Compare commits

...

6 Commits

Author SHA1 Message Date
codex-bot 5c78a36fd5 Scope chapter publication identities and test explicit work anchors
Metadata integrity checks / metadata (push) Successful in 2m20s
2026-11-10 00:04:35 +08:00
codex-bot 7facde6c94 Handle section front matter and preserve abstract paragraph boundaries
Metadata integrity checks / metadata (push) Failing after 2m3s
2026-11-10 00:00:30 +08:00
codex-bot c06981b244 Collect reviewed Springer postconference selected volumes
Metadata integrity checks / metadata (push) Failing after 2m4s
2026-11-09 23:51:25 +08:00
Zayden-Jung b226b3b98b Merge pull request '限定ACL1978与TINLAP卷的来源关系及非论文条目' (#42) from codex/acl-early into main
Metadata integrity checks / metadata (push) Successful in 2m18s
Reviewed-on: #42
2026-11-09 13:42:18 +00:00
Zayden-Jung 05ada8daf8 Merge pull request '支持 AAMAS 2025 官方出版目录元数据采集' (#44) from codex/aamas2025 into main
Metadata integrity checks / metadata (push) Successful in 3m20s
Reviewed-on: #44
2026-11-09 13:42:00 +00:00
codex-bot 443a79dce2 Preserve edition-specific ACL and TINLAP 1978 source evidence
Metadata integrity checks / metadata (push) Successful in 2m6s
2026-11-09 17:20:27 +08:00
12 changed files with 945 additions and 4 deletions
+14 -1
View File
@@ -12,7 +12,7 @@ jobs:
- name: Verify metadata storage and query commands
run: |
python3 -B - <<'PY'
import io, os, pathlib, re, subprocess, tarfile, tempfile, urllib.request
import gzip, io, json, os, pathlib, re, subprocess, tarfile, tempfile, urllib.request
sha = os.environ['ARCHIVE_SHA']
if not re.fullmatch(r'[0-9a-fA-F]{40,64}', sha):
raise SystemExit('Invalid source commit')
@@ -52,6 +52,19 @@ jobs:
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','aamas-proceedings','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','aamas-proceedings','--year','2025','--snapshots',str(src/'tests/fixtures/aamas2025'),'--out',str(root/'installed-aamas2025')],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','iclr-archive','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','acl','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','springer-selected','--help'],cwd=outside,check=True)
springer = json.loads(gzip.decompress((src/'tests/fixtures/springer-aistats1993-fixture.json.gz').read_bytes()))
for group in ('toc','chapters'):
folder = root/'springer-snapshots'/group
folder.mkdir(parents=True)
for name, content in springer[group].items():
(folder/name).write_text(content)
subprocess.run([python,'-I','-B','-m','paper_atlas','collect','springer-selected','--toc-snapshots',str(root/'springer-snapshots/toc'),'--chapter-snapshots',str(root/'springer-snapshots/chapters'),'--out',str(root/'installed-springer')],cwd=outside,check=True)
springer_report = json.loads((root/'installed-springer/collection-report.json').read_bytes())
assert springer_report['records'] == 49 and not springer_report['database_written']
springer_manifest, = springer_report['files']
assert springer_manifest['status'] == 'partial' and springer_manifest['missing_abstract_count'] == 0
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','postgres','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','edition-tracks','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','joint-editions','--help'],cwd=outside,check=True)
+4
View File
@@ -8,8 +8,12 @@ Paper Atlas 将 arXiv、AI 会议论文集及公开投稿决定整理到可追
历史 ICLR 2014–2016 官方录用页由 `collect iclr-archive` 适配,保留主会/workshop及重复展示证据;运行和身份核验边界见 [历史档案说明](docs/coverage/iclr-archive-2014-2016.md)。
`collect springer-selected` 核验限定的会后选集,分开保存会议年份、出版年份及选集事件身份。目前支持 AISTATS 1993 对应的 1994 年出版选集,原始会议决定仍须单独核查;配置、证据和恢复见 [会后选集说明](docs/springer-selected-volumes.md)。
## 项目结构
ACL 1978 的年会与 TINLAP-2 来源关系按精确卷适配,保留原系列和不明逐篇角色;1965 的替代关系不转成全局别名。来源、排除条目和恢复边界见 [ACL 早期来源核查](docs/coverage/acl-early-sources-2026-11-09.md)。
```text
paper_atlas/
cli.py 统一命令入口
@@ -0,0 +1,52 @@
# ACL 早期年份:会议存在、出版目录与逐篇资料分开核验
固定普查中 ACL 1963–1978 仍有年份缺口。不能因为会议年表连续,就假设每年都有独立的正式论文集;也不能因为当前目录始于 1979,就断言此前没有摘要、通知或其他公开资料。本次不修改固定的 1,266 个目标年份基准。
## 1978 年:限定 T78-1 的来源关系
[同期年会通知](https://aclanthology.org/J77-4001.pdf)的 PDF 第 9–10 页(印刷页码 9–10)明确说明,1978 年 ACL 年会采用第二届 Theoretical Issues in Natural Language Processing 的形式,地点为 Urbana/Champaign,日期为 7 月 25–27 日。通知中的 ACM 联合赞助确认仍处于待确认状态,不能将该预告改写为已完成的行政决定。
[1982 年 Donald E. Walker 的历史回顾](https://aclanthology.org/www.mt-archive.info/70/ACL-1982-Walker-1.pdf)第 3 页(印刷页码 91)的年会表及缩写说明,独立对应了 1978 年的时间、地点与 TNLP/TINLAP-2 关系。两份扫描件相关页已渲染并逐页目视核对,不仅依靠 OCR。
[官方卷目录](https://aclanthology.org/volumes/T78-1/)与固定 XML `T78.xml` 保留原系列名 TINLAP、完整卷名、1978 年及编辑 David L. Waltz。适配仅接受精确的 collection `T78`、volume `1` 和上述字段组合;关键元数据变化会拒绝处理,等待重新核查。
- 规范事件名使用 `ACL+TINLAP`,原系列名 `TINLAP`、原始 XML 的 `venue_codes: [tinlap]` 及证据均保留。
- ACL/TINLAP 别名只挂在这一规范事件系列上,不把所有 TINLAP 年份都算成 ACL。T75、T87 及 T78 其他卷没有此例外。
- 通知描述了邀请与提交论文两种参与方式,XML 没有逐篇角色。统一暂存为 `proceedings_unspecified`,不猜测每篇属于 invited、main 或 workshop。
- XML 共 36 条条目,其中 T78-1036 是无作者的场次讨论问题列表。精确识别并在 manifest 的 `excluded_materials` 保留其标识、标题与原因;其余 35 条作为具名贡献整理。该排除不推广到所有无作者条目,已识别条目发生变化也须重新核查。
- 全部 35 条 XML 均无摘要。出版目录中的 accepted 是来源观察;通知提及录用/不录用通知时间,不提供任何可识别的拒稿决定,不能制造 rejected 或 withdrawn。
采集器仅生成元数据文件,不写业务数据库。真实来源逐条验收、PostgreSQL 身份预检、串行导入与独立验收仍是后续门槛。35 条来源不等于 35 个新增论文实体,更不等于完成全库去重。
## 1965 年:替代关系不改写为别名
Walker 回顾第 1 页(印刷页码 89)说明,1965 年 ICCL(后来称 COLING)替代了当年的年会。[官方 C65-1 目录](https://aclanthology.org/volumes/C65-1/)及 XML 仍以 COLING 标记该卷。这是限定年份的历史关系,不证明 COLING 与 ACL 是两个可全局互换的名字。
