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Author SHA1 Message Date
codex-bot 8e82742900 Recognize explicit ICLR workshop decisions with scope guards
Metadata integrity checks / metadata (push) Successful in 2m40s
2026-11-08 04:18:09 +08:00
codex-bot f327861a00 Hold untitled public assertions and retain explicit withdrawals
Metadata integrity checks / metadata (push) Successful in 1m17s
2026-11-08 03:23:25 +08:00
15 changed files with 196 additions and 630 deletions
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@@ -53,11 +53,8 @@ jobs:
subprocess.run([python,'-I','-B','-m','paper_atlas','import','arxiv','--help'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-m','paper_atlas','import','arxiv','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','backfill','--help'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','backfill','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','public-openreview','--help'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-m','paper_atlas','audit','public-openreview','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','coverage','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','histories','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-c','from paper_atlas.postgres.writer import PostgresStore, WriteConnection'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-c','from paper_atlas.postgres.writer import PostgresStore, WriteConnection'],cwd=outside,check=True)
smoke = "from paper_atlas.db.store import Store; from paper_atlas.config import DEFAULT_REGISTRY; import json; assert {'COLM','MM','MLSys'} <= {v['acronym'] for v in json.loads(DEFAULT_REGISTRY.read_text())['venues']}; s=Store('installed.sqlite'); s.conn.close()" smoke = "from paper_atlas.db.store import Store; from paper_atlas.config import DEFAULT_REGISTRY; import json; assert {'COLM','MM','MLSys'} <= {v['acronym'] for v in json.loads(DEFAULT_REGISTRY.read_text())['venues']}; s=Store('installed.sqlite'); s.conn.close()"
subprocess.run([python,'-I','-B','-c',smoke],cwd=outside,check=True) subprocess.run([python,'-I','-B','-c',smoke],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','query','--db','installed.sqlite','--stats'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-m','paper_atlas','query','--db','installed.sqlite','--stats'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','histories','--db','installed.sqlite','--examples','0'],cwd=outside,check=True)
PY PY
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@@ -51,8 +51,7 @@ PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas query --pg-service fo
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas query --pg-service foundry-research --paper 123 PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas query --pg-service foundry-research --paper 123
# 列出全部目标会议,包括尚未入库的项目 # 列出全部目标会议,包括尚未入库的项目
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas coverage \ paper-atlas coverage --db /data/paper-index/papers.sqlite \
--pg-service foundry-research --pg-schema research \
--out /data/paper-index/collected/venue-coverage-current.json --out /data/paper-index/collected/venue-coverage-current.json
# 采集与导入分开;这里只采集到独立文件 # 采集与导入分开;这里只采集到独立文件
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@@ -93,6 +93,12 @@ paper-atlas audit public-openreview --db /data/paper-index/papers.sqlite \
输出按会议、届次及 main、position、datasets_benchmarks 分文件。workshop 默认进入单独的 held 清单;有明确 workshop 名称时可通过 `--include-workshops` 单列采集,不合并到主会。Retraction、未映射的轨道或负面标签也保留在 `held-records.jsonl`,不强改为 Reject 或 Withdrawn。当前决定表没有独立 retracted 状态,因此撤回发表记录仍需后续专门建模。 输出按会议、届次及 main、position、datasets_benchmarks 分文件。workshop 默认进入单独的 held 清单;有明确 workshop 名称时可通过 `--include-workshops` 单列采集,不合并到主会。Retraction、未映射的轨道或负面标签也保留在 `held-records.jsonl`,不强改为 Reject 或 Withdrawn。当前决定表没有独立 retracted 状态,因此撤回发表记录仍需后续专门建模。
`parser_version=2` 还会将明确负面标签但标题缺失、空白或 null 的记录放入 `held-records.jsonl`,保留原始状态、forum ID、固定来源版本和行号;不制造标题或导入不可识别的论文,也不让这一条缺失阻断其他可用记录。held 文件哈希与各原因数量保存在 inventory;非文本标题、错误身份、冲突届次和哈希不符仍使整批失败。旧年 ICLR 镜像的明确 `Withdraw` 标签归为 `withdrawn`,`Workshop`、`Poster Workshop`、`Oral Workshop` 均不作为拒稿。采集文件与导入主库仍是两个独立步骤。
`parser_version=3` 增加五组已核实身份的 ICLR workshop 标签:2024 ME-FoMo / GenAI4DM 的 Withdrawn Submission、2025 AgenticAI 的 Reject / LMRL 的 Withdrawn Submission,以及 2026 LLM Reasoning 的 Withdrawn Submission。仅在 `--include-workshops` 下输出,并分别保存 `workshop_me_fomo`、`workshop_genai4dm`、`workshop_agenticai`、`workshop_lmrl`、`workshop_llm_reasoning`;默认仍暂存。标签必须与原文件会议、年份和原始 workshop track 一致,错年/错会议使采集失败,错轨道单独暂存,未知标签继续待核查,不用宽泛的 Reject/Withdraw 正则猜测。
[OpenReview 官方 ICLR 活动目录](https://openreview.net/venue?id=ICLR.cc) 确认上述独立 workshop 身份;[ME-FoMo 2024](https://sites.google.com/view/me-fomo2024/call-for-papers)、[GenAI4DM 2024](https://sites.google.com/view/genai4dm-iclr2024)、[AgenticAI 2025](https://iclragenticai.github.io/) 和 [LLM Reasoning 2026](https://sites.google.com/view/iclr-2026-llmreasoning) 的活动网站也提供对应投稿入口。输出在 metadata 保存 `workshop_venueid` 和身份目录证据,决定仍只标为固定镜像的公开分类断言,保留原始标签、forum、来源行号与哈希,不声称核验原始决定签名。2026-11-08 核查时部分原站记录页要求浏览器验证;身份目录和主办方入口可读,不代表逐篇原始决定已可访问,也不外推其他 workshop 的公开政策。采集后仍须经过 PostgreSQL 身份/决定冲突预检、串行导入和独立验收。
该来源明确标记为 `curated_public_status_assertion`:保留源 commit、文件哈希、行号、原标签和 forum ID,不声称已核验原始 PC 签名。只保存标题、摘要、公开作者名、关键词、领域、索引与决定来源,不缓存镜像中的个人资料、邮箱、性别、评审内容或 PDF。所有输出清单均为 partial;盘点中的零条记录仅描述这个固定镜像。 该来源明确标记为 `curated_public_status_assertion`:保留源 commit、文件哈希、行号、原标签和 forum ID,不声称已核验原始 PC 签名。只保存标题、摘要、公开作者名、关键词、领域、索引与决定来源,不缓存镜像中的个人资料、邮箱、性别、评审内容或 PDF。所有输出清单均为 partial;盘点中的零条记录仅描述这个固定镜像。
入库前审计核验文件哈希、数量、轨道和来源声明,并用真实 forum ID 对比同届同轨道已有投稿。存在不同决定时阻止整批导入,交由来源和时序核查;另一会议的后续录用属于独立投稿历史,不构成该次拒稿的冲突。同一 forum 的镜像不新增投稿事件,但论文实体的跨平台去重仍须在全量结束后核验。审计通过的报告包含带 SHA-256 的导入队列;应在单写入维护锁下及时串行导入,主库变化后重新审计。 入库前审计核验文件哈希、数量、轨道和来源声明,并用真实 forum ID 对比同届同轨道已有投稿。存在不同决定时阻止整批导入,交由来源和时序核查;另一会议的后续录用属于独立投稿历史,不构成该次拒稿的冲突。同一 forum 的镜像不新增投稿事件,但论文实体的跨平台去重仍须在全量结束后核验。审计通过的报告包含带 SHA-256 的导入队列;应在单写入维护锁下及时串行导入,主库变化后重新审计。
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@@ -97,16 +97,13 @@ paper-atlas audit arxiv-tags --db /data/paper-index/papers.sqlite \
采集文件、已入库的来源记录和去重论文实体是不同的计数。来源可能覆盖同一篇论文,同一篇论文也可能有多次投稿;不能把各批文件数量相加作为独立论文总数。实时统计与覆盖报告使用: 采集文件、已入库的来源记录和去重论文实体是不同的计数。来源可能覆盖同一篇论文,同一篇论文也可能有多次投稿;不能把各批文件数量相加作为独立论文总数。实时统计与覆盖报告使用:
```sh ```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas query --pg-service foundry-research --pg-schema research --stats paper-atlas query --db /data/paper-index/papers.sqlite --stats
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas coverage \ paper-atlas coverage --db /data/paper-index/papers.sqlite \
--pg-service foundry-research --pg-schema research \
