"""Libpq service connections; credentials never belong in CLI arguments.""" from collections.abc import Mapping import re SEARCH_VECTOR = "to_tsvector('english'::regconfig,coalesce(title,'') || ' ' || coalesce(abstract,''))" def driver(): try: import psycopg except ImportError as error: raise RuntimeError('Install paper-atlas[postgres] on the approved remote runner') from error return psycopg def connect(service, *, readonly=False): if not re.fullmatch(r'[A-Za-z0-9_-]+', service): raise ValueError('Use a libpq service name, never a password or connection URL') connection = driver().connect(service=service, connect_timeout=15, autocommit=True, application_name='paper-atlas') connection.execute("SET timezone='UTC'") connection.execute("SET lock_timeout='5s'") connection.execute("SET work_mem='2MB'") connection.execute("SET maintenance_work_mem='16MB'") connection.execute('SET max_parallel_workers_per_gather=0') connection.execute('SET max_parallel_maintenance_workers=0') if readonly: connection.execute('BEGIN ISOLATION LEVEL REPEATABLE READ READ ONLY') return connection class Row(Mapping): """The small mapping/positional interface used by existing query output.""" def __init__(self, columns, values): self.columns, self.values = columns, values def __getitem__(self, key): return self.values[key if isinstance(key, int) else self.columns.index(key)] def __iter__(self): return iter(self.columns) def __len__(self): return len(self.columns) def row_factory(cursor): columns = [column.name for column in cursor.description] if cursor.description else [] return lambda values: Row(columns, values) class ReadConnection: postgres = True def __init__(self, service, schema=None): if schema is not None and not re.fullmatch(r'[a-z][a-z0-9_]{0,35}', schema): raise ValueError('Invalid schema name') self.connection = connect(service, readonly=True) from paper_atlas.postgres.schema import quote if schema is not None: self.connection.execute('SET LOCAL search_path TO ' + quote(schema) + ',pg_catalog') self.connection.row_factory = row_factory if not self.has_table('papers'): self.close() raise RuntimeError('PostgreSQL publication is not ready in the configured search_path') def execute(self, query, params=()): # All caller SQL is static; user values are always bound parameters. if 'sqlite_master' in query: match = re.search(r"name='([a-z_]+)'", query) if not match or match[1] not in ('decision_sources', 'submission_sources', 'venue_aliases'): raise ValueError('Unsupported legacy table lookup') return self.connection.execute('''SELECT 1 FROM information_schema.tables WHERE table_schema=current_schema() AND table_name=%s''', (match[1],)) return self.connection.execute(query.replace('?', '%s'), params) def has_table(self, name): return bool(self.connection.execute('''SELECT 1 FROM information_schema.tables WHERE table_schema=current_schema() AND table_name=%s''', (name,)).fetchone()) def close(self): self.connection.close()