本次保留 C65 原有 `COLING` 归属,不添加 ACL 全局别名、不重放已导入记录、不将某一年的日历关系推广到整个系列,也不据此悄悄减少固定普查缺口。其他 1963–1977 年资料仍须逐年核查;本次不能证明这些年份整体属于非归档例外。
## 固定来源与恢复
服务器证据目录:`/data/paper-index/collected/acl-early-source-evidence-v1`。五份官方响应均 HTTP 200,另有两份来自既有官方 XML checkout 的文件,已与 Git 对象逐字节核对。未下载论文全文集合;两份 PDF 是本次历史/行政取证资料,不进入论文全文库。
| 文件 | SHA256 |
|---|---|
| `acl-venue.html` | `c60f64cb4d72e677aeb84a5844cde28a8d50579e1995f08e8c7801eed1e3fac5` |
| `acl-history-1982.pdf` | `35c21bd4983975bcaccbb94bd8ab91c9019fc190feec1791255407cf18a7e49a` |
| `acl-1978-notice.pdf` | `14b5deb471c55afb07d789529b95d0462a2a1a77df3dfba7fa1f5d3ab75eb411` |
| `tinlap1978-volume.html` | `7e20d709f72f415819e4d17e3674b19dc7d871eabcf0cf8b4935f0392d775729` |
| `coling1965-volume.html` | `0d2f2f49f2a311f9c0b80a8832f6476eb32f94f35abf36f6d2f2e10063ac880f` |
| `T78.xml` | `f712f94cff0cba05f786b7ac31dad2ea9408fde2a17a04531130df623f57dd84` |
| `C65.xml` | `572791610e20b7c6045d984d968e73a18a144bcb5c3da64112001c781826808e` |
XML commit:`a7be623d01c48c61405dec31c871121cdbed5a01`。测试 fixture `tests/fixtures/acl-t78.xml` 是该原始文件,不是手工模拟论文;不包含 PDF。PDF 哈希建立完整性,不单独证明语义,语义依据是上述具体页面。
在服务器使用既有命令,固定 checkout 并输出到新目录:
```sh
paper-atlas collect acl \
--checkout /data/paper-index/raw/metadata-checkouts/acl-anthology \
--collection T78 \
--out /data/paper-index/collected/acl-t78-source-v1
```
该命令会校验/更新官方 metadata checkout,实际 commit 必须以生成清单为准;严格重现本次取证时,使用已冻结的 XML 和上述 commit,不把更新后的内容冒充旧快照。不要将无 collection 限制的全部历史输出直接作为增量队列。采集完成不代表导入完成,恢复前先检查当前单元和报告,不因日志安静重启已执行的写入。
+36
View File
@@ -0,0 +1,36 @@
# 会后选集的元数据采集
`collect springer-selected` 读取已冻结、带 HTTP 回执的公开 HTML,不访问 PDF、不写业务库。目前仅支持核验过的 *Selecting Models from Data: Artificial Intelligence and Statistics IV*,书籍 DOI 为 `10.1007/978-1-4612-2660-4`。增加其他卷前必须另行核对会议关系、目录、年份和字段格式。
[会议官方旧站](https://www.gatsby.ucl.ac.uk/aistats/workshops.html)区分现场分发的 Preliminary Papers 与之后修订、再次评审的选集。[出版社卷说明](https://link.springer.com/book/10.1007/978-1-4612-2660-4)将本书关联到 1993 年 1 月的第四届 workshop,书籍出版年份为 1994。三页目录共有 49 个章节 DOI;分区 Front Matter 不作为章节论文导入。
规范记录保留:
- 会议年份 1993、独立 track `selected_volume` 与事件标识 `aistats-1993-selected-volume-1994`;出版年份单独记为 1994。
- 章节本身的 DOI、作者原始引用写法及顺序、姓名首字母、标题、摘要、页码和逐页原始证据。不扩写作者首字母。
- 明确提供本章 `publication_doi` 投稿出版标识,不把它转移到旧的原始会议评审记录,也不因短标题相同而强制合并实体。
- `springer_selected_volume:publication_format` 标签与独立来源 namespace。
- `accepted` 仅表示章节已列入这本出版选集,原始 1993 投稿评审决定、决定日期和全部录用清单均未知。后续原会议 main、拒稿或撤稿证据可以独立保留。
不能据此宣称会议全部录用、全部投稿或公开拒稿覆盖完整,也不能把出版社机器添加的关键词视为作者标签。未命中选集不等于被拒。
## 按需运行与恢复
输入分别是卷目录/旧站说明和章节页的快照目录。每个目录的 `receipts.json` 包含 `responses` 列表,每条保留 `url`、`final_url`、`file`、`http_status`、`headers`、`bytes`、`sha256`、`at`。需要三页目录、官方旧站说明及全部 49 个章节页面。
```sh
paper-atlas collect springer-selected \
--toc-snapshots /data/paper-index/collected/aistats1993-book-evidence-v1 \
--chapter-snapshots /data/paper-index/collected/aistats1993-chapter-evidence-v1 \
--out /data/paper-index/collected/aistats1993-source-v1
```
采集器验证回执和内容哈希、文件路径、HTTP 类型、目录/章节 DOI 和标题、作者格式、出版年份及页码。Springer 对公开元数据返回的同路径 `cookies_not_supported` 诊断参数会原样保留;不接受其他域、路径、分页变化或未知查询参数。官方旧站说明固定哈希为 `6db205b9dbc82b4a096556efd2aa67e065cad8e0bd6351176b1962ffd1fca179`,变化时须重新审核。
全部文件先核验,输出使用排他锁和暂存目录,完成报告最后发布。已有输出拒绝覆盖;发现不完整或已消费文件,应先查运行状态与报告,另建明确版本目录,不能重放生产导入。
输出 JSONL 配套 manifest 始终为 `partial`。收集完成后还必须做 PostgreSQL 稳定标识/标题/作者身份预检、排除已导入记录、准备限定增量文件、保存旧数据保护基线、原生导入和独立验收。49 条来源不代表 49 个新增论文实体,全部来源处理后仍须全库去重审计。
## 固定测试资料
`tests/fixtures/springer-aistats1993-fixture.json.gz` 保存 4 份范围/目录 HTML、49 份章节 HTML、原始请求回执及独立原始字段审计的预期元数据,SHA256 为 `94028fd37080f9d8027e5790e379cc151ee6eab17ed0d1dcc0f59e6e75f9d4d0`。摘要按 HTML 段落边界分隔;未修改原始 HTML 或回执。它是压缩的公开元数据测试资料,不包含论文 PDF。测试覆盖全部真实章节字段、缺失和漂移输入、来源安全边界、幂等导入及旧拒稿历史保留。构建和测试只在已授权远程 runner 执行。
+1
View File
@@ -13,6 +13,7 @@ COMMANDS = {
('download',): ('paper_atlas.io.snapshots', {}, '下载并校验固定版本快照'),
('collect','pmlr'): ('paper_atlas.collectors.pmlr', {}, 'PMLR 官方元数据'),
('collect','acl'): ('paper_atlas.collectors.acl', {}, 'ACL Anthology XML'),
('collect','springer-selected'): ('paper_atlas.collectors.springer_selected', {}, '核验限定的会后选集章节与原会议关系'),
('collect','iclr-archive'): ('paper_atlas.collectors.iclr_archive', {}, '核对ICLR 2014–2016官方历史录用档案'),
('collect','iclr-program'): ('paper_atlas.collectors.iclr', {}, 'ICLR 官方公开程序'),
('collect','iclr-snapshot'): ('paper_atlas.collectors.openreview', {}, 'ICLR 公开投稿与决定快照'),
+15 -3
View File
@@ -6,6 +6,7 @@ import xml.etree.ElementTree as ET
from pathlib import Path
from paper_atlas.io.git_metadata import checkout_metadata
from paper_atlas.collectors.acl_historical import event_scope, material_reason
VENUES={'acl':'ACL','emnlp':'EMNLP','naacl':'NAACL','eacl':'EACL','coling':'COLING','conll':'CoNLL'}
@@ -29,7 +30,10 @@ def paper_id(collection,volume,number):
return f'{collection}-{int(volume):0{width}d}{int(number):0{digits}d}'
def volume_scope(meta,volume):
def volume_scope(meta,volume,collection=None):
historical=event_scope(meta,volume,collection)
if historical:
return historical['canonical_venue'],historical['venue_aliases'],historical['track']
codes=[text(n).lower() for n in meta.findall('venue')]
book=text(meta.find('booktitle'))
lower=book.lower()
@@ -59,7 +63,7 @@ def collect_xml(path,out,commit):
vid=volume.attrib['id']
meta=volume.find('meta')
if meta is None:raise ValueError('Volume metadata missing')
scope=volume_scope(meta,vid)
scope=volume_scope(meta,vid,collection)
key=f'{collection}-{vid}'
if scope is None:
results.append({'volume':key,'status':'excluded_by_venue','venue_codes':[text(n) for n in meta.findall('venue')],'booktitle':text(meta.find('booktitle')),'year':text(meta.find('year'))})
@@ -70,12 +74,18 @@ def collect_xml(path,out,commit):
year=int(year_text)
records=[]
frontmatter=0
excluded_materials=[]
historical=event_scope(meta,vid,collection)
for paper in volume.findall('paper'):
pid=paper.attrib['id']
if int(pid)==0:
frontmatter+=1
continue
identifier=paper_id(collection,vid,pid)
reason=material_reason(collection,vid,paper)
if reason:
excluded_materials.append({'external_id':identifier,'title':text(paper.find('title')),'reason':reason})
continue
doi=text(paper.find('doi'))
if doi.startswith('10.18653/v1/') and doi.split('10.18653/v1/',1)[1].casefold()!=identifier.casefold():
raise ValueError('Official DOI disagrees with constructed Anthology ID: '+identifier)
@@ -83,6 +93,8 @@ def collect_xml(path,out,commit):
if not title:raise ValueError('Missing paper title: '+identifier)
authors=[{'given':text(a.find('first')),'family':text(a.find('last'))} for a in paper.findall('author')]
records.append({'source':'acl_anthology','external_id':identifier,'url':f'https://aclanthology.org/{identifier}/','title':title,'abstract':text(paper.find('abstract')) or None,'authors':authors,'identifiers':{'acl':identifier,'doi':doi},'venue':venue,'venue_aliases':aliases if len(aliases)>1 else [],'year':year,'track':track,'status':'accepted','raw_decision':'listed in authoritative ACL Anthology proceedings XML','metadata':{'collection':collection,'volume':vid,'booktitle':text(meta.find('booktitle')),'venue_codes':[text(n) for n in meta.findall('venue')],'pages':text(paper.find('pages')),'publisher':text(meta.find('publisher')),'metadata_commit':commit,'source_xml':f'https://github.com/acl-org/acl-anthology/blob/{commit}/data/xml/{collection}.xml'}})
if historical:
records[-1]['metadata']['historical_event_scope']=historical
if not records:
results.append({'volume':key,'status':'unavailable','reason':'no research paper elements after excluding front matter'})
continue
@@ -93,7 +105,7 @@ def collect_xml(path,out,commit):
for record in records:output.write(json.dumps(record,ensure_ascii=False)+'\n')
part.replace(target)
missing=sum(not row['abstract'] for row in records)
manifest={'source':'acl_anthology','venue':venue,'year':year,'track':track,'count':len(records),'xml_paper_elements':len(volume.findall('paper')),'excluded_frontmatter':frontmatter,'missing_abstract_count':missing,'list_url':f'https://aclanthology.org/{key}/','metadata_commit':commit,'file':str(target),'status':'partial' if missing else 'collected'}
manifest={'source':'acl_anthology','venue':venue,'year':year,'track':track,'count':len(records),'xml_paper_elements':len(volume.findall('paper')),'excluded_frontmatter':frontmatter,'excluded_materials':excluded_materials,'missing_abstract_count':missing,'list_url':f'https://aclanthology.org/{key}/','metadata_commit':commit,'file':str(target),'status':'partial' if missing else 'collected'}
target.with_suffix('.manifest.json').write_text(json.dumps(manifest,indent=2))
results.append(manifest)
print(json.dumps(manifest),flush=True)
+45
View File
@@ -0,0 +1,45 @@
"""Edition-specific historical scope; never alias every TINLAP year to ACL."""
HISTORY_URL = 'https://aclanthology.org/www.mt-archive.info/70/ACL-1982-Walker-1.pdf'
NOTICE_URL = 'https://aclanthology.org/J77-4001.pdf'
BOOK = 'Theoretical Issues in Natural Language Processing-2'
MATERIAL_TITLE = 'List of questions suggested for consideration in each session'
def text(node):
return ' '.join(''.join(node.itertext()).split()) if node is not None else ''
def event_scope(meta, volume, collection):
if (collection, volume) != ('T78', '1'):
return None
if ([text(n) for n in meta.findall('venue')] != ['tinlap']
or [text(n) for n in meta.findall('year')] != ['1978']
or [text(n) for n in meta.findall('booktitle')] != [BOOK]
or [(text(n.find('first')), text(n.find('last'))) for n in meta.findall('editor')]
!= [('David L.', 'Waltz')]):
raise ValueError('Reviewed T78-1 scope metadata changed; independent review required')
return {
'collection': 'T78', 'volume': '1', 'original_venue': 'TINLAP',
'event_year': 1978, 'event_dates': ['1978-07-25', '1978-07-27'],
'relationship': 'ACL annual meeting took the form of TINLAP-2',
'canonical_venue': 'ACL+TINLAP', 'venue_aliases': ['ACL', 'TINLAP'],
'track': 'proceedings_unspecified',
'track_scope_note': 'Invited and submitted contributions are described at volume level; individual roles are not identified in XML.',
'evidence': [
{'url': NOTICE_URL, 'sha256': '14b5deb471c55afb07d789529b95d0462a2a1a77df3dfba7fa1f5d3ab75eb411',
'pdf_pages': [9, 10], 'printed_pages': ['9', '10'],
'scope': 'Contemporary annual meeting notice, not individual decision notes; ACM confirmation was pending in this notice.'},
{'url': HISTORY_URL, 'sha256': '35c21bd4983975bcaccbb94bd8ab91c9019fc190feec1791255407cf18a7e49a',
'pdf_pages': [3], 'printed_pages': ['91'],
'scope': 'Retrospective annual meeting table and TNLP abbreviation confirm the 1978 event association.'},
],
}
def material_reason(collection, volume, paper):
if (collection, volume, paper.attrib.get('id')) != ('T78', '1', '36'):
return None
if text(paper.find('title')) != MATERIAL_TITLE or paper.findall('author'):
raise ValueError('Reviewed T78-1036 material changed; independent review required')
return 'Session question list, not an authored research contribution; no decision inferred.'