--out /data/paper-index/collected/venue-coverage-current.json --out /data/paper-index/collected/venue-coverage-current.json
``` ```
manifest 和采集器状态清单用于确认文件是否齐全及是否缺摘要;`ingest_runs` 和协调器日志用于确认主库导入是否成功。官方程序、书目目录和公开投稿快照分别保留,未出现在某份清单不等于被拒稿;第三方快照也不能代表平台当前全量状态。代码测试成功不能代替最终全库去重、完整性和逐届覆盖核验。 manifest 和采集器状态清单用于确认文件是否齐全及是否缺摘要;`ingest_runs` 和协调器日志用于确认主库导入是否成功。官方程序、书目目录和公开投稿快照分别保留,未出现在某份清单不等于被拒稿;第三方快照也不能代表平台当前全量状态。代码测试成功不能代替最终全库去重、完整性和逐届覆盖核验。
`coverage` 的所有计数来自同一个只读快照。`latest_observed_status_counts` 按每次投稿的最新观察决定统计,`decision_observation_counts` 保留所有历史观察;重复来源不增加投稿数,缺少决定的投稿计入最新状态 unknown,但不凭空制造 unknown 决定。`source_record_counts` 统计来源在该届次的实际记录与缺摘要数,和 `sources` 中逐清单的预期/导入数量分开;身份补充清单与原始论文集清单可以描述同一条记录。来源缺摘要与论文实体从其他来源获得摘要也分别报告。报告仍将历史覆盖标为待独立审计,不能用某个清单 complete 或没有拒稿记录推断全会议覆盖。
当前代码与合并状态以 [Pull Requests](https://gitea.entroia.com/Zayden-Jung/paper-atlas/pulls) 为准;CI 结果以对应提交的 Actions 检查为准。工作分支交付后等待用户手动合并。合并代码不自动部署、不自动启动采集,也不代表数据批次已完成。 当前代码与合并状态以 [Pull Requests](https://gitea.entroia.com/Zayden-Jung/paper-atlas/pulls) 为准;CI 结果以对应提交的 Actions 检查为准。工作分支交付后等待用户手动合并。合并代码不自动部署、不自动启动采集,也不代表数据批次已完成。
## 修正已有 PMLR 投稿的轨道 ## 修正已有 PMLR 投稿的轨道
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@@ -79,41 +79,22 @@ paper-atlas maintain merge --db /data/paper-index/samples/example.sqlite \
## 4. 查询与分析前检查 ## 4. 查询与分析前检查
```sh ```sh
paper-atlas query --pg-service foundry-research --query '"language model"' --limit 20 paper-atlas query --db /data/paper-index/papers.sqlite --query '"language model"' --limit 20
paper-atlas query --pg-service foundry-research --tag arxiv:category=cs.AI paper-atlas query --db /data/paper-index/papers.sqlite --tag arxiv:category=cs.AI
paper-atlas query --pg-service foundry-research --venue ICLR --year 2025 --status rejected paper-atlas query --db /data/paper-index/papers.sqlite --venue ICLR --year 2025 --status rejected
paper-atlas query --pg-service foundry-research --paper 123 paper-atlas query --db /data/paper-index/papers.sqlite --paper 123
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas coverage \ paper-atlas coverage --db /data/paper-index/papers.sqlite --out /data/paper-index/collected/coverage.json
--pg-service foundry-research --pg-schema research --out /data/paper-index/collected/coverage.json
``` ```
`--status rejected` 筛选某次投稿的最新已知决定。它并不表示论文在所有会议均未录用;分析转投情况时查看该论文的完整投稿历史。年份表示会议届次,观察时间和决定日期分别保留。 `--status rejected` 筛选某次投稿的最新已知决定。它并不表示论文在所有会议均未录用;分析转投情况时查看该论文的完整投稿历史。年份表示会议届次,观察时间和决定日期分别保留。
覆盖报告使用只读一致性快照,标明实际数据库和 schema,并列出零入库目标与注册表外的已入库会议。逐届、逐 track 分别列出最新观察状态的投稿数、全部决定观察数、各来源记录数,以及来源摘要和论文实体摘要的缺失数。摘要缺失指 NULL 或空字符串;有文字不代表内容已经完整核验。同一来源的多个清单 URL 可以重叠,不能把清单计数相加当作来源总量;零条拒稿也不证明该会议没有公开拒稿。SQLite 样本仍可显式使用 `--db`,生产报告应查询当前 PostgreSQL。
例如,查找在 ICLR 有拒稿记录、但在其他已知投稿中已有录用的论文: 例如,查找在 ICLR 有拒稿记录、但在其他已知投稿中已有录用的论文:
```sh ```sh
paper-atlas query --pg-service foundry-research \ paper-atlas query --db /data/paper-index/papers.sqlite \\
--venue ICLR --status rejected --outcome accepted --venue ICLR --status rejected --outcome accepted
``` ```
`known_acceptances` 列出目前仍为录用状态的各次投稿及会议、年份、track 和决定证据,`publication_outcome` 汇总为 accepted 或 no_known_acceptance。汇总会检查所有会议和 track,不把某次拒稿覆盖到整篇论文;同一次投稿的后续撤稿也会更新该次状态并保留原决定。no_known_acceptance 只表示现有来源中没有查到录用,不能称为“从未录用”。 `known_acceptances` 列出目前仍为录用状态的各次投稿及会议、年份、track 和决定证据,`publication_outcome` 汇总为 accepted 或 no_known_acceptance。汇总会检查所有会议和 track,不把某次拒稿覆盖到整篇论文;同一次投稿的后续撤稿也会更新该次状态并保留原决定。no_known_acceptance 只表示现有来源中没有查到录用,不能称为“从未录用”。
`--stats` 中 papers 是当前规则下的论文实体数;source_records 是来源记录数;decisions 是决定观察数。一个投稿可能有多个来源和多条观察,不能相加当作论文数。 `--stats` 中 papers 是当前规则下的论文实体数;source_records 是来源记录数;decisions 是决定观察数。一个投稿可能有多个来源和多条观察,不能相加当作论文数。
## 5. 投稿历史关系审计
```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas audit histories \
--pg-service foundry-research --pg-schema research --examples 20 \
--out /data/paper-index/collected/history-audit.json
```
使用一个只读一致性快照,区分论文实体、投稿和决定观察;分别统计同次投稿曾出现负面与录用观察、不同投稿共存负面与当前已知录用、不同会议之间的共存。workshop/main 是不同 track,属于同一会议时不算跨会议;会议别名也不会增加一个会议。当前已知录用使用与 `query --outcome` 相同的“每次投稿最新观察”规则,后续撤稿的该次投稿不再算当前录用,但旧录用决定仍保留。
报告不凭观察时间、届次年份或行顺序断言“拒稿发生在录用之前”。样例保留真实 `decision_date`、`observed_at`、原始标签、证据 URL 和决定来源,供进一步核查;日期缺失仍保持未知。`negative` 统计包含 rejected、desk_rejected 和 withdrawn,其原始状态不互相替换。
总数覆盖快照内全部投稿,样例由 `--examples` 限定为 0–100 篇;每篇最多展示 20 次投稿、每次最多 50 条决定、每条决定最多 100 个来源,并明确标记截断。样例优先保留负面/录用的不同投稿对。四项来源关系检查报告缺失关联和来源论文归属不一致,不自动修复。
这些统计依赖现有论文身份关联,不证明实体合并正确,也不证明原始决定签名、公开拒稿全集、标签类型或最终全库去重已完成。SQLite 独立样本可使用 `--db`;冻结备份不能代表当前 PostgreSQL 的历史情况。
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@@ -1,136 +1,45 @@
"""Describe imported venue coverage without implying a complete census.""" """Show every target venue, including those with no imported records."""
import argparse import argparse
from collections import defaultdict from paper_atlas.config import DEFAULT_REGISTRY
import json import json
from pathlib import Path from pathlib import Path
import sqlite3 import sqlite3
from paper_atlas.config import DEFAULT_REGISTRY
from paper_atlas.db.backend import database_arguments, open_read_connection
from paper_atlas.db.submissions import timestamp from paper_atlas.db.submissions import timestamp
from paper_atlas.querying import LATEST_DECISION
STATUSES = ('accepted', 'rejected', 'desk_rejected', 'withdrawn', 'under_review', 'unknown') def report(db,registry):
registry=json.loads(Path(registry).read_text());targets=registry['venues']
names=[row['acronym'].casefold() for row in targets]
def _status_counts(connection, *, latest): if len(names)!=len(set(names)):raise ValueError('Duplicate target venue')
if latest: scope='(v.acronym=? COLLATE NOCASE OR EXISTS(SELECT 1 FROM venue_aliases a WHERE a.venue_id=v.id AND a.alias=? COLLATE NOCASE))'
query = '''SELECT s.edition_id,COALESCE(d.status,'unknown') AS status,count(*) AS count c=sqlite3.connect(Path(db).resolve().as_uri()+'?mode=ro',uri=True);c.row_factory=sqlite3.Row
FROM submissions s LEFT JOIN decisions d ON d.submission_id=s.id AND ''' + LATEST_DECISION
else:
query = '''SELECT s.edition_id,COALESCE(d.status,'unknown') AS status,count(*) AS count
FROM submissions s JOIN decisions d ON d.submission_id=s.id'''
counts = defaultdict(dict)
for row in connection.execute(query + " GROUP BY s.edition_id,COALESCE(d.status,'unknown')"):
counts[row[0]][row[1]] = row[2]
return counts
def report(db, registry, *, pg_service=None, pg_schema=None):
started_at = timestamp()
registry = json.loads(Path(registry).read_text())
targets = registry['venues']
names = [row['acronym'].casefold() for row in targets]
if len(names) != len(set(names)):
raise ValueError('Duplicate target venue')
scope = '''(lower(v.acronym)=lower(?) OR EXISTS(
SELECT 1 FROM venue_aliases a WHERE a.venue_id=v.id AND lower(a.alias)=lower(?)))'''
