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Author SHA1 Message Date
codex-bot 8e82742900 Recognize explicit ICLR workshop decisions with scope guards
Metadata integrity checks / metadata (push) Successful in 2m40s
2026-11-08 04:18:09 +08:00
codex-bot f327861a00 Hold untitled public assertions and retain explicit withdrawals
Metadata integrity checks / metadata (push) Successful in 1m17s
2026-11-08 03:23:25 +08:00
16 changed files with 173 additions and 924 deletions
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@@ -53,11 +53,8 @@ jobs:
subprocess.run([python,'-I','-B','-m','paper_atlas','import','arxiv','--help'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-m','paper_atlas','import','arxiv','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','backfill','--help'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-m','paper_atlas','maintain','backfill','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','public-openreview','--help'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-m','paper_atlas','audit','public-openreview','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','histories','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','curate','identifiers','--help'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-c','from paper_atlas.postgres.writer import PostgresStore, WriteConnection'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-c','from paper_atlas.postgres.writer import PostgresStore, WriteConnection'],cwd=outside,check=True)
smoke = "from paper_atlas.db.store import Store; from paper_atlas.config import DEFAULT_REGISTRY; import json; assert {'COLM','MM','MLSys'} <= {v['acronym'] for v in json.loads(DEFAULT_REGISTRY.read_text())['venues']}; s=Store('installed.sqlite'); s.conn.close()" smoke = "from paper_atlas.db.store import Store; from paper_atlas.config import DEFAULT_REGISTRY; import json; assert {'COLM','MM','MLSys'} <= {v['acronym'] for v in json.loads(DEFAULT_REGISTRY.read_text())['venues']}; s=Store('installed.sqlite'); s.conn.close()"
subprocess.run([python,'-I','-B','-c',smoke],cwd=outside,check=True) subprocess.run([python,'-I','-B','-c',smoke],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','query','--db','installed.sqlite','--stats'],cwd=outside,check=True) subprocess.run([python,'-I','-B','-m','paper_atlas','query','--db','installed.sqlite','--stats'],cwd=outside,check=True)
subprocess.run([python,'-I','-B','-m','paper_atlas','audit','histories','--db','installed.sqlite','--examples','0'],cwd=outside,check=True)
PY PY
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@@ -93,6 +93,12 @@ paper-atlas audit public-openreview --db /data/paper-index/papers.sqlite \
输出按会议、届次及 main、position、datasets_benchmarks 分文件。workshop 默认进入单独的 held 清单;有明确 workshop 名称时可通过 `--include-workshops` 单列采集,不合并到主会。Retraction、未映射的轨道或负面标签也保留在 `held-records.jsonl`,不强改为 Reject 或 Withdrawn。当前决定表没有独立 retracted 状态,因此撤回发表记录仍需后续专门建模。 输出按会议、届次及 main、position、datasets_benchmarks 分文件。workshop 默认进入单独的 held 清单;有明确 workshop 名称时可通过 `--include-workshops` 单列采集,不合并到主会。Retraction、未映射的轨道或负面标签也保留在 `held-records.jsonl`,不强改为 Reject 或 Withdrawn。当前决定表没有独立 retracted 状态,因此撤回发表记录仍需后续专门建模。
`parser_version=2` 还会将明确负面标签但标题缺失、空白或 null 的记录放入 `held-records.jsonl`,保留原始状态、forum ID、固定来源版本和行号;不制造标题或导入不可识别的论文,也不让这一条缺失阻断其他可用记录。held 文件哈希与各原因数量保存在 inventory;非文本标题、错误身份、冲突届次和哈希不符仍使整批失败。旧年 ICLR 镜像的明确 `Withdraw` 标签归为 `withdrawn`,`Workshop`、`Poster Workshop`、`Oral Workshop` 均不作为拒稿。采集文件与导入主库仍是两个独立步骤。