+231
View File
@@ -0,0 +1,231 @@
"""Reviewed postconference selected volumes from frozen public HTML metadata."""
import argparse
from collections import defaultdict
import fcntl
import hashlib
import json
from pathlib import Path
import re
import tempfile
from urllib.parse import parse_qs, urlsplit
from paper_atlas.db.submissions import timestamp
from paper_atlas.io.html import Document, clean
SOURCE = 'springer_selected_volume'
BOOK = '10.1007/978-1-4612-2660-4'
BOOK_URL = 'https://link.springer.com/book/'+BOOK
HISTORY_URL = 'https://www.gatsby.ucl.ac.uk/aistats/workshops.html'
HISTORY_SHA = '6db205b9dbc82b4a096556efd2aa67e065cad8e0bd6351176b1962ffd1fca179'
SCOPE = {
'venue': 'AISTATS', 'year': 1993, 'track': 'selected_volume',
'event_key': 'aistats-1993-selected-volume-1994',
'publication_year': 1994, 'book_doi': BOOK,
'book_title': 'Selecting Models from Data', 'expected_chapters': 49,
'relationship': 'Selected workshop papers were revised and rereviewed for later publication; this is not the original complete workshop decision list.',
}
def snapshot_index(root):
root = Path(root).resolve()
receipts = json.loads((root/'receipts.json').read_bytes())['responses']
index = {}
for receipt in receipts:
url = receipt['url']
if url in index:
raise ValueError('Duplicate snapshot URL')
index[url] = (root, receipt)
return index
def read_page(index, url):
if url not in index:
raise ValueError('Missing required public HTML snapshot: '+url)
root, receipt = index[url]
filename = Path(receipt['file'])
path = root/filename
content_type = {k.lower():v for k,v in receipt.get('headers', {}).items()}.get('content-type', '')
requested, final = urlsplit(url), urlsplit(receipt.get('final_url', ''))
query = parse_qs(final.query, keep_blank_values=True)
original_query = parse_qs(requested.query, keep_blank_values=True)
# Springer returns the public metadata with an explicit cookie diagnostic.
# Retain that final URL verbatim; accept no other redirect or changed page.
if query != original_query and requested.netloc == 'link.springer.com':
if (query.pop('error', None) != ['cookies_not_supported']
or not re.fullmatch(r'[0-9a-f-]{36}', ''.join(query.pop('code', [])))):
raise ValueError('Unreviewed Springer redirect query')
if (filename.is_absolute() or '..' in filename.parts or not path.resolve().is_relative_to(root)
or receipt.get('http_status') != 200
or (final.scheme, final.netloc, final.path) != (requested.scheme, requested.netloc, requested.path)
or final.fragment or query != original_query
or 'text/html' not in content_type.lower()):
raise ValueError('Unsafe, redirected or unsuccessful public HTML snapshot')
raw = path.read_bytes()
digest = hashlib.sha256(raw).hexdigest()
if len(raw) > 2_000_000 or len(raw) != receipt['bytes'] or digest != receipt['sha256']:
raise ValueError('Snapshot checksum or size differs')
evidence = {'url':url, 'sha256':digest, 'bytes':len(raw),
'file':'evidence/'+digest+'.html', 'http_status':200,
'observed_at':timestamp(receipt['at']), 'response_receipt':receipt}
return raw, evidence
def parse_toc(html, *, excluded_materials=None):
entries = {}
for node in Document(html).root.walk():
if node.tag != 'li' or node.attrs.get('data-test') != 'chapter':
continue
links = [n for n in node.walk() if n.tag == 'a' and re.fullmatch(
r'/chapter/'+re.escape(BOOK)+r'_[1-9]\d*', n.attrs.get('href', ''))]
if not links:
headings = [clean(n.text()) for n in node.walk() if n.tag in ('h3','h4')]
frontmatter = [n.attrs.get('href','') for n in node.walk()
if n.tag == 'a' and n.attrs.get('data-test') == 'front-matter-pdf']
if headings == ['Front Matter'] and len(frontmatter) == 1:
if excluded_materials is not None:
excluded_materials.append({'title':'Front Matter', 'url':frontmatter[0],
'reason':'Section front matter without a chapter DOI; not an authored chapter.'})
continue
if len(links) != 1:
raise ValueError('Chapter entry lacks one reviewed-book DOI')
link, = links
doi = link.attrs['href'].removeprefix('/chapter/')
if doi in entries or not clean(link.text()):
raise ValueError('Duplicate DOI or missing chapter title')
entries[doi] = clean(link.text())
return entries
def parse_chapter(html, doi):
nodes = list(Document(html).root.walk())
meta = defaultdict(list)
for node in nodes:
if node.tag == 'meta' and node.attrs.get('name', '').startswith('citation_'):
meta[node.attrs['name']].append(node.attrs.get('content', ''))
def one(key):
values = meta[key]
if len(values) != 1 or not values[0]:
raise ValueError('Missing or ambiguous citation field: '+key)
return values[0]
if (one('citation_doi') != doi or one('citation_inbook_title') != SCOPE['book_title']
or one('citation_publication_date') != str(SCOPE['publication_year'])):
raise ValueError('Chapter DOI, book or publication year differs from reviewed scope')
raw_authors = meta['citation_author']
if not raw_authors:
raise ValueError('Missing named chapter authors')
authors = []
for raw in raw_authors:
if raw.count(',') != 1:
raise ValueError('Unreviewed citation author format')
family, given = [clean(s) for s in raw.split(',', 1)]
if not family or not given:
raise ValueError('Incomplete citation author')
authors.append({'given':given, 'family':family})
abstract_nodes = [n for n in nodes if n.attrs.get('id') == 'Abs1-content']
if len(abstract_nodes) > 1:
raise ValueError('Ambiguous abstract section')
abstract = clean(abstract_nodes[0].text()) if abstract_nodes else None
first, last = one('citation_firstpage'), one('citation_lastpage')
if not first.isdigit() or not last.isdigit() or int(first) > int(last):
raise ValueError('Invalid chapter pages')
return {'doi':doi, 'title':one('citation_title'), 'authors':authors,
'authors_citation_raw':list(raw_authors), 'abstract':abstract or None,
'first_page':first, 'last_page':last}
def record_for(chapter, evidence, scope_evidence):
return {
'source':SOURCE, 'external_id':chapter['doi'],
'url':'https://link.springer.com/chapter/'+chapter['doi'],
'title':chapter['title'], 'abstract':chapter['abstract'], 'authors':chapter['authors'],
'identifiers':{'doi':chapter['doi']},
'submission_identifiers':[{'scheme':'publication_doi','value':chapter['doi']}],
**{k:SCOPE[k] for k in ('venue','year','track','event_key')},
'status':'accepted', 'observed_at':evidence['observed_at'],
'raw_decision':'listed in the 1994 selected postconference volume; original 1993 review decision not supplied',
'tags':[{'namespace':SOURCE+':publication_format','value':'selected_volume_chapter'}],
'metadata':{
'publication_format':'selected_volume_chapter', 'bibliographic_year':1994,
'related_workshop_year':1993, 'book_doi':BOOK, 'book_title':SCOPE['book_title'],
'year_basis':'Reviewed workshop year; bibliographic publication year is separately retained.',
'first_page':chapter['first_page'], 'last_page':chapter['last_page'],
'authors_citation_raw':chapter['authors_citation_raw'],
'publication_evidence':'Published selected-volume chapter, not an original workshop decision note.',
'scope_relationship':SCOPE['relationship'], 'decision_date_precision':'not_supplied',
'source_evidence':evidence, 'scope_evidence':scope_evidence,
},
}
def collect(out, *, toc_snapshots, chapter_snapshots):