connection = open_read_connection(db, pg_service=pg_service, pg_schema=pg_schema)
if not pg_service:
connection.row_factory = sqlite3.Row
try: try:
if pg_service: c.execute('BEGIN');venues=[]
identity = connection.execute('SELECT current_database(),current_schema()').fetchone()
database, schema = identity[0], identity[1]
else:
database, schema = str(Path(db).resolve()), None
latest = _status_counts(connection, latest=True)
observations = _status_counts(connection, latest=False)
# Aggregate the paper join once for the whole snapshot. Repeating it
# for each registry target caused repeated scans on the production DB.
edition_counts = {}
for row in connection.execute('''SELECT s.edition_id,count(s.id) AS submissions,
count(DISTINCT s.paper_id) AS papers,
count(DISTINCT CASE WHEN p.abstract IS NULL OR p.abstract='' THEN s.paper_id END)
AS papers_without_abstract_text
FROM submissions s LEFT JOIN papers p ON p.id=s.paper_id GROUP BY s.edition_id'''):
entry = dict(row)
edition_counts[entry.pop('edition_id')] = entry
source_counts = defaultdict(list)
for row in connection.execute('''SELECT s.edition_id,so.name AS source,
count(DISTINCT sr.id) AS source_records,
count(DISTINCT CASE WHEN sr.abstract IS NULL OR sr.abstract='' THEN sr.id END)
AS source_records_without_abstract_text
FROM submission_sources ss JOIN submissions s ON s.id=ss.submission_id
JOIN source_records sr ON sr.id=ss.source_record_id JOIN sources so ON so.id=sr.source_id
GROUP BY s.edition_id,so.name ORDER BY s.edition_id,so.name'''):
entry = dict(row)
source_counts[entry.pop('edition_id')].append(entry)
venues, covered_venue_ids = [], set()
for target in targets: for target in targets:
acronym = target['acronym'] acronym=target['acronym'];params=(acronym,acronym)
params = (acronym, acronym) editions=[]
editions = [] for row in c.execute('SELECT e.id,v.acronym AS canonical_venue,e.year,e.track,count(s.id) AS submissions,count(DISTINCT s.paper_id) AS papers FROM editions e JOIN venues v ON v.id=e.venue_id LEFT JOIN submissions s ON s.edition_id=e.id WHERE '+scope+' GROUP BY e.id ORDER BY e.year,e.track',params):
for row in connection.execute('''SELECT e.id,v.id AS venue_id,v.acronym AS canonical_venue, edition=dict(row)
e.year,e.track FROM editions e JOIN venues v ON v.id=e.venue_id edition['sources']=[dict(source) for source in c.execute('SELECT so.name,es.status,es.expected_count,es.imported_count,es.list_url,es.last_success_at,es.last_error FROM edition_sources es JOIN sources so ON so.id=es.source_id WHERE es.edition_id=? ORDER BY so.name',(row['id'],))]
WHERE ''' + scope + '''
ORDER BY e.year,e.track,v.acronym''', params):
edition = dict(row)
edition.update(edition_counts.get(row['id'], {
'submissions': 0, 'papers': 0, 'papers_without_abstract_text': 0}))
covered_venue_ids.add(edition['venue_id'])
edition['latest_observed_status_counts'] = {status: latest[row['id']].get(status, 0) for status in STATUSES}
edition['decision_observation_counts'] = {status: observations[row['id']].get(status, 0) for status in STATUSES}
edition['source_record_counts'] = source_counts[row['id']]
edition['sources'] = [dict(source) for source in connection.execute('''SELECT so.name,
es.status,es.expected_count,es.imported_count,es.list_url,es.last_success_at,es.last_error
FROM edition_sources es JOIN sources so ON so.id=es.source_id
WHERE es.edition_id=? ORDER BY so.name,es.list_url''', (row['id'],))]
editions.append(edition) editions.append(edition)
totals = connection.execute('''SELECT count(s.id),count(DISTINCT s.paper_id) totals=c.execute('SELECT count(s.id),count(DISTINCT s.paper_id) FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id WHERE '+scope,params).fetchone()
FROM submissions s JOIN editions e ON e.id=s.edition_id venues.append({'acronym':acronym,'field':target['field'],'imported_submissions':totals[0],'distinct_papers':totals[1],
JOIN venues v ON v.id=e.venue_id WHERE ''' + scope, params).fetchone() 'history_status':'partial_history_pending_independent_audit' if totals[0] else 'no_imported_records',
venues.append({'acronym': acronym, 'field': target['field'], 'discovery_sources':target.get('discovery_sources',[]),'editions':editions})
'imported_submissions': totals[0], 'distinct_papers': totals[1], return {'checked_at':timestamp(),'target_venue_count':len(targets),'venues_with_imported_records':sum(bool(v['imported_submissions']) for v in venues),
'history_status': 'partial_history_pending_independent_audit' if totals[0] else 'no_imported_records', 'scope_note':registry['scope_note'],'interpretation':'All registry targets are listed. Edition source complete means that source file passed import checks; it does not prove full historical or abstract coverage. Papers can appear in multiple venues/years, so do not sum venue paper counts as a global total.',
'discovery_sources': target.get('discovery_sources', []), 'editions': editions}) 'venues':venues}
outside_registry = [dict(row) for row in connection.execute('''SELECT v.id AS venue_id, finally:c.close()
v.acronym,count(s.id) AS submissions,count(DISTINCT s.paper_id) AS papers
FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id
GROUP BY v.id,v.acronym ORDER BY v.acronym''') if row[0] not in covered_venue_ids]
return {'report_started_at': started_at, 'checked_at': timestamp(),
'engine': 'postgresql' if pg_service else 'sqlite', 'database': database, 'schema': schema,
'pg_service': pg_service, 'target_venue_count': len(targets),
'venues_with_imported_records': sum(bool(v['imported_submissions']) for v in venues),
'scope_note': registry['scope_note'],
'interpretation': 'All registry targets are listed, including zero imports. '
'Latest status counts use the latest observed decision for each attempt; decision observations retain history. '
'Source record totals are per source and edition, not per list URL; multiple list entries may describe overlapping records. '
'Missing abstract text means NULL or empty string; nonempty text does not prove a complete abstract. '
'An edition source marked complete is not a proof of complete conference history or public rejection coverage. '
'Zero imported rejections does not establish that no rejections are public. '
'Papers can appear in several venues/years; do not sum venue paper counts as a global total.',
'venues': venues, 'imported_venues_outside_registry': outside_registry}
finally:
connection.close()
def main(argv=None, *, prog=None): def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog) parser=argparse.ArgumentParser(prog=prog);parser.add_argument('--db',required=True)
database_arguments(parser) parser.add_argument('--registry',default=str(DEFAULT_REGISTRY));parser.add_argument('--out')
parser.add_argument('--registry', default=str(DEFAULT_REGISTRY)) args=parser.parse_args(argv);result=report(args.db,args.registry);text=json.dumps(result,ensure_ascii=False,indent=2)
parser.add_argument('--out')
args = parser.parse_args(argv)
result = report(args.db, args.registry, pg_service=args.pg_service, pg_schema=args.pg_schema)
text = json.dumps(result, ensure_ascii=False, indent=2)
if args.out: if args.out:
path = Path(args.out) path=Path(args.out);stage=path.with_suffix('.part');stage.write_text(text+'\n');stage.replace(path)
stage = path.with_suffix('.part') else:print(text)
stage.write_text(text + '\n')
stage.replace(path)
else:
print(text)
if __name__ == '__main__': if __name__ == '__main__':
-196
View File
@@ -1,196 +0,0 @@
"""Audit linked submission histories without inferring event chronology."""
