91 lines
6.7 KiB
Python
91 lines
6.7 KiB
Python
"""Read-only command-line queries for the paper index."""
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import argparse
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import json
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import sqlite3
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from pathlib import Path
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def main():
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parser = argparse.ArgumentParser()
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parser.add_argument('--db', required=True)
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parser.add_argument('--query', help='SQLite FTS5 query over title and abstract')
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parser.add_argument('--paper',type=int,help='Paper ID; include sources, tags and submission history')
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parser.add_argument('--tag', help='Filter as namespace=value, e.g. arxiv:category=cs.AI')
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parser.add_argument('--venue', help='Conference acronym')
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parser.add_argument('--year', type=int)
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parser.add_argument('--track',help='Exact track, e.g. main, findings, workshop')
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parser.add_argument('--status', choices=['accepted','rejected','desk_rejected','withdrawn','under_review','unknown'])
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parser.add_argument('--limit', type=int, default=20)
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parser.add_argument('--stats', action='store_true')
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args = parser.parse_args()
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conn = sqlite3.connect(Path(args.db).resolve().as_uri()+'?mode=ro', uri=True)
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conn.row_factory = sqlite3.Row
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conn.execute('BEGIN') # One consistent read snapshot while ingestion continues.
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if args.stats:
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result = {name:conn.execute('SELECT count(*) FROM '+name).fetchone()[0] for name in ('papers','source_records','submissions','decisions','tags','match_candidates')}
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result['records_by_source'] = [dict(r) for r in conn.execute('SELECT s.name,count(r.id) AS imported_records FROM sources s LEFT JOIN source_records r ON r.source_id=s.id GROUP BY s.id ORDER BY s.name')]
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result['decision_events_by_status'] = [dict(r) for r in conn.execute('SELECT status,count(*) AS events FROM decisions GROUP BY status')]
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result['coverage'] = [dict(r) for r in conn.execute('SELECT status,count(*) AS sources FROM edition_sources GROUP BY status')]
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result['runs'] = [dict(r) for r in conn.execute('SELECT * FROM ingest_runs ORDER BY id DESC LIMIT 10')]
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else:
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where = []; params = []
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if args.paper is not None:
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where.append('p.id=?'); params.append(args.paper)
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if args.query:
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where.append('p.id IN (SELECT rowid FROM papers_fts WHERE papers_fts MATCH ?)'); params.append(args.query)
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if args.tag:
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namespace,value = args.tag.split('=',1)
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where.append('EXISTS(SELECT 1 FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE pt.paper_id=p.id AND t.namespace=? AND t.value=?)'); params.extend([namespace,value])
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if args.venue or args.year or args.status or args.track:
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clause = ['1=1']
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if args.venue:
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if conn.execute("SELECT 1 FROM sqlite_master WHERE type='table' AND name='venue_aliases'").fetchone():
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clause.append('(v.acronym=? COLLATE NOCASE OR EXISTS(SELECT 1 FROM venue_aliases va WHERE va.venue_id=v.id AND va.alias=? COLLATE NOCASE))'); params.extend([args.venue,args.venue])
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else:
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clause.append('v.acronym=? COLLATE NOCASE');params.append(args.venue)
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if args.track:
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clause.append('e.track=?');params.append(args.track)
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if args.year:
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clause.append('e.year=?'); params.append(args.year)
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if args.status:
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latest='''EXISTS (
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SELECT 1 FROM decisions d WHERE d.submission_id=s.id AND d.status=?
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AND NOT EXISTS (
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SELECT 1 FROM decisions newer WHERE newer.submission_id=d.submission_id
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AND (newer.observed_at,COALESCE(newer.decision_date,newer.observed_at),newer.id)
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> (d.observed_at,COALESCE(d.decision_date,d.observed_at),d.id)
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)
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)'''
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clause.append('(NOT EXISTS(SELECT 1 FROM decisions d WHERE d.submission_id=s.id) OR '+latest+')' if args.status=='unknown' else latest); params.append(args.status)
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where.append('p.id IN (SELECT s.paper_id FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id WHERE '+' AND '.join(clause)+')')
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sql = 'SELECT p.* FROM papers p'+(' WHERE '+' AND '.join(where) if where else '')+' ORDER BY p.id LIMIT ?'
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params.append(max(1,min(args.limit,200)))
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result = []
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for row in conn.execute(sql,params):
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paper = dict(row)
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paper['authors'] = json.loads(paper.pop('authors_json'))
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paper['identifiers'] = [dict(r) for r in conn.execute('SELECT scheme,value FROM identifiers WHERE paper_id=?',(row['id'],))]
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if args.paper is not None:
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paper['tags'] = [dict(r) for r in conn.execute('SELECT t.namespace,t.value,pt.evidence_key FROM paper_tags pt JOIN tags t ON t.id=pt.tag_id WHERE pt.paper_id=?',(row['id'],))]
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paper['sources'] = [dict(r) for r in conn.execute('SELECT s.name,r.external_id,r.url,r.title,r.abstract,r.retrieved_at FROM source_records r JOIN sources s ON s.id=r.source_id WHERE r.paper_id=?',(row['id'],))]
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submissions = []
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for sub in conn.execute('SELECT s.id,s.source_submission_id,s.submitted_at,v.acronym,e.year,e.track FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id WHERE s.paper_id=? ORDER BY e.year,s.id',(row['id'],)):
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submission = dict(sub)
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submission['decisions'] = []
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for d in conn.execute('SELECT id,status,raw_value,evidence_url,observed_at,decision_date FROM decisions WHERE submission_id=? ORDER BY observed_at,COALESCE(decision_date,observed_at),id',(sub['id'],)):
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decision=dict(d)
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if conn.execute("SELECT 1 FROM sqlite_master WHERE type='table' AND name='decision_sources'").fetchone():
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decision['sources']=[dict(r) for r in conn.execute('SELECT s.name,r.external_id,ds.source_decision_id FROM decision_sources ds JOIN source_records r ON r.id=ds.source_record_id JOIN sources s ON s.id=r.source_id WHERE ds.decision_id=?',(d['id'],))]
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submission['decisions'].append(decision)
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if conn.execute("SELECT 1 FROM sqlite_master WHERE type='table' AND name='submission_sources'").fetchone():
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submission['sources']=[dict(r) for r in conn.execute('SELECT so.name,r.external_id,ss.source_submission_id FROM submission_sources ss JOIN source_records r ON r.id=ss.source_record_id JOIN sources so ON so.id=r.source_id WHERE ss.submission_id=?',(sub['id'],))]
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submissions.append(submission)
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paper['submissions'] = submissions
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result.append(paper)
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print(json.dumps(result,ensure_ascii=False,indent=2))
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conn.close()
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if __name__ == '__main__':
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main()
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