toc_index, chapter_index = snapshot_index(toc_snapshots), snapshot_index(chapter_snapshots)
frozen = {}
def read(index, url):
raw, evidence = read_page(index, url)
frozen[evidence['file']] = raw
return raw.decode('utf-8'), evidence
history, history_evidence = read(toc_index, HISTORY_URL)
if hashlib.sha256(history.encode()).hexdigest() != HISTORY_SHA:
raise ValueError('Reviewed selected-volume relationship evidence changed')
scope_evidence = [history_evidence]
titles, excluded = {}, []
for page in range(1, 4):
html, evidence = read(toc_index, BOOK_URL+('?page='+str(page) if page > 1 else ''))
scope_evidence.append(evidence)
entries = parse_toc(html, excluded_materials=excluded)
if titles.keys() & entries.keys():
raise ValueError('DOI repeated across TOC pages')
titles.update(entries)
expected = {BOOK+'_'+str(i) for i in range(1, 50)}
if titles.keys() != expected:
raise ValueError('Reviewed 49-chapter inventory changed')
chapter_urls = {'https://link.springer.com/chapter/'+doi for doi in expected}
if chapter_index.keys() != chapter_urls:
raise ValueError('Missing or extraneous chapter snapshot')
records = []
for doi in sorted(expected, key=lambda s:int(s.rsplit('_',1)[1])):
html, evidence = read(chapter_index, 'https://link.springer.com/chapter/'+doi)
chapter = parse_chapter(html, doi)
if chapter['title'] != titles[doi]:
raise ValueError('Chapter title disagrees with official TOC')
records.append(record_for(chapter, evidence, scope_evidence))
out = Path(out)
out.mkdir(parents=True, exist_ok=True)
with (out/'springer-selected.collect.lock').open('a') as lock:
fcntl.flock(lock, fcntl.LOCK_EX | fcntl.LOCK_NB)
if any(p.name != 'springer-selected.collect.lock' for p in out.iterdir()):
raise FileExistsError('Existing output must be inspected, not overwritten')
with tempfile.TemporaryDirectory(prefix='.springer-selected-', dir=out) as temporary:
stage = Path(temporary)
(stage/'evidence').mkdir()
for filename, raw in frozen.items():
(stage/filename).write_bytes(raw)
path = stage/'springer-aistats-1993-selected-volume.jsonl'
path.write_text(''.join(json.dumps(r,ensure_ascii=False)+'\n' for r in records))
manifest = {'source':SOURCE, 'parser_version':1,
**{k:SCOPE[k] for k in ('venue','year','track','event_key')},
'count':len(records), 'file':str(out/path.name),
'file_sha256':hashlib.sha256(path.read_bytes()).hexdigest(),
'list_url':BOOK_URL, 'status':'partial',
'excluded_materials':excluded,
'missing_abstract_count':sum(not r['abstract'] for r in records)}
path.with_suffix('.manifest.json').write_text(json.dumps(manifest,indent=2)+'\n')
report = {'status':'collected_pending_identity_review', 'records':len(records),
'files':[manifest], 'reviewed_scope':SCOPE, 'database_written':False,
'pdfs_downloaded':False, 'scope_evidence':scope_evidence}
(stage/'collection-report.json').write_text(json.dumps(report,ensure_ascii=False,indent=2)+'\n')
for item in stage.iterdir():
if item.name != 'collection-report.json':
item.replace(out/item.name)
(stage/'collection-report.json').replace(out/'collection-report.json')
return report
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog)
parser.add_argument('--toc-snapshots', required=True)
parser.add_argument('--chapter-snapshots', required=True)
parser.add_argument('--out', required=True)
args = parser.parse_args(argv)
print(json.dumps(collect(args.out, toc_snapshots=args.toc_snapshots,
chapter_snapshots=args.chapter_snapshots),ensure_ascii=False))
+273
View File
@@ -0,0 +1,273 @@
<?xml version='1.0' encoding='UTF-8'?>
<collection id="T78">
<volume id="1" type="proceedings">
<!-- https://aclanthology.org/T78-1/ -->
<meta>
<booktitle>Theoretical Issues in Natural Language <fixed-case>P</fixed-case>rocessing-2</booktitle>
<editor id="david-l-waltz"><first>David L.</first><last>Waltz</last></editor>
<venue>tinlap</venue>
<year>1978</year>
</meta>
<frontmatter>
<!-- https://aclanthology.org/T78-1000/ -->
<pdf hash="fb6164ad"/>
<bibkey>tinlap-1978-theoretical</bibkey>
</frontmatter>
<paper id="1">
<!-- https://aclanthology.org/T78-1001/ -->
<title>Testing The Psychological Reality of a Representational Model</title>
<author><first>Dedre</first><last>Gentner</last></author>
<pdf hash="f723a956"/>
<bibkey>gentner-1978-testing-psychological</bibkey>
</paper>
<paper id="2">
<!-- https://aclanthology.org/T78-1002/ -->
<title>What Makes Something “Ad Hoc”</title>
<author id="roger-c-schank"><first>Roger C.</first><last>Schank</last></author>
<pdf hash="636853f9"/>
<bibkey>schank-1978-makes-something</bibkey>
</paper>
<paper id="3">
<!-- https://aclanthology.org/T78-1003/ -->
<title>The Relation of Grammar to Cognition–a Synopsis</title>
<author><first>Leonard</first><last>Talmy</last></author>
<pdf hash="101c67dc"/>
<bibkey>talmy-1978-relation-grammar</bibkey>
</paper>
<paper id="4">
<!-- https://aclanthology.org/T78-1004/ -->
<title>On primitives, prototypes, and other semantic anomalies</title>
<author><first>Terry</first><last>Winograd</last></author>
<pdf hash="f8e47023"/>
<bibkey>winograd-1978-primitives-prototypes</bibkey>
</paper>
<paper id="5">
<!-- https://aclanthology.org/T78-1005/ -->
<title>Taxonomic Lattice Structures for Situation Recognition</title>
<author id="william-a-woods"><first>William A.</first><last>Woods</last></author>
<pdf hash="92957ddf"/>
<bibkey>woods-1978-taxonomic-lattice</bibkey>
</paper>
<paper id="6">
<!-- https://aclanthology.org/T78-1006/ -->
<title>Description Formation and Discourse Model Synthesis</title>
<author id="bonnie-webber"><first>Bonnie Lynn</first><last>Webber</last></author>
<pdf hash="ffded1d2"/>
<bibkey>webber-1978-description-formation</bibkey>
</paper>
<paper id="7">
<!-- https://aclanthology.org/T78-1007/ -->
<title>The Processing of Referring Expressions within a Semantic Network</title>
<author><first>John R.</first><last>Anderson</last></author>
<pdf hash="8bcc083a"/>
<bibkey>anderson-1978-processing-referring</bibkey>
</paper>
<paper id="8">
<!-- https://aclanthology.org/T78-1008/ -->
<title>Reference Diaries</title>
<author><first>Herbert H.</first><last>Clark</last></author>
<author><first>Catherine</first><last>Marshall</last></author>
<pdf hash="d06b7ea2"/>
<bibkey>clark-marshall-1978-reference-diaries</bibkey>
</paper>
<paper id="9">
<!-- https://aclanthology.org/T78-1009/ -->
<title>Subsequent Reference: Syntactic and Rhetorical Constraints</title>
<author id="david-d-mcdonald"><first>David D.</first><last>McDonald</last></author>
<pdf hash="2d424559"/>
<bibkey>mcdonald-1978-subsequent-reference</bibkey>
</paper>
<paper id="10">
<!-- https://aclanthology.org/T78-1010/ -->
<title>Some Psycholinguistic Constraints on the Construction and Interpretation of Definite Descriptions</title>
<author><first>Andrew</first><last>Ortony</last></author>
<pdf hash="69807727"/>
<bibkey>ortony-1978-psycholinguistic-constraints</bibkey>
</paper>
<paper id="11">
<!-- https://aclanthology.org/T78-1011/ -->
<title>Bound Variables and Other Anaphors</title>
<author id="barbara-h-partee"><first>Barbara H.</first><last>Partee</last></author>
<pdf hash="e8e6a510"/>
<bibkey>partee-1978-bound-variables</bibkey>
</paper>
<paper id="12">
<!-- https://aclanthology.org/T78-1012/ -->