import argparse
from collections import Counter
import json
from pathlib import Path
import sqlite3
from paper_atlas.db.backend import database_arguments, open_read_connection
from paper_atlas.db.submissions import timestamp
from paper_atlas.querying import LATEST_DECISION
ATTEMPTS = '''SELECT s.paper_id,s.id AS submission_id,e.venue_id,v.acronym AS venue,e.year,e.track,
count(d.id) AS decision_observations,
MAX(CASE WHEN d.status IN ('rejected','desk_rejected','withdrawn') THEN 1 ELSE 0 END)
AS historical_negative,
MAX(CASE WHEN d.status='accepted' THEN 1 ELSE 0 END) AS historical_acceptance,
COALESCE(MAX(CASE WHEN ''' + LATEST_DECISION + ''' THEN d.status END),'unknown')
AS latest_observed_status
FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id
LEFT JOIN decisions d ON d.submission_id=s.id
GROUP BY s.paper_id,s.id,e.venue_id,v.acronym,e.year,e.track
ORDER BY s.paper_id,e.venue_id,s.id'''
def _paper_counts(attempts):
negative = sum(row['historical_negative'] for row in attempts)
accepted = sum(row['latest_observed_status'] == 'accepted' for row in attempts)
overlap = sum(row['historical_negative'] and row['latest_observed_status'] == 'accepted'
for row in attempts)
venues = {}
for row in attempts:
counts = venues.setdefault(row['venue_id'], [0, 0])
counts[0] += row['historical_negative']
counts[1] += row['latest_observed_status'] == 'accepted'
return {
'papers_with_submissions': 1,
'papers_with_multiple_submissions': int(len(attempts) > 1),
'papers_with_historical_negative': int(negative > 0),
'papers_with_current_known_acceptance': int(accepted > 0),
'papers_with_negative_and_acceptance_in_distinct_attempts': int(negative * accepted > overlap),
'papers_with_negative_and_acceptance_in_distinct_venues':
int(negative * accepted > sum(n * a for n, a in venues.values())),
}
def _example(connection, attempts):
# Keep a negative/accepted pair visible even when a paper has many attempts.
accepted = [row for row in attempts if row['latest_observed_status'] == 'accepted']
first = accepted[0] if accepted else None
other_venue = next((row for row in accepted if row['venue_id'] != first['venue_id']), None)
pair = None
for negative in attempts:
if negative['historical_negative'] and first:
candidate = first if first['venue_id'] != negative['venue_id'] else other_venue
if candidate:
pair = (negative, candidate)
break
if pair is None:
for negative in attempts:
if negative['historical_negative'] and first:
candidate = first if first['submission_id'] != negative['submission_id'] else (
accepted[1] if len(accepted) > 1 else None)
if candidate:
pair = (negative, candidate)
break
selected = {}
for row in list(pair or ()) + attempts:
if len(selected) < 20:
selected.setdefault(row['submission_id'], dict(row))
for row in selected.values():
row['decisions'] = []
for decision in connection.execute('''SELECT id,status,raw_value,evidence_url,
decision_date,observed_at FROM decisions WHERE submission_id=?
ORDER BY observed_at DESC,COALESCE(decision_date,observed_at) DESC,id DESC LIMIT 50''',
(row['submission_id'],)):
entry = dict(decision)
sources = [dict(source) for source in connection.execute('''
SELECT so.name,r.external_id,ds.source_decision_id FROM decision_sources ds
JOIN source_records r ON r.id=ds.source_record_id JOIN sources so ON so.id=r.source_id
WHERE ds.decision_id=? ORDER BY so.name,r.external_id LIMIT 101''', (entry['id'],))]
entry['sources'] = sources[:100]
entry['sources_truncated'] = len(sources) > 100
row['decisions'].append(entry)
row['decisions_truncated'] = row['decision_observations'] > len(row['decisions'])
paper_id = attempts[0]['paper_id']
return {'paper_id': paper_id,
'title': connection.execute('SELECT title FROM papers WHERE id=?', (paper_id,)).fetchone()[0],
'counts': _paper_counts(attempts), 'attempt_count': len(attempts),
'attempts': list(selected.values()), 'attempts_truncated': len(attempts) > len(selected),
'chronology': 'Not inferred from observed_at, edition year, or row order.'}
def report(db=None, *, pg_service=None, pg_schema=None, examples=20):
if not 0 <= examples <= 100:
raise ValueError('Examples must be between 0 and 100')
started_at = timestamp()
connection = open_read_connection(db, pg_service=pg_service, pg_schema=pg_schema)
if not pg_service:
connection.row_factory = sqlite3.Row
try:
if pg_service:
identity = connection.execute('SELECT current_database(),current_schema()').fetchone()
database, schema = identity[0], identity[1]
else:
database, schema = str(Path(db).resolve()), None
names = ['papers_with_submissions', 'papers_with_multiple_submissions',
'papers_with_historical_negative', 'papers_with_current_known_acceptance',
'papers_with_negative_and_acceptance_in_distinct_attempts',
'papers_with_negative_and_acceptance_in_distinct_venues']
totals = Counter({key: 0 for key in names})
totals.update(submissions=0, decision_observations=0,
attempts_with_historical_negative=0,
attempts_with_historical_negative_and_acceptance=0)
latest = Counter()
sample_attempts = []
def consume(rows):
if not rows:
return
counts = _paper_counts(rows)
totals.update(counts)
if counts['papers_with_negative_and_acceptance_in_distinct_attempts'] and len(sample_attempts) < examples:
sample_attempts.append(rows)
current = []
for raw in connection.execute(ATTEMPTS):
row = dict(raw)
if current and row['paper_id'] != current[0]['paper_id']:
consume(current)
current = []
current.append(row)
totals['submissions'] += 1
totals['decision_observations'] += row['decision_observations']
totals['attempts_with_historical_negative'] += row['historical_negative']
totals['attempts_with_historical_negative_and_acceptance'] += int(
row['historical_negative'] and row['historical_acceptance'])
latest[row['latest_observed_status']] += 1
consume(current)
# These are relationship checks, not a substitute for the final entity/FK audit.
integrity = {}
checks = {
'submissions_without_source_links': '''SELECT count(*) FROM submissions s
WHERE NOT EXISTS(SELECT 1 FROM submission_sources ss WHERE ss.submission_id=s.id)''',
'decisions_without_source_links': '''SELECT count(*) FROM decisions d
WHERE NOT EXISTS(SELECT 1 FROM decision_sources ds WHERE ds.decision_id=d.id)''',
'submission_source_paper_mismatches': '''SELECT count(*) FROM submission_sources ss
JOIN submissions s ON s.id=ss.submission_id JOIN source_records r ON r.id=ss.source_record_id
WHERE s.paper_id<>r.paper_id''',
'decision_source_paper_mismatches': '''SELECT count(*) FROM decision_sources ds
JOIN decisions d ON d.id=ds.decision_id JOIN submissions s ON s.id=d.submission_id
JOIN source_records r ON r.id=ds.source_record_id WHERE s.paper_id<>r.paper_id''',
}
for name, query in checks.items():
integrity[name] = connection.execute(query).fetchone()[0]
return {'report_started_at': started_at, 'checked_at': timestamp(),
'engine': 'postgresql' if pg_service else 'sqlite', 'database': database,
'schema': schema, 'pg_service': pg_service,
'status': 'observed_history_audit_not_final_dedup', 'counts': dict(totals),
'latest_attempt_status_counts': dict(sorted(latest.items())),
'evidence_relationship_checks': integrity,
'examples': [_example(connection, rows) for rows in sample_attempts],
'example_limit': examples,
'interpretation': [
'Counts use existing canonical paper links, not independently verified real-world identity.',
'Negative includes rejected, desk_rejected and withdrawn observations; these remain distinct decisions.',
'Known acceptance follows the latest observed decision per attempt, matching query --outcome.',
'Distinct attempts/venues require separate submission/venue IDs; aliases do not create new venues.',
'Coexisting evidence does not prove rejection happened before acceptance. observed_at is collection time.',
'No known acceptance is not proof of never accepted. Source signatures and completeness are not established here.',
'Examples are bounded; counts include all attempts and observations in one read-only snapshot.',
'This does not perform entity merging, final deduplication, or label namespace/type validation.',
]}
finally:
connection.close()
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog)
database_arguments(parser)
parser.add_argument('--examples', type=int, default=20)
parser.add_argument('--out')
args = parser.parse_args(argv)
result = report(args.db, pg_service=args.pg_service, pg_schema=args.pg_schema, examples=args.examples)
text = json.dumps(result, ensure_ascii=False, indent=2)
if args.out:
path = Path(args.out)
stage = path.with_suffix('.part')
stage.write_text(text + '\n')
stage.replace(path)
else:
print(text)
if __name__ == '__main__':
main()
+1 -3
View File
@@ -39,9 +39,7 @@ def audit(db, inventory, out, *, pg_service=None, pg_schema=None):
if json.loads(path.with_suffix('.manifest.json').read_text()) != manifest: if json.loads(path.with_suffix('.manifest.json').read_text()) != manifest:
raise ValueError('Collected manifest differs from inventory') raise ValueError('Collected manifest differs from inventory')
