='.springer-selected-', dir=out) as temporary:
stage = Path(temporary)
(stage/'evidence').mkdir()
for filename, raw in frozen.items():
(stage/filename).write_bytes(raw)
path = stage/'springer-aistats-1993-selected-volume.jsonl'
path.write_text(''.join(json.dumps(r,ensure_ascii=False)+'\n' for r in records))
manifest = {'source':SOURCE, 'parser_version':1,
**{k:SCOPE[k] for k in ('venue','year','track','event_key')},
'count':len(records), 'file':str(out/path.name),
'file_sha256':hashlib.sha256(path.read_bytes()).hexdigest(),
'list_url':BOOK_URL, 'status':'partial',
'excluded_materials':excluded,
'missing_abstract_count':sum(not r['abstract'] for r in records)}
path.with_suffix('.manifest.json').write_text(json.dumps(manifest,indent=2)+'\n')
report = {'status':'collected_pending_identity_review', 'records':len(records),
'files':[manifest], 'reviewed_scope':SCOPE, 'database_written':False,
'pdfs_downloaded':False, 'scope_evidence':scope_evidence}
(stage/'collection-report.json').write_text(json.dumps(report,ensure_ascii=False,indent=2)+'\n')
for item in stage.iterdir():
if item.name != 'collection-report.json':
item.replace(out/item.name)
(stage/'collection-report.json').replace(out/'collection-report.json')
return report
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog)
parser.add_argument('--toc-snapshots', required=True)
parser.add_argument('--chapter-snapshots', required=True)
parser.add_argument('--out', required=True)
args = parser.parse_args(argv)
print(json.dumps(collect(args.out, toc_snapshots=args.toc_snapshots,
chapter_snapshots=args.chapter_snapshots),ensure_ascii=False))
Binary file not shown.
+160
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"""Real 49-chapter snapshots compared with a separately frozen metadata audit."""
import copy
import gzip
import hashlib
import json
from pathlib import Path
import sqlite3
import tempfile
import unittest
from paper_atlas.collectors.springer_selected import (
BOOK, SOURCE, collect, parse_chapter, parse_toc, read_page, snapshot_index,
)
from paper_atlas.db.store import Store
from paper_atlas.ingestion.records import ingest_file
FIXTURE = Path(__file__).parent/'fixtures/springer-aistats1993-fixture.json.gz'
class SpringerSelectedTests(unittest.TestCase):
@classmethod
def setUpClass(cls):
raw = FIXTURE.read_bytes()
if hashlib.sha256(raw).hexdigest() != '94028fd37080f9d8027e5790e379cc151ee6eab17ed0d1dcc0f59e6e75f9d4d0':
raise AssertionError('Fixed source fixture differs')
cls.fixture = json.loads(gzip.decompress(raw))
def snapshots(self, root):
for group in ['toc','chapters']:
folder = root/group
folder.mkdir()
for name, text in self.fixture[group].items():
(folder/name).write_text(text)
return {'toc_snapshots':root/'toc','chapter_snapshots':root/'chapters'}
def test_all49_original_fields_against_independent_audit(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
report = collect(root/'out', **self.snapshots(root))
manifest, = report['files']
rows = [json.loads(s) for s in Path(manifest['file']).read_text().splitlines()]
self.assertEqual(len(rows), 49)
self.assertEqual(manifest['status'], 'partial')
self.assertEqual(manifest['missing_abstract_count'], 0)
self.assertTrue(manifest['excluded_materials'])
self.assertTrue(all(x['title'] == 'Front Matter' for x in manifest['excluded_materials']))
for row, expected in zip(rows, self.fixture['expected']):
for field in ['title','abstract']:
self.assertEqual(row[field], expected[field])
self.assertEqual(row['identifiers'], {'doi':expected['doi']})
self.assertEqual(row['submission_identifiers'], [{'scheme':'publication_doi','value':expected['doi']}])
self.assertEqual(row['external_id'], expected['doi'])
self.assertEqual(row['metadata']['authors_citation_raw'], expected['authors_citation_raw'])
self.assertEqual(row['authors'], [{'family':s.split(',',1)[0].strip(), 'given':s.split(',',1)[1].strip()} for s in expected['authors_citation_raw']])
self.assertEqual(row['metadata']['first_page'], expected['first_page'])
self.assertEqual(row['metadata']['last_page'], expected['last_page'])
self.assertEqual((row['year'],row['metadata']['bibliographic_year']), (1993,1994))
self.assertEqual(row['track'], 'selected_volume')
self.assertEqual(row['event_key'], 'aistats-1993-selected-volume-1994')
self.assertNotIn('decision_date', row)
self.assertIn('original 1993 review decision not supplied', row['raw_decision'])
for e in [row['metadata']['source_evidence'], *row['metadata']['scope_evidence']]:
self.assertEqual(hashlib.sha256((root/'out'/e['file']).read_bytes()).hexdigest(), e['sha256'])
self.assertFalse(report['database_written'])
with self.assertRaises(FileExistsError):
collect(root/'out', toc_snapshots=root/'toc', chapter_snapshots=root/'chapters')
def test_native_history_namespaces_and_idempotent_import(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
report = collect(root/'out', **self.snapshots(root))
manifest, = report['files']
first = json.loads(Path(manifest['file']).read_text().splitlines()[0])
db = root/'sample.sqlite'
store = Store(db)
pid, rid = store.record('prior_public','earlier','https://example.org/earlier',first['title'],first['abstract'],first['authors'])
store.decision(pid,rid,'AISTATS',1993,'main','earlier','https://example.org/earlier','rejected','original public rejection')