<title>The Use of Focus as a Tool for Disambiguation of Definite Noun Phrases</title>
<author id="candace-l-sidner"><first>Candace L.</first><last>Sidner</last></author>
<pdf hash="7b96d2b7"/>
<bibkey>sidner-1978-use-focus</bibkey>
</paper>
<paper id="13">
<!-- https://aclanthology.org/T78-1013/ -->
<title>Focusing in Dialog</title>
<author id="barbara-j-grosz"><first>Barbara J.</first><last>Grosz</last></author>
<pdf hash="8c8d4c2e"/>
<bibkey>grosz-1978-focusing-dialog</bibkey>
</paper>
<paper id="14">
<!-- https://aclanthology.org/T78-1014/ -->
<title>Topic Levels</title>
<author><first>Joseph E.</first><last>Grimes</last></author>
<pdf hash="f485b2ba"/>
<bibkey>grimes-1978-topic-levels</bibkey>
</paper>
<paper id="15">
<!-- https://aclanthology.org/T78-1015/ -->
<title>Toward a Rational Model of Discourse Comprehension</title>
<author><first>Jerry L.</first><last>Morgan</last></author>
<pdf hash="5e12a597"/>
<bibkey>morgan-1978-toward-rational</bibkey>
</paper>
<paper id="16">
<!-- https://aclanthology.org/T78-1016/ -->
<title>Assent and Compliance in Children’s Language Comprehension</title>
<author><first>David R.</first><last>Olson</last></author>
<pdf hash="708bc4a0"/>
<bibkey>olson-1978-assent-compliance</bibkey>
</paper>
<paper id="17">
<!-- https://aclanthology.org/T78-1017/ -->
<title>Speech Acts as a Basis for Understanding Dialogue Coherence</title>
<author id="c-raymond-perrault"><first>C. Raymond</first><last>Perrault</last></author>
<author id="james-allen"><first>James F.</first><last>Allen</last></author>
<pdf hash="d111402b"/>
<bibkey>perrault-allen-1978-speech</bibkey>
</paper>
<paper id="18">
<!-- https://aclanthology.org/T78-1018/ -->
<title>A Framework for Comparing Language Experiences (with particular emphasis on: The Effect of Audience on Discourse Models)</title>
<author><first>Andee</first><last>Rubin</last></author>
<pdf hash="5d9a6150"/>
<bibkey>rubin-1978-framework-comparing</bibkey>
</paper>
<paper id="19">
<!-- https://aclanthology.org/T78-1019/ -->
<title>Intentlonallty and Human Conversations</title>
<author id="jaime-g-carbonell"><first>Jaime G.</first><last>Carbonell Jr</last></author>
<pdf hash="c50fc619"/>
<bibkey>carbonell-jr-1978-intentlonallty-human</bibkey>
</paper>
<paper id="20">
<!-- https://aclanthology.org/T78-1020/ -->
<title>On the Interdependence of Language and Perception</title>
<author id="david-l-waltz"><first>David L.</first><last>Waltz</last></author>
<pdf hash="3c708191"/>
<bibkey>waltz-1978-interdependence-language</bibkey>
</paper>
<paper id="21">
<!-- https://aclanthology.org/T78-1021/ -->
<title>The Problem of Naming Shapes: Vision-Language Interface</title>
<author id="ruzena-bajcsy"><first>R.</first><last>Bajcsy</last></author>
<author id="aravind-joshi"><first>A. K.</first><last>Joshi</last></author>
<pdf hash="50331b4e"/>
<bibkey>bajcsy-joshi-1978-problem-naming</bibkey>
</paper>
<paper id="22">
<!-- https://aclanthology.org/T78-1022/ -->
<title>An Argument about the Composition of Conceptual Structure</title>
<author><first>Ray</first><last>Jackendoff</last></author>
<pdf hash="57d001f8"/>
<bibkey>jackendoff-1978-argument-composition</bibkey>
</paper>
<paper id="23">
<!-- https://aclanthology.org/T78-1023/ -->
<title>On the Ontological Status of Visual Mental Images</title>
<author><first>Stephen Michael</first><last>Kosslyn</last></author>
<pdf hash="fd06e265"/>
<bibkey>kosslyn-1978-ontological-status</bibkey>
</paper>
<paper id="24">
<!-- https://aclanthology.org/T78-1024/ -->
<title>What has language to do with perception? Some speculations on the <i>Lingua Mentis</i></title>
<author><first>Zenon W.</first><last>Pylyshyn</last></author>
<pdf hash="a2f3a044"/>
<bibkey>pylyshyn-1978-language-perception</bibkey>
</paper>
<paper id="25">
<!-- https://aclanthology.org/T78-1025/ -->
<title>Semantic Primitives in Language and Vision</title>
<author id="yorick-wilks"><first>Yorick</first><last>Wilks</last></author>
<pdf hash="b4e13896"/>
<bibkey>wilks-1978-semantic-primitives</bibkey>
</paper>
<paper id="26">
<!-- https://aclanthology.org/T78-1026/ -->
<title>A Note on Partial Match of Descriptions. Can One Simultaneously Question (Retrieve) and Inform (Update)?</title>
<author id="aravind-joshi"><first>Aravind K.</first><last>Joshi</last></author>
<pdf hash="74969243"/>
<bibkey>joshi-1978-note-partial</bibkey>
</paper>
<paper id="27">
<!-- https://aclanthology.org/T78-1027/ -->
<title>With a Spoon in Hand This Must Be the Eating Frame</title>
<author><first>Eugene</first><last>Charniak</last></author>
<pdf hash="f1be68bb"/>
<bibkey>charniak-1978-spoon-hand</bibkey>
</paper>
<paper id="28">
<!-- https://aclanthology.org/T78-1028/ -->
<title>Fragments of a Theory of Human Plausible Reasoning</title>
<author><first>Allan</first><last>Collins</last></author>
<pdf hash="67b4bca2"/>
<bibkey>collins-1978-fragments-theory</bibkey>
</paper>
<paper id="29">
<!-- https://aclanthology.org/T78-1029/ -->
<title>Indirect Responses to Loaded Questions</title>
<author><first>S. Jerrold</first><last>Kaplan</last></author>
<pdf hash="135037f9"/>
<bibkey>kaplan-1978-indirect-responses</bibkey>
</paper>
<paper id="30">
<!-- https://aclanthology.org/T78-1030/ -->
<title>On Reasoning by Default</title>
<author><first>Raymond</first><last>Reiter</last></author>
<pdf hash="0de53d33"/>
<bibkey>reiter-1978-reasoning-default</bibkey>
</paper>
<paper id="31">
<!-- https://aclanthology.org/T78-1031/ -->
<title>Path-Based and Node-Based Inference in Semantic Networks</title>
<author id="stuart-c-shapiro"><first>Stuart C.</first><last>Shapiro</last></author>
<pdf hash="2ddc5535"/>
<bibkey>shapiro-1978-path-based</bibkey>
</paper>
<paper id="32">
<!-- https://aclanthology.org/T78-1032/ -->
<title>The Representation of Derivable Information in Memory: When What Might Have Been Left Unsaid Is Said</title>
<author><first>Rand J.</first><last>Spiro</last></author>
<author><first>Joseph</first><last>Esposito</last></author>
<author><first>Richard J.</first><last>Vondruska</last></author>
<pdf hash="7758fb45"/>
<bibkey>spiro-etal-1978-representation-derivable</bibkey>
</paper>
<paper id="33">
<!-- https://aclanthology.org/T78-1033/ -->
<title>A Heuristic for Paradigms</title>
<author><first>Joseph E.</first><last>Grimes</last></author>
<pdf hash="53b42c16"/>
<bibkey>grimes-1978-heuristic-paradigms</bibkey>
</paper>
<paper id="34">
<!-- https://aclanthology.org/T78-1034/ -->
<title>A Computational Account of Some Constraints on Language</title>
<author id="mitch-marcus"><first>Mitchell</first><last>Marcus</last></author>
<pdf hash="c9724c43"/>
<bibkey>marcus-1978-computational-account</bibkey>
</paper>
<paper id="35">
<!-- https://aclanthology.org/T78-1035/ -->
<title>Remarks on Processing, Constraints, and the Lexicon</title>
<author id="thomas-wasow"><first>Thomas</first><last>Wasow</last></author>
<pdf hash="8beed275"/>
<bibkey>wasow-1978-remarks-processing</bibkey>
</paper>
<paper id="36">
<!-- https://aclanthology.org/T78-1036/ -->
<title>List of questions suggested for consideration in each session</title>
<pdf hash="1950b908"/>
<bibkey>nn-1978-list-questions</bibkey>
</paper>
</volume>
</collection>
Binary file not shown.