count = 0 count = 0
# Unicode paragraph/line separators are valid inside JSON strings; for line in path.read_text().splitlines():
# split physical byte lines, not Unicode text boundaries.
for line in path.read_bytes().splitlines():
row = json.loads(line) row = json.loads(line)
if any(row[key] != manifest[key] for key in ('source', 'venue', 'year', 'track')): if any(row[key] != manifest[key] for key in ('source', 'venue', 'year', 'track')):
raise ValueError('Record edition differs from inventory') raise ValueError('Record edition differs from inventory')
-1
View File
@@ -35,7 +35,6 @@ COMMANDS = {
('audit','arxiv'): ('paper_atlas.audits.arxiv', {}, '核验 arXiv 原始编号、重复行与 ZIP 完整性'), ('audit','arxiv'): ('paper_atlas.audits.arxiv', {}, '核验 arXiv 原始编号、重复行与 ZIP 完整性'),
('audit','arxiv-tags'): ('paper_atlas.audits.arxiv_tags', {}, '逐记录核验 arXiv 类别及出处完整性'), ('audit','arxiv-tags'): ('paper_atlas.audits.arxiv_tags', {}, '逐记录核验 arXiv 类别及出处完整性'),
('audit','public-openreview'): ('paper_atlas.audits.public_openreview', {}, '核对公开负面决定与已有投稿历史'), ('audit','public-openreview'): ('paper_atlas.audits.public_openreview', {}, '核对公开负面决定与已有投稿历史'),
('audit','histories'): ('paper_atlas.audits.histories', {}, '只读核对跨会议投稿历史及决定来源关系'),
} }
+35 -4
View File
@@ -27,11 +27,25 @@ RAW_ROOT = 'https://raw.githubusercontent.com/papercopilot/openreview/' + REVISI
TREE_URL = 'https://api.github.com/repos/papercopilot/openreview/git/trees/' + REVISION + '?recursive=1' TREE_URL = 'https://api.github.com/repos/papercopilot/openreview/git/trees/' + REVISION + '?recursive=1'
NEGATIVE = {'reject': 'rejected', 'rejected': 'rejected', NEGATIVE = {'reject': 'rejected', 'rejected': 'rejected',
'desk reject': 'desk_rejected', 'desk rejected': 'desk_rejected', 'desk reject': 'desk_rejected', 'desk rejected': 'desk_rejected',
'withdrawn': 'withdrawn', 'withdrawal': 'withdrawn'} 'withdraw': 'withdrawn', 'withdrawn': 'withdrawn', 'withdrawal': 'withdrawn'}
TRACKS = {'main': 'main', 'Position': 'position', TRACKS = {'main': 'main', 'Position': 'position',
'Datasets & Benchmarks': 'datasets_benchmarks'} 'Datasets & Benchmarks': 'datasets_benchmarks'}
WORKSHOP_REJECT_LABELS = {"aim-fm workshop @ neurips'24 reject", WORKSHOP_REJECT_LABELS = {"aim-fm workshop @ neurips'24 reject",
'coginterp @ neurips 2025 reject'} 'coginterp @ neurips 2025 reject'}
# Exact curated labels, tied to the year and raw workshop track. The official
# venue directory establishes workshop identity, not an original decision signature.
ICLR_WORKSHOP_LABELS = {
'iclr 2024 workshop mefomo withdrawn submission':
(2024, 'workshop_me_fomo', 'withdrawn', 'ME-FoMo'),
'iclr 2024 workshop genai4dm withdrawn submission':
(2024, 'workshop_genai4dm', 'withdrawn', 'GenAI4DM'),
'iclr 2025 workshop agenticai reject':
(2025, 'workshop_agenticai', 'rejected', 'AgenticAI'),
'iclr 2025 workshop lmrl withdrawn submission':
(2025, 'workshop_lmrl', 'withdrawn', 'LMRL'),
'iclr 2026 workshop llm reasoning withdrawn submission':
(2026, 'workshop_llm_reasoning', 'withdrawn', 'LLM_Reasoning'),
}
def download(url, limit): def download(url, limit):
@@ -63,6 +77,20 @@ def normalize(row, family, year, provenance, include_workshops=False):
"""Return a normalized assertion or a reason requiring separate review.""" """Return a normalized assertion or a reason requiring separate review."""
raw_status = row.get('status', '') raw_status = row.get('status', '')
status = negative_status(raw_status) status = negative_status(raw_status)
workshop = ICLR_WORKSHOP_LABELS.get(' '.join(raw_status.casefold().split()))
workshop_metadata = {}
if workshop:
expected_year, expected_track, status, group_name = workshop
if family != 'iclr' or year != expected_year:
raise ValueError('Workshop status label conflicts with source conference year')
if row.get('track') != expected_track:
return None, 'conflicting_workshop_track'
if not include_workshops:
return None, 'separate_workshop'
workshop_metadata = {
'workshop_venueid': f'ICLR.cc/{year}/Workshop/{group_name}',
'workshop_identity_evidence_url': 'https://openreview.net/venue?id=ICLR.cc',
}
if status is None: if status is None:
if re.search(r'\bretract\w*\b', raw_status, re.I): if re.search(r'\bretract\w*\b', raw_status, re.I):
return None, 'retracted' return None, 'retracted'
@@ -90,7 +118,9 @@ def normalize(row, family, year, provenance, include_workshops=False):
return None, 'unmapped_venue' return None, 'unmapped_venue'
title = row.get('title') title = row.get('title')
abstract = row.get('abstract') abstract = row.get('abstract')
if not isinstance(title, str) or not title.strip(): if title is None or (isinstance(title, str) and not title.strip()):
return None, 'missing_title'
if not isinstance(title, str):
raise ValueError('Public submission lacks a title') raise ValueError('Public submission lacks a title')
if abstract is not None and not isinstance(abstract, str): if abstract is not None and not isinstance(abstract, str):
raise ValueError('Abstract must be text or null') raise ValueError('Abstract must be text or null')
@@ -116,7 +146,8 @@ def normalize(row, family, year, provenance, include_workshops=False):
'venue': venue, 'year': year, 'track': normalized_track, 'venue': venue, 'year': year, 'track': normalized_track,
'status': status, 'raw_decision': raw_status, 'evidence_url': evidence, 'status': status, 'raw_decision': raw_status, 'evidence_url': evidence,
'observed_at': AS_OF, 'tags': tags, 'observed_at': AS_OF, 'tags': tags,
'metadata': {**provenance, 'raw_track': track, 'raw_status': raw_status, 'metadata': {**provenance, **workshop_metadata,
'raw_track': track, 'raw_status': raw_status,
'evidence_kind': 'curated_public_status_assertion', 'evidence_kind': 'curated_public_status_assertion',
'original_decision_signature_verified': False, 'original_decision_signature_verified': False,
'source_snapshot_upper_bound': AS_OF}}, None 'source_snapshot_upper_bound': AS_OF}}, None
@@ -215,7 +246,7 @@ def _collect_files(out, selected, include_workshops, fetcher):
name = f'public-openreview-{family}-{year}-{track}.jsonl' name = f'public-openreview-{family}-{year}-{track}.jsonl'
path = stage / name path = stage / name
path.write_text(''.join(json.dumps(row, ensure_ascii=False) + '\n' for row in records)) path.write_text(''.join(json.dumps(row, ensure_ascii=False) + '\n' for row in records))
manifest = {'source': SOURCE, 'parser_version': 1, 'venue': records[0]['venue'], manifest = {'source': SOURCE, 'parser_version': 3, 'venue': records[0]['venue'],
'year': year, 'track': track, 'count': len(records), 'status': 'partial', 'year': year, 'track': track, 'count': len(records), 'status': 'partial',
'file': str(out / name), 'file_sha256': hashlib.sha256(path.read_bytes()).hexdigest(), 'file': str(out / name), 'file_sha256': hashlib.sha256(path.read_bytes()).hexdigest(),
'list_url': REPOSITORY + '/tree/' + REVISION, 'source_revision': REVISION, 'list_url': REPOSITORY + '/tree/' + REVISION, 'source_revision': REVISION,
-69
View File
@@ -7,34 +7,6 @@ from paper_atlas.audits.coverage import report
from paper_atlas.db.store import Store from paper_atlas.db.store import Store
def add_coverage_evidence(store):
paper, record = store.record('official_metadata', 'known', 'https://example.org/known',
'Known paper with two source observations', 'Complete canonical abstract', ['Jane Doe', 'John Smith'],
{'openreview': 'coverageForum', 'arxiv': '2401.98765'})
edition = store.decision(paper, record, 'COLING+LREC', 2024, 'main', 'known',
'https://example.org/accept', 'accepted', 'Accept', aliases=['COLING', 'LREC'],
identities=[('openreview', 'coverageForum')], observed_at='2025-05-01T00:00:00Z')
same, mirror = store.record('bibliography', 'mirror', 'https://example.org/mirror',
'Known paper with two source observations', None, ['Jane Doe', 'John Smith'], {'openreview': 'coverageForum'})
store.decision(same, mirror, 'COLING+LREC', 2024, 'main', 'mirror', 'https://example.org/older',