# Explicitly verified work identity; the short title alone must not
# force a merge or attach this publication DOI to the old attempt.
store.conn.execute('INSERT INTO identifiers VALUES(?,?,?)', ('doi',first['identifiers']['doi'],pid))
store.conn.commit()
old = store.conn.execute('SELECT * FROM decisions').fetchall()
store.conn.close()
ingest_file(db, manifest['file'])
ingest_file(db, manifest['file'])
with sqlite3.connect(db) as c:
self.assertEqual(c.execute('SELECT * FROM decisions WHERE status=\'rejected\'').fetchall(), [tuple(r) for r in old])
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0], 49)
self.assertEqual(c.execute('SELECT count(*) FROM submissions').fetchone()[0], 50)
self.assertEqual(c.execute('SELECT count(*) FROM decisions').fetchone()[0], 50)
self.assertEqual(c.execute('SELECT e.year,e.track,e.event_key FROM editions e ORDER BY e.id').fetchall(), [(1993,'main',''),(1993,'selected_volume','aistats-1993-selected-volume-1994')])
self.assertEqual(c.execute('SELECT count(*) FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE t.namespace=?', (SOURCE+':publication_format',)).fetchone()[0], 49)
self.assertEqual(c.execute('SELECT count(*) FROM submission_identifiers WHERE scheme=\'publication_doi\'').fetchone()[0], 49)
self.assertIsNone(c.execute("SELECT 1 FROM submission_identifiers si JOIN submissions s ON s.id=si.submission_id JOIN editions e ON e.id=s.edition_id WHERE e.track='main'").fetchone())
def test_short_unanchored_title_keeps_identity_unconfirmed(self):
with tempfile.TemporaryDirectory() as tmp:
store = Store(Path(tmp)/'identity.sqlite')
title = 'Statistical strategy: step 1'
authors = [{'given':'D. J.','family':'Hand'}]
old, _ = store.record('prior_public','earlier','https://example.org/old',title,'Same abstract',authors)
new, _ = store.record(SOURCE,BOOK+'_1','https://link.springer.com/chapter/'+BOOK+'_1',title,'Same abstract',authors,{'doi':BOOK+'_1'})
self.assertNotEqual(old, new)
self.assertEqual(store.conn.execute('SELECT count(*) FROM match_candidates WHERE method=\'exact_title_unconfirmed\'').fetchone()[0], 1)
store.conn.close()
def test_receipt_hash_path_redirect_and_content_type_guards(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
self.snapshots(root)
index = snapshot_index(root/'chapters')
url = 'https://link.springer.com/chapter/'+BOOK+'_1'
self.assertTrue(read_page(index,url)[0])
for key, value in [('sha256','0'*64),('file','../escape.html'),('final_url','https://example.org/chapter'),('http_status',403),('headers',{'Content-Type':'application/pdf'})]:
changed = copy.deepcopy(index)
changed[url][1][key] = value
with self.subTest(key=key), self.assertRaises((ValueError,KeyError)):
read_page(changed,url)
changed = copy.deepcopy(index)
changed[url][1]['final_url'] = url+'?page=2'
with self.assertRaises(ValueError):
read_page(changed,url)
def test_missing_or_duplicate_snapshot_stops_collection(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
args = self.snapshots(root)
path = root/'chapters/receipts.json'
d = json.loads(path.read_bytes())
original = copy.deepcopy(d)
d['responses'].pop()
path.write_text(json.dumps(d))
with self.assertRaises(ValueError):
collect(root/'out', **args)
self.assertFalse((root/'out').exists())
original['responses'].append(original['responses'][0])
path.write_text(json.dumps(original))
with self.assertRaises(ValueError):
snapshot_index(root/'chapters')
def test_book_doi_year_and_duplicate_citation_fields_reject_drift(self):
html = self.fixture['chapters']['chapter-01.html']
for key, value in [('citation_doi',BOOK+'_2'),('citation_inbook_title','Another Book'),('citation_publication_date','1993')]:
import re
changed, count = re.subn(r'(<meta[^>]*name="'+key+r'"[^>]*content=")[^"]*', lambda m:m[1]+value, html)
self.assertEqual(count, 1)
with self.subTest(key=key), self.assertRaises(ValueError):
parse_chapter(changed, BOOK+'_1')
with self.assertRaises(ValueError):
parse_chapter(html+'<meta name="citation_doi" content="'+BOOK+'_1">', BOOK+'_1')
def test_missing_abstract_is_explicit_and_does_not_use_other_page_text(self):
html = self.fixture['chapters']['chapter-01.html'].replace('id="Abs1-content"','id="not-an-abstract"')
self.assertIsNone(parse_chapter(html, BOOK+'_1')['abstract'])
def test_toc_ignores_frontmatter_but_rejects_duplicate_publications(self):
html = self.fixture['toc']['springer-toc1.html']
self.assertEqual(len(parse_toc(html)), 17)
with self.assertRaises(ValueError):
parse_toc(html+html)