+114
View File
@@ -0,0 +1,114 @@
"""Pinned T78 evidence, edition-local aliases and an explicitly identified material."""
import copy
import hashlib
import json
from pathlib import Path
import sqlite3
import tempfile
import unittest
import xml.etree.ElementTree as ET
from paper_atlas.collectors.acl import collect_xml, volume_scope
from paper_atlas.collectors.acl_historical import event_scope, material_reason
from paper_atlas.db.store import Store
from paper_atlas.ingestion.records import ingest_file
FIXTURE = Path(__file__).parent/'fixtures/acl-t78.xml'
COMMIT = 'a7be623d01c48c61405dec31c871121cdbed5a01'
class AclHistoricalTests(unittest.TestCase):
def setUp(self):
self.root = ET.parse(FIXTURE).getroot()
self.volume = self.root.find('volume')
self.meta = self.volume.find('meta')
def test_frozen_volume_matches_official_snapshot(self):
self.assertEqual(hashlib.sha256(FIXTURE.read_bytes()).hexdigest(), 'f712f94cff0cba05f786b7ac31dad2ea9408fde2a17a04531130df623f57dd84')
self.assertEqual(len(self.volume.findall('paper')), 36)
self.assertEqual(volume_scope(self.meta, '1', 'T78'), ('ACL+TINLAP', ['ACL', 'TINLAP'], 'proceedings_unspecified'))
def test_unknown_year_collection_or_volume_is_not_globally_aliased(self):
for collection, volume in [('T75', '1'), ('T87', '1'), ('T78', '2'), ('C65', '1')]:
with self.subTest(collection=collection, volume=volume):
self.assertIsNone(event_scope(self.meta, volume, collection))
self.assertIsNone(volume_scope(self.meta, volume, collection))
self.assertIsNone(volume_scope(self.meta, '1'))
def test_known_volume_scope_rejects_critical_metadata_drift(self):
for field, replacement in [('venue', 'acl'), ('year', '1979'), ('booktitle', 'Another TINLAP'), ('editor/first', 'Another')]:
changed = copy.deepcopy(self.meta)
changed.find(field).text = replacement
with self.subTest(field=field), self.assertRaises(ValueError):
event_scope(changed, '1', 'T78')
changed = copy.deepcopy(self.meta)
ET.SubElement(changed, 'year').text = '1978'
with self.assertRaises(ValueError):
event_scope(changed, '1', 'T78')
def test_evidence_retains_original_series_dates_and_role_boundary(self):
scope = event_scope(self.meta, '1', 'T78')
self.assertEqual(scope['original_venue'], 'TINLAP')
self.assertEqual(scope['event_dates'], ['1978-07-25', '1978-07-27'])
self.assertEqual([e['pdf_pages'] for e in scope['evidence']], [[9, 10], [3]])
self.assertIn('not identified', scope['track_scope_note'])
self.assertIn('pending', scope['evidence'][0]['scope'])
def test_only_exact_session_questions_material_is_excluded(self):
paper = copy.deepcopy(self.volume.findall('paper')[-1])
self.assertIn('Session question list', material_reason('T78', '1', paper))
self.assertIsNone(material_reason('C65', '1', paper))
self.assertIsNone(material_reason('T78', '2', paper))
paper.set('id', '37')
self.assertIsNone(material_reason('T78', '1', paper))
paper.set('id', '36')
ET.SubElement(paper, 'author')
with self.assertRaises(ValueError):
material_reason('T78', '1', paper)
def test_all_authored_source_fields_and_material_receipt_survive_collection(self):
with tempfile.TemporaryDirectory() as temporary:
manifest, = collect_xml(FIXTURE, temporary, COMMIT)
rows = [json.loads(raw) for raw in Path(manifest['file']).read_text().splitlines()]
self.assertEqual(manifest['count'], 35)
self.assertEqual(manifest['xml_paper_elements'], 36)
self.assertEqual(manifest['missing_abstract_count'], 35)
self.assertEqual(manifest['excluded_materials'][0]['external_id'], 'T78-1036')
for number, row in enumerate(rows, 1):
paper = self.volume.findall('paper')[number-1]
self.assertEqual(row['external_id'], f'T78-1{number:03d}')
self.assertEqual(row['title'], ' '.join(''.join(paper.find('title').itertext()).split()))
self.assertEqual(row['metadata']['venue_codes'], ['tinlap'])
self.assertEqual(row['metadata']['historical_event_scope']['original_venue'], 'TINLAP')
self.assertEqual(row['metadata']['metadata_commit'], COMMIT)
self.assertEqual((row['status'], row['track'], row['abstract']), ('accepted', 'proceedings_unspecified', None))
def test_old_coling_scope_is_unchanged_by_calendar_replacement_evidence(self):
meta = ET.fromstring('<meta><venue>coling</venue><year>1965</year><booktitle>COLING 1965</booktitle></meta>')
self.assertEqual(volume_scope(meta, '1', 'C65'), ('COLING', ['COLING'], 'main'))
self.assertIsNone(event_scope(meta, '1', 'C65'))
def test_native_ingestion_does_not_alias_other_tinlap_years_or_infer_negative_status(self):
with tempfile.TemporaryDirectory() as temporary:
root = Path(temporary)
manifest, = collect_xml(FIXTURE, root/'source', COMMIT)
db = root/'sample.sqlite'
store = Store(db)
pid, rid = store.record('test_control', 'tinlap1975', 'https://example.org/tinlap1975',
'An earlier TINLAP contribution', None, ['Jane Doe'])
store.decision(pid, rid, 'TINLAP', 1975, 'main', 'tinlap1975', 'https://example.org/tinlap1975', 'accepted', 'test control')
store.conn.commit()
store.conn.close()
ingest_file(db, manifest['file'])
ingest_file(db, manifest['file'])
with sqlite3.connect(db) as c:
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0], 36)
self.assertEqual(c.execute('SELECT count(*) FROM submissions').fetchone()[0], 36)
self.assertEqual(c.execute('SELECT count(*) FROM decisions').fetchone()[0], 36)
self.assertEqual(c.execute("SELECT count(*) FROM decisions WHERE status!='accepted'").fetchone()[0], 0)
self.assertIsNone(c.execute("SELECT 1 FROM source_records WHERE external_id='T78-1036'").fetchone())
aliases = c.execute('SELECT v.acronym,a.alias FROM venue_aliases a JOIN venues v ON v.id=a.venue_id ORDER BY a.alias').fetchall()
self.assertEqual(aliases, [('ACL+TINLAP', 'ACL'), ('ACL+TINLAP', 'TINLAP')])
metadata = json.loads(c.execute("SELECT metadata_json FROM source_records WHERE external_id='T78-1001'").fetchone()[0])
self.assertEqual(metadata['historical_event_scope']['event_year'], 1978)
self.assertEqual(c.execute('PRAGMA foreign_key_check').fetchall(), [])
+160
View File
@@ -0,0 +1,160 @@
"""Real 49-chapter snapshots compared with a separately frozen metadata audit."""