'rejected', 'Reject', identities=[('openreview', 'coverageForum')],
observed_at='2025-05-01T00:00:00Z', decision_date='2025-04-30T00:00:00Z')
unknown, unknown_record = store.record('unknown_catalogue', 'unknown', 'https://example.org/unknown',
'Indexed work without a public decision', None, [])
store.decision(unknown, unknown_record, 'COLING+LREC', 2024, 'main', 'unknown',
'https://example.org/unknown', None, '', identities=[('openreview', 'unknownForum')])
same, later = store.record('official_metadata', 'later', 'https://example.org/later',
'Known paper with two source observations', 'Complete canonical abstract', ['Jane Doe', 'John Smith'],
{'openreview': 'coverageNext', 'arxiv': '2401.98765'})
store.decision(same, later, 'COLING+LREC', 2025, 'findings', 'later', 'https://example.org/later',
'accepted', 'Accept', identities=[('openreview', 'coverageNext')], observed_at='2025-06-01T00:00:00Z')
source = store.source('official_metadata', 'https://example.org')
for url, status in [('https://example.org/list', 'complete'), ('https://example.org/identity-refresh', 'partial')]:
store.conn.execute('''INSERT INTO edition_sources(edition_id,source_id,list_url,status,expected_count,imported_count)
VALUES(?,?,?,?,?,?)''', (edition, source, url, status, 1, 1))
store.conn.commit()
class CoverageTests(unittest.TestCase): class CoverageTests(unittest.TestCase):
def setUp(self): def setUp(self):
self.tmp=tempfile.TemporaryDirectory();self.addCleanup(self.tmp.cleanup) self.tmp=tempfile.TemporaryDirectory();self.addCleanup(self.tmp.cleanup)
@@ -59,46 +31,5 @@ class CoverageTests(unittest.TestCase):
self.store.conn.commit();coling=report(self.db,self.registry)['venues'][0] self.store.conn.commit();coling=report(self.db,self.registry)['venues'][0]
self.assertEqual(coling['imported_submissions'],2);self.assertEqual(coling['distinct_papers'],1) self.assertEqual(coling['imported_submissions'],2);self.assertEqual(coling['distinct_papers'],1)
def test_observations_attempts_and_missing_source_abstracts_stay_separate(self):
add_coverage_evidence(self.store)
result = report(self.db, self.registry)
self.assertEqual(result['engine'], 'sqlite')
self.assertEqual(result['database'], str(self.db))
coling = result['venues'][0]
self.assertEqual((coling['imported_submissions'], coling['distinct_papers']), (3, 2))
edition, findings = coling['editions']
self.assertEqual((edition['submissions'], edition['papers'], edition['papers_without_abstract_text']), (2, 2, 1))
self.assertEqual(edition['latest_observed_status_counts']['accepted'], 1)
self.assertEqual(edition['latest_observed_status_counts']['rejected'], 0)
self.assertEqual(edition['latest_observed_status_counts']['unknown'], 1)
self.assertEqual(edition['decision_observation_counts']['accepted'], 1)
self.assertEqual(edition['decision_observation_counts']['rejected'], 1)
self.assertEqual(edition['decision_observation_counts']['unknown'], 0)
counts = {row['source']: row for row in edition['source_record_counts']}
self.assertEqual(counts['bibliography']['source_records_without_abstract_text'], 1)
self.assertEqual(counts['official_metadata']['source_records'], 1)
self.assertEqual(len(edition['sources']), 2)
self.assertEqual(findings['track'], 'findings')
self.assertEqual(result['imported_venues_outside_registry'], [])
def test_missing_sqlite_audit_does_not_create_a_database(self):
path = self.root / 'absent.sqlite'
with self.assertRaisesRegex(ValueError, 'Existing database'):
report(path, self.registry)
self.assertFalse(path.exists())
def test_empty_editions_remain_visible_after_shared_aggregation(self):
self.store.conn.execute("INSERT INTO venues(acronym,name,field,venue_type) VALUES('AAAI','AAAI','general_ai','conference')")
venue = self.store.conn.execute("SELECT id FROM venues WHERE acronym='AAAI'").fetchone()[0]
self.store.conn.execute("INSERT INTO editions(venue_id,year,track) VALUES(?,2026,'main')", (venue,))
self.store.conn.commit()
aaai = report(self.db, self.registry)['venues'][1]
self.assertEqual(aaai['history_status'], 'no_imported_records')
self.assertEqual(len(aaai['editions']), 1)
edition = aaai['editions'][0]
self.assertEqual((edition['submissions'], edition['papers'], edition['papers_without_abstract_text']), (0, 0, 0))
self.assertEqual(sum(edition['latest_observed_status_counts'].values()), 0)
self.assertEqual(edition['source_record_counts'], [])
if __name__=='__main__':unittest.main() if __name__=='__main__':unittest.main()
-114
View File
@@ -1,114 +0,0 @@
from pathlib import Path
import tempfile
import unittest
from paper_atlas.audits.histories import report
from paper_atlas.db.store import Store
def add_history_fixture(store):
def event(work, forum, venue, year, track, status, observed):
paper, record = store.record('history_fixture', work + '/' + forum,
'https://example.org/' + forum, work + ' title\x00 preserved', 'Abstract', ['Jane Doe'],
{'arxiv': work})
store.decision(paper, record, venue, year, track, forum,
'https://example.org/' + forum + '/' + str(status), status, status or '',
identities=[('openreview', forum)], observed_at=observed)
return paper
# The negative observation was collected later: observation order is not chronology.
event('2501.00001', 'HistoryA01', 'ICLR', 2024, 'main', 'rejected', '2026-02-01T00:00:00Z')
event('2501.00001', 'HistoryA02', 'ICML', 2025, 'main', 'accepted', '2026-01-01T00:00:00Z')
event('2501.00002', 'HistoryB01', 'ICLR', 2024, 'main', 'rejected', '2026-01-01T00:00:00Z')
event('2501.00002', 'HistoryB01', 'ICLR', 2024, 'main', 'accepted', '2026-02-01T00:00:00Z')
event('2501.00003', 'HistoryC01', 'ICLR', 2024, 'main', 'desk_rejected', '2026-01-01T00:00:00Z')
event('2501.00003', 'HistoryC02', 'ICLR', 2024, 'workshop_example', 'accepted', '2026-02-01T00:00:00Z')
event('2501.00004', 'HistoryD01', 'ICML', 2025, 'main', 'accepted', '2026-01-01T00:00:00Z')
event('2501.00004', 'HistoryD01', 'ICML', 2025, 'main', 'withdrawn', '2026-02-01T00:00:00Z')
event('2501.00004', 'HistoryD02', 'ICLR', 2024, 'main', 'rejected', '2026-01-01T00:00:00Z')
event('2501.00005', 'HistoryE01', 'COLM', 2026, 'main', None, '2026-01-01T00:00:00Z')
store.conn.commit()
class HistoryTests(unittest.TestCase):
def setUp(self):
self.tmp = tempfile.TemporaryDirectory()
self.addCleanup(self.tmp.cleanup)
self.db = Path(self.tmp.name) / 'sample.sqlite'
self.store = Store(self.db)
self.addCleanup(self.store.conn.close)
def test_distinct_attempts_venues_and_latest_acceptances_are_not_observation_counts(self):
add_history_fixture(self.store)
result = report(self.db)
self.assertEqual(result['counts'], {
'papers_with_submissions': 5, 'papers_with_multiple_submissions': 3,
'papers_with_historical_negative': 4, 'papers_with_current_known_acceptance': 3,
'papers_with_negative_and_acceptance_in_distinct_attempts': 2,
'papers_with_negative_and_acceptance_in_distinct_venues': 1,
'submissions': 8, 'decision_observations': 9,
'attempts_with_historical_negative': 5,
'attempts_with_historical_negative_and_acceptance': 2,
})
self.assertEqual(result['latest_attempt_status_counts'],
{'accepted': 3, 'desk_rejected': 1, 'rejected': 2, 'unknown': 1, 'withdrawn': 1})
self.assertEqual(len(result['examples']), 2)
first = result['examples'][0]
self.assertIn('\x00', first['title'])
self.assertEqual({r['venue'] for r in first['attempts']}, {'ICLR', 'ICML'})
self.assertTrue(all(r['decisions'][0]['sources'] for r in first['attempts']))
self.assertTrue(all(r['decisions'][0]['decision_date'] is None for r in first['attempts']))
self.assertIn('Not inferred', first['chronology'])
self.assertEqual(result['status'], 'observed_history_audit_not_final_dedup')
self.assertTrue(all(v == 0 for v in result['evidence_relationship_checks'].values()))
def test_missing_and_mislinked_source_evidence_is_reported_without_repair(self):
add_history_fixture(self.store)
self.store.conn.execute('DELETE FROM decision_sources WHERE decision_id=1')
self.store.conn.execute('DELETE FROM submission_sources WHERE submission_id=1')
# Record3 belongs to paper2; move it to paper1 to create a real mismatch.
self.store.conn.execute('UPDATE source_records SET paper_id=1 WHERE id=3')
self.store.conn.commit()
result = report(self.db, examples=0)
checks = result['evidence_relationship_checks']
self.assertEqual(checks['decisions_without_source_links'], 1)
self.assertEqual(checks['submissions_without_source_links'], 1)
self.assertEqual(checks['submission_source_paper_mismatches'], 1)
self.assertEqual(checks['decision_source_paper_mismatches'], 2)
self.assertEqual(self.store.conn.execute('SELECT paper_id FROM source_records WHERE id=3').fetchone()[0], 1)
def test_example_limit_does_not_change_global_counts(self):
add_history_fixture(self.store)
none, one = report(self.db, examples=0), report(self.db, examples=1)
self.assertEqual(none['counts'], one['counts'])
self.assertEqual(none['examples'], [])
self.assertEqual(len(one['examples']), 1)
def test_empty_snapshot_and_invalid_limit_do_not_create_missing_database(self):
empty = report(self.db)
self.assertTrue(all(v == 0 for v in empty['counts'].values()))
self.assertEqual(empty['latest_attempt_status_counts'], {})
absent = self.db.parent / 'absent.sqlite'
with self.assertRaisesRegex(ValueError, 'Examples'):
report(absent, examples=-1)
with self.assertRaisesRegex(ValueError, 'Existing database'):
report(absent)
self.assertFalse(absent.exists())
def test_truncated_example_keeps_the_cross_venue_acceptance_visible(self):
paper, record = self.store.record('fixture', 'many', 'https://example.org/many',
'Many attempts', 'Abstract', [])
for index in range(26):
accepted = index == 25
forum = f'BoundedForum{index}'
self.store.decision(paper, record, 'ICML' if accepted else 'ICLR', 2025, 'main', forum,
'https://example.org/' + forum, 'accepted' if accepted else 'rejected',
'Accept' if accepted else 'Reject', identities=[('openreview', forum)])
self.store.conn.commit()
result = report(self.db)
example, = result['examples']
self.assertEqual((example['attempt_count'], len(example['attempts'])), (26, 20))
self.assertTrue(example['attempts_truncated'])
self.assertEqual({row['latest_observed_status'] for row in example['attempts']},
{'accepted', 'rejected'})
self.assertEqual(result['counts']['submissions'], 26)
-16
View File
@@ -175,22 +175,6 @@ class PostgreSQLIntegrationTests(unittest.TestCase):
finally: finally:
reader.close() reader.close()
def test_history_audit_matches_sqlite_for_actual_postgresql_snapshot(self):
from paper_atlas.audits.histories import report
from tests.test_histories import add_history_fixture
store = Store(self.db)
try:
add_history_fixture(store)
finally:
store.conn.close()
expected = report(self.db)
self.assertEqual(self.migrate()['status'], 'complete')
actual = report(pg_service=self.service, pg_schema=self.target)
self.assertEqual(actual['engine'], 'postgresql')
self.assertEqual(actual['schema'], self.target)
for key in ('counts', 'latest_attempt_status_counts', 'evidence_relationship_checks', 'examples'):
self.assertEqual(actual[key], expected[key], key)
def interrupt_after_first_table(self): def interrupt_after_first_table(self):
calls = 0 calls = 0
def interrupt(*args): def interrupt(*args):
-44
View File
@@ -243,50 +243,6 @@ class PostgreSQLIngestionTests(unittest.TestCase):
finally: finally:
reader.close() reader.close()
def test_coverage_matches_sqlite_with_history_aliases_and_missing_source_abstracts(self):
from paper_atlas.audits.coverage import report
from tests.test_coverage_report import add_coverage_evidence
registry = self.root / 'venues.json'
registry.write_text(json.dumps({'scope_note': 'Candidate scope', 'venues': [
{'acronym': 'coling', 'field': 'language'}, {'acronym': 'AAAI', 'field': 'general_ai'}]}))
sample = Store(self.root / 'seed.sqlite')
try:
add_coverage_evidence(sample)
finally:
sample.conn.close()
store = self.store()
try:
add_coverage_evidence(store)
finally:
store.conn.close()
sqlite_report = report(self.root / 'seed.sqlite', registry)
observed = []
def reader(*args, **kwargs):
connection = open_read_connection(*args, **kwargs)
observed.append((connection.execute('SHOW transaction_read_only').fetchone()[0],
connection.execute('SHOW transaction_isolation').fetchone()[0]))
return connection
with patch('paper_atlas.audits.coverage.open_read_connection', side_effect=reader):
actual = report(None, registry, pg_service=self.service, pg_schema=self.schema)
self.assertEqual(observed, [('on', 'repeatable read')])
self.assertEqual(actual['engine'], 'postgresql')
self.assertEqual(actual['schema'], self.schema)
self.assertEqual(actual['pg_service'], self.service)
def content(result):
values = json.loads(json.dumps(result['venues']))
for venue in values:
for edition in venue['editions']:
for key in ('id', 'venue_id'):
edition.pop(key)
return values
self.assertEqual(content(actual), content(sqlite_report))
self.assertEqual([r['acronym'] for r in actual['imported_venues_outside_registry']], ['ICLR'])
edition = actual['venues'][0]['editions'][0]
self.assertEqual(edition['latest_observed_status_counts']['accepted'], 1)
self.assertEqual(edition['latest_observed_status_counts']['unknown'], 1)
self.assertEqual(edition['decision_observation_counts']['rejected'], 1)
self.assertEqual(edition['papers_without_abstract_text'], 1)
def test_backfill_merges_evidence_without_reimporting_or_losing_history(self): def test_backfill_merges_evidence_without_reimporting_or_losing_history(self):
files = [] files = []
for source, external, title in [('official', 'legacy', 'First bibliographic name'), ('openreview_snapshot', 'forum', 'Renamed submission')]: for source, external, title in [('official', 'legacy', 'First bibliographic name'), ('openreview_snapshot', 'forum', 'Renamed submission')]:
+118 -30
View File
@@ -45,10 +45,12 @@ class PublicOpenReviewTests(unittest.TestCase):
def test_only_explicit_decisions_and_verified_scope_become_events(self): def test_only_explicit_decisions_and_verified_scope_become_events(self):
for value in ('Pending', 'Active', 'Submitted to NeurIPS 2025', 'TBD', '', for value in ('Pending', 'Active', 'Submitted to NeurIPS 2025', 'TBD', '',
'Low score', 'ICML 2025 Retracted by Authors', 'Do not reject'): 'Low score', 'ICML 2025 Retracted by Authors', 'Do not reject',
'Workshop', 'Poster Workshop', 'Oral Workshop'):
self.assertIsNone(negative_status(value), value) self.assertIsNone(negative_status(value), value)
self.assertEqual(negative_status('Reject'), 'rejected') self.assertEqual(negative_status('Reject'), 'rejected')
self.assertEqual(negative_status('Desk rejected'), 'desk_rejected') self.assertEqual(negative_status('Desk rejected'), 'desk_rejected')
self.assertEqual(negative_status('Withdraw'), 'withdrawn')
self.assertEqual(negative_status('NeurIPS 2023 Conference Withdrawn Submission'), 'withdrawn') self.assertEqual(negative_status('NeurIPS 2023 Conference Withdrawn Submission'), 'withdrawn')
for raw, expected in [('main', 'main'), ('Position', 'position'), for raw, expected in [('main', 'main'), ('Position', 'position'),
('Datasets & Benchmarks', 'datasets_benchmarks')]: ('Datasets & Benchmarks', 'datasets_benchmarks')]:
@@ -98,6 +100,121 @@ class PublicOpenReviewTests(unittest.TestCase):
self.assertEqual(list(Path(tmp).glob('*.jsonl')), []) self.assertEqual(list(Path(tmp).glob('*.jsonl')), [])
self.assertFalse((Path(tmp) / 'public-openreview-inventory.json').exists()) self.assertFalse((Path(tmp) / 'public-openreview-inventory.json').exists())
def test_missing_title_is_held_without_losing_valid_negative_records(self):