import copy
import gzip
import hashlib
import json
from pathlib import Path
import sqlite3
import tempfile
import unittest
from paper_atlas.collectors.springer_selected import (
BOOK, SOURCE, collect, parse_chapter, parse_toc, read_page, snapshot_index,
)
from paper_atlas.db.store import Store
from paper_atlas.ingestion.records import ingest_file
FIXTURE = Path(__file__).parent/'fixtures/springer-aistats1993-fixture.json.gz'
class SpringerSelectedTests(unittest.TestCase):
@classmethod
def setUpClass(cls):
raw = FIXTURE.read_bytes()
if hashlib.sha256(raw).hexdigest() != '94028fd37080f9d8027e5790e379cc151ee6eab17ed0d1dcc0f59e6e75f9d4d0':
raise AssertionError('Fixed source fixture differs')
cls.fixture = json.loads(gzip.decompress(raw))
def snapshots(self, root):
for group in ['toc','chapters']:
folder = root/group
folder.mkdir()
for name, text in self.fixture[group].items():
(folder/name).write_text(text)
return {'toc_snapshots':root/'toc','chapter_snapshots':root/'chapters'}
def test_all49_original_fields_against_independent_audit(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
report = collect(root/'out', **self.snapshots(root))
manifest, = report['files']
rows = [json.loads(s) for s in Path(manifest['file']).read_text().splitlines()]
self.assertEqual(len(rows), 49)
self.assertEqual(manifest['status'], 'partial')
self.assertEqual(manifest['missing_abstract_count'], 0)
self.assertTrue(manifest['excluded_materials'])
self.assertTrue(all(x['title'] == 'Front Matter' for x in manifest['excluded_materials']))
for row, expected in zip(rows, self.fixture['expected']):
for field in ['title','abstract']:
self.assertEqual(row[field], expected[field])
self.assertEqual(row['identifiers'], {'doi':expected['doi']})
self.assertEqual(row['submission_identifiers'], [{'scheme':'publication_doi','value':expected['doi']}])
self.assertEqual(row['external_id'], expected['doi'])
self.assertEqual(row['metadata']['authors_citation_raw'], expected['authors_citation_raw'])
self.assertEqual(row['authors'], [{'family':s.split(',',1)[0].strip(), 'given':s.split(',',1)[1].strip()} for s in expected['authors_citation_raw']])
self.assertEqual(row['metadata']['first_page'], expected['first_page'])
self.assertEqual(row['metadata']['last_page'], expected['last_page'])
self.assertEqual((row['year'],row['metadata']['bibliographic_year']), (1993,1994))
self.assertEqual(row['track'], 'selected_volume')
self.assertEqual(row['event_key'], 'aistats-1993-selected-volume-1994')
self.assertNotIn('decision_date', row)
self.assertIn('original 1993 review decision not supplied', row['raw_decision'])
for e in [row['metadata']['source_evidence'], *row['metadata']['scope_evidence']]:
self.assertEqual(hashlib.sha256((root/'out'/e['file']).read_bytes()).hexdigest(), e['sha256'])
self.assertFalse(report['database_written'])
with self.assertRaises(FileExistsError):
collect(root/'out', toc_snapshots=root/'toc', chapter_snapshots=root/'chapters')
def test_native_history_namespaces_and_idempotent_import(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
report = collect(root/'out', **self.snapshots(root))
manifest, = report['files']
first = json.loads(Path(manifest['file']).read_text().splitlines()[0])
db = root/'sample.sqlite'
store = Store(db)
pid, rid = store.record('prior_public','earlier','https://example.org/earlier',first['title'],first['abstract'],first['authors'])
store.decision(pid,rid,'AISTATS',1993,'main','earlier','https://example.org/earlier','rejected','original public rejection')
# Explicitly verified work identity; the short title alone must not
# force a merge or attach this publication DOI to the old attempt.
store.conn.execute('INSERT INTO identifiers VALUES(?,?,?)', ('doi',first['identifiers']['doi'],pid))
store.conn.commit()
old = store.conn.execute('SELECT * FROM decisions').fetchall()
store.conn.close()
ingest_file(db, manifest['file'])
ingest_file(db, manifest['file'])
with sqlite3.connect(db) as c:
self.assertEqual(c.execute('SELECT * FROM decisions WHERE status=\'rejected\'').fetchall(), [tuple(r) for r in old])
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0], 49)
self.assertEqual(c.execute('SELECT count(*) FROM submissions').fetchone()[0], 50)
self.assertEqual(c.execute('SELECT count(*) FROM decisions').fetchone()[0], 50)
self.assertEqual(c.execute('SELECT e.year,e.track,e.event_key FROM editions e ORDER BY e.id').fetchall(), [(1993,'main',''),(1993,'selected_volume','aistats-1993-selected-volume-1994')])
self.assertEqual(c.execute('SELECT count(*) FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE t.namespace=?', (SOURCE+':publication_format',)).fetchone()[0], 49)
self.assertEqual(c.execute('SELECT count(*) FROM submission_identifiers WHERE scheme=\'publication_doi\'').fetchone()[0], 49)
self.assertIsNone(c.execute("SELECT 1 FROM submission_identifiers si JOIN submissions s ON s.id=si.submission_id JOIN editions e ON e.id=s.edition_id WHERE e.track='main'").fetchone())
def test_short_unanchored_title_keeps_identity_unconfirmed(self):
with tempfile.TemporaryDirectory() as tmp:
store = Store(Path(tmp)/'identity.sqlite')
title = 'Statistical strategy: step 1'
authors = [{'given':'D. J.','family':'Hand'}]
old, _ = store.record('prior_public','earlier','https://example.org/old',title,'Same abstract',authors)
new, _ = store.record(SOURCE,BOOK+'_1','https://link.springer.com/chapter/'+BOOK+'_1',title,'Same abstract',authors,{'doi':BOOK+'_1'})
self.assertNotEqual(old, new)
self.assertEqual(store.conn.execute('SELECT count(*) FROM match_candidates WHERE method=\'exact_title_unconfirmed\'').fetchone()[0], 1)
store.conn.close()
def test_receipt_hash_path_redirect_and_content_type_guards(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
self.snapshots(root)
index = snapshot_index(root/'chapters')
url = 'https://link.springer.com/chapter/'+BOOK+'_1'
self.assertTrue(read_page(index,url)[0])
for key, value in [('sha256','0'*64),('file','../escape.html'),('final_url','https://example.org/chapter'),('http_status',403),('headers',{'Content-Type':'application/pdf'})]:
changed = copy.deepcopy(index)
changed[url][1][key] = value
with self.subTest(key=key), self.assertRaises((ValueError,KeyError)):
read_page(changed,url)
changed = copy.deepcopy(index)
changed[url][1]['final_url'] = url+'?page=2'
with self.assertRaises(ValueError):
read_page(changed,url)
def test_missing_or_duplicate_snapshot_stops_collection(self):
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
args = self.snapshots(root)
path = root/'chapters/receipts.json'
d = json.loads(path.read_bytes())
original = copy.deepcopy(d)
d['responses'].pop()
path.write_text(json.dumps(d))
with self.assertRaises(ValueError):
collect(root/'out', **args)
self.assertFalse((root/'out').exists())
original['responses'].append(original['responses'][0])
path.write_text(json.dumps(original))
with self.assertRaises(ValueError):
snapshot_index(root/'chapters')
def test_book_doi_year_and_duplicate_citation_fields_reject_drift(self):
html = self.fixture['chapters']['chapter-01.html']
for key, value in [('citation_doi',BOOK+'_2'),('citation_inbook_title','Another Book'),('citation_publication_date','1993')]:
import re
changed, count = re.subn(r'(<meta[^>]*name="'+key+r'"[^>]*content=")[^"]*', lambda m:m[1]+value, html)
self.assertEqual(count, 1)
with self.subTest(key=key), self.assertRaises(ValueError):
parse_chapter(changed, BOOK+'_1')
with self.assertRaises(ValueError):
parse_chapter(html+'<meta name="citation_doi" content="'+BOOK+'_1">', BOOK+'_1')
def test_missing_abstract_is_explicit_and_does_not_use_other_page_text(self):
html = self.fixture['chapters']['chapter-01.html'].replace('id="Abs1-content"','id="not-an-abstract"')
self.assertIsNone(parse_chapter(html, BOOK+'_1')['abstract'])
def test_toc_ignores_frontmatter_but_rejects_duplicate_publications(self):
html = self.fixture['toc']['springer-toc1.html']
self.assertEqual(len(parse_toc(html)), 17)
with self.assertRaises(ValueError):
parse_toc(html+html)