with tempfile.TemporaryDirectory() as tmp:
result = self.collect(tmp, {'venues/iclr/iclr2017.jsonl': [
self.row(id='SJUdkecgx', title=''),
self.row(id='NoTitle001', title=None),
self.row(id='Whitespace', title=' '),
self.row(id='ValidReject'),
self.row(id='Withdraw01', status='Withdraw'),
self.row(id='Workshop01', status='Workshop'),
]}, families=['iclr'], years=[2017])
self.assertEqual(result['input_rows'], 6)
self.assertEqual(result['normalized_records'], 2)
self.assertEqual(result['source_files'][0]['excluded_or_held'],
{'missing_title': 3, 'not_explicit_negative': 1})
held_path = Path(result['held_file'])
self.assertEqual(hashlib.sha256(held_path.read_bytes()).hexdigest(),
result['held_file_sha256'])
held = [json.loads(line) for line in held_path.read_text().splitlines()]
self.assertEqual([row['id'] for row in held], ['SJUdkecgx', 'NoTitle001', 'Whitespace'])
self.assertTrue(all(row['reason'] == 'missing_title' and row['status'] == 'Reject'
for row in held))
self.assertEqual([row['provenance']['source_line'] for row in held], [1, 2, 3])
self.assertNotIn('private@example.org', held_path.read_text())
self.assertNotIn('private review', held_path.read_text())
manifest = result['files'][0]
self.assertEqual((manifest['parser_version'], manifest['status']), (3, 'partial'))
rows = [json.loads(line) for line in Path(manifest['file']).read_text().splitlines()]
self.assertEqual([(row['identifiers']['openreview'], row['status']) for row in rows],
[('ValidReject', 'rejected'), ('Withdraw01', 'withdrawn')])
for row in held:
self.assertEqual(row['provenance']['source_revision'], REVISION)
def test_nontext_title_still_fails_collection(self):
with tempfile.TemporaryDirectory() as tmp:
with self.assertRaisesRegex(ValueError, 'lacks a title'):
self.collect(tmp, {'venues/iclr/iclr2017.jsonl': [self.row(title=['invalid'])]},
families=['iclr'], years=[2017])
self.assertFalse((Path(tmp) / 'public-openreview-inventory.json').exists())
self.assertEqual(list(Path(tmp).glob('*.jsonl')), [])
def workshop_cases(self):
return [
(2024, 'workshop_me_fomo', 'ICLR 2024 Workshop MEFoMo Withdrawn Submission', 'withdrawn', 'ME-FoMo'),
(2024, 'workshop_genai4dm', 'ICLR 2024 Workshop GenAI4DM Withdrawn Submission', 'withdrawn', 'GenAI4DM'),
(2025, 'workshop_agenticai', 'ICLR 2025 Workshop AgenticAI Reject', 'rejected', 'AgenticAI'),
(2025, 'workshop_lmrl', 'ICLR 2025 Workshop LMRL Withdrawn Submission', 'withdrawn', 'LMRL'),
(2026, 'workshop_llm_reasoning', 'ICLR 2026 Workshop LLM Reasoning Withdrawn Submission', 'withdrawn', 'LLM_Reasoning'),
]
def test_iclr_workshop_labels_require_opt_in_and_retain_identity_evidence(self):
for year, track, label, status, group in self.workshop_cases():
with self.subTest(label=label):
raw = self.row(track=track, status=label)
self.assertEqual(normalize(raw, 'iclr', year, self.provenance()),
(None, 'separate_workshop'))
row, reason = normalize(raw, 'iclr', year, self.provenance(), True)
self.assertIsNone(reason)
self.assertEqual((row['venue'], row['year'], row['track'], row['status']),
('ICLR', year, track, status))
self.assertEqual(row['raw_decision'], label)
self.assertEqual(row['metadata']['workshop_venueid'],
f'ICLR.cc/{year}/Workshop/{group}')
self.assertFalse(row['metadata']['original_decision_signature_verified'])
self.assertEqual(row['evidence_url'], 'https://example.org/pinned.jsonl#L7')
self.assertNotIn('private review', json.dumps(row))
def test_workshop_label_scope_conflicts_never_become_main_events(self):
for year, track, label, _, _ in self.workshop_cases():
for enabled in (False, True):
for wrong_track in ('main', 'workshop_other'):
self.assertEqual(normalize(self.row(track=wrong_track, status=label),
'iclr', year, self.provenance(), enabled),
(None, 'conflicting_workshop_track'))
for family, wrong_year in [('icml', year), ('iclr', year + 1)]:
with self.assertRaisesRegex(ValueError, 'conference year'):
normalize(self.row(track=track, status=label), family,
wrong_year, self.provenance(), enabled)
row, reason = normalize(self.row(track='workshop_unknown',
status='ICLR 2026 Workshop Unknown Reject'),
'iclr', 2026, self.provenance(), True)
self.assertIsNone(row)
self.assertEqual(reason, 'unmapped_negative_label')
def test_workshop_collection_and_import_keep_five_tracks_separate_from_main(self):
files = {}
for index, (year, track, label, _, _) in enumerate(self.workshop_cases()):
files.setdefault(f'venues/iclr/iclr{year}.jsonl', []).append(
self.row(id=f'Workshop{index:02}', track=track, status=label))
files['venues/iclr/iclr2024.jsonl'].append(self.row())
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
default = self.collect(root / 'default', files, families=['iclr'])
self.assertEqual(default['normalized_records'], 1)
held = [json.loads(line) for line in Path(default['held_file']).read_bytes().split(b'\n') if line]
self.assertEqual(len(held), 5)
self.assertTrue(all(row['reason'] == 'separate_workshop' for row in held))
selected = self.collect(root / 'selected', files, families=['iclr'], include_workshops=True)
self.assertEqual(selected['normalized_records'], 6)
self.assertEqual(len(selected['files']), 6)
self.assertEqual(Path(selected['held_file']).read_bytes(), b'')
db = root / 'db.sqlite'
for manifest in selected['files']:
self.assertEqual(manifest['parser_version'], 3)
ingest_file(db, manifest['file'])
store = Store(db)
try:
scopes = set(store.conn.execute('SELECT e.year,e.track,d.status FROM submissions s '
'JOIN editions e ON e.id=s.edition_id '
'JOIN decisions d ON d.submission_id=s.id'))
expected = {(year, track, status) for year, track, _, status, _ in self.workshop_cases()}
self.assertEqual(scopes, expected | {(2024, 'main', 'rejected')})
self.assertEqual(store.conn.execute('PRAGMA foreign_key_check').fetchall(), [])
finally:
store.conn.close()
def test_mirror_reimport_preserves_one_attempt_and_later_acceptance_elsewhere(self): def test_mirror_reimport_preserves_one_attempt_and_later_acceptance_elsewhere(self):
with tempfile.TemporaryDirectory() as tmp: with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp) root = Path(tmp)
@@ -152,35 +269,6 @@ class PublicOpenReviewTests(unittest.TestCase):
finally: finally:
store.conn.close() store.conn.close()
def test_unicode_separators_in_abstract_survive_audit_and_import(self):
for separator in ('\u0085', '\u2028', '\u2029'):
with self.subTest(separator=repr(separator)), tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
abstract = 'First paragraph' + separator + 'Second paragraph'
result = self.collect(root / 'source', {
'venues/icml/icml2025.jsonl': [self.row(abstract=abstract)]})
path = Path(result['files'][0]['file'])
data = path.read_bytes()
self.assertIn(separator.encode(), data)
self.assertEqual(data.count(b'\n'), 1)
db = root / 'db.sqlite'
store = Store(db)
store.conn.close()
inventory = root / 'source/public-openreview-inventory.json'
before = audit(db, inventory, root / 'before.json')
self.assertEqual(before['status'], 'ready_for_serial_import')
self.assertEqual(before['records_checked'], 1)
ingest_file(db, path)
after = audit(db, inventory, root / 'after.json')
self.assertEqual(after['status'], 'ready_for_serial_import')
self.assertEqual(after['existing_same_edition_attempts'], 1)
store = Store(db)
try:
self.assertEqual(store.conn.execute(
'SELECT abstract FROM source_records').fetchone()[0], abstract)
finally:
store.conn.close()
if __name__ == '__main__': if __name__ == '__main__':
unittest.main() unittest.main()