`parser_version=3` 增加五组已核实身份的 ICLR workshop 标签:2024 ME-FoMo / GenAI4DM 的 Withdrawn Submission、2025 AgenticAI 的 Reject / LMRL 的 Withdrawn Submission,以及 2026 LLM Reasoning 的 Withdrawn Submission。仅在 `--include-workshops` 下输出,并分别保存 `workshop_me_fomo`、`workshop_genai4dm`、`workshop_agenticai`、`workshop_lmrl`、`workshop_llm_reasoning`;默认仍暂存。标签必须与原文件会议、年份和原始 workshop track 一致,错年/错会议使采集失败,错轨道单独暂存,未知标签继续待核查,不用宽泛的 Reject/Withdraw 正则猜测。
[OpenReview 官方 ICLR 活动目录](https://openreview.net/venue?id=ICLR.cc) 确认上述独立 workshop 身份;[ME-FoMo 2024](https://sites.google.com/view/me-fomo2024/call-for-papers)、[GenAI4DM 2024](https://sites.google.com/view/genai4dm-iclr2024)、[AgenticAI 2025](https://iclragenticai.github.io/) 和 [LLM Reasoning 2026](https://sites.google.com/view/iclr-2026-llmreasoning) 的活动网站也提供对应投稿入口。输出在 metadata 保存 `workshop_venueid` 和身份目录证据,决定仍只标为固定镜像的公开分类断言,保留原始标签、forum、来源行号与哈希,不声称核验原始决定签名。2026-11-08 核查时部分原站记录页要求浏览器验证;身份目录和主办方入口可读,不代表逐篇原始决定已可访问,也不外推其他 workshop 的公开政策。采集后仍须经过 PostgreSQL 身份/决定冲突预检、串行导入和独立验收。
该来源明确标记为 `curated_public_status_assertion`:保留源 commit、文件哈希、行号、原标签和 forum ID,不声称已核验原始 PC 签名。只保存标题、摘要、公开作者名、关键词、领域、索引与决定来源,不缓存镜像中的个人资料、邮箱、性别、评审内容或 PDF。所有输出清单均为 partial;盘点中的零条记录仅描述这个固定镜像。 该来源明确标记为 `curated_public_status_assertion`:保留源 commit、文件哈希、行号、原标签和 forum ID,不声称已核验原始 PC 签名。只保存标题、摘要、公开作者名、关键词、领域、索引与决定来源,不缓存镜像中的个人资料、邮箱、性别、评审内容或 PDF。所有输出清单均为 partial;盘点中的零条记录仅描述这个固定镜像。
入库前审计核验文件哈希、数量、轨道和来源声明,并用真实 forum ID 对比同届同轨道已有投稿。存在不同决定时阻止整批导入,交由来源和时序核查;另一会议的后续录用属于独立投稿历史,不构成该次拒稿的冲突。同一 forum 的镜像不新增投稿事件,但论文实体的跨平台去重仍须在全量结束后核验。审计通过的报告包含带 SHA-256 的导入队列;应在单写入维护锁下及时串行导入,主库变化后重新审计。 入库前审计核验文件哈希、数量、轨道和来源声明,并用真实 forum ID 对比同届同轨道已有投稿。存在不同决定时阻止整批导入,交由来源和时序核查;另一会议的后续录用属于独立投稿历史,不构成该次拒稿的冲突。同一 forum 的镜像不新增投稿事件,但论文实体的跨平台去重仍须在全量结束后核验。审计通过的报告包含带 SHA-256 的导入队列;应在单写入维护锁下及时串行导入,主库变化后重新审计。
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@@ -2,55 +2,6 @@
先在已确认的远程环境安装项目,使用 `paper-atlas`。从源码运行时,将命令前缀替换为 `python3 -B -m paper_atlas`,其余参数相同。数据目录位于仓库外。 先在已确认的远程环境安装项目,使用 `paper-atlas`。从源码运行时,将命令前缀替换为 `python3 -B -m paper_atlas`,其余参数相同。数据目录位于仓库外。
## 按证据补充稳定标识
`paper-atlas curate identifiers --plan /data/review/plan.json --output /data/review/prepared`
只生成新的 JSONL、manifest、证据副本及 `curation-report.json`,不会连接数据库。
输出目录必须不存在,父目录必须已存在;任何输入或断言失败,都不发布本批输出。
原始文件不变,未选中的记录逐字节保留。题名、作者、年份、页码、投稿决定、标签和既有 metadata
均不重写,仅补充 `identifiers` 并追加 `metadata.identifier_curation` 证据链。
计划格式如下(哈希占位符须替换为真实 SHA256,所有路径按命令当前目录解析):
```json
{
"format_version": 1,
"inputs": [{
"file": "/data/review/uai2001.jsonl",
"sha256": "<JSONL 文件 SHA256>",
"manifest_sha256": "<同名 .manifest.json 文件 SHA256>"
}],
"assertions": [{
"source": "dblp",
"external_id": "conf/uai/example",
"record_sha256": "<原始物理行字节 SHA256,包含该行原有换行符>",
"identifiers": {"arxiv": "1408.1485"},
"evidence": [{
"file": "/data/review/primary-metadata.json",
"sha256": "<证据 JSON 文件 SHA256>",
"url": "https://example.org/primary-record",
"checked_at": "2026-11-08T08:00:00Z",
"note": "说明人工核对的题名、作者、出版版本和稳定标识证据"
}]
}]
}
```
输入 manifest 必须包含 `source/venue/year/track/count/list_url/file_sha256`,且与逐条记录一致。
断言必须唯一、准确命中一条记录。仅支持无版本后缀的 arXiv 编号与小写规范 DOI;
已有同类标识不允许覆盖,相同值可以补记证据。证据只接受不超过 16 MiB 的 JSON 元数据文件,
来源 URL 要求 HTTPS 且不含凭据,核查时间必须带时区;不下载论文 PDF。
`verification_scope=input_and_evidence_integrity_only` 和 `semantic_identity_verified=false`
明确表示哈希校验不能证明两条记录属于同一作品。请先独立核对版本关系;仅年份、页码或相同题名
不能作为合并依据。存在来源冲突的行应继续暂缓。新 manifest 保留原来的 partial 状态及摘要缺失数,
不会把补充编号伪装成来源覆盖或摘要补全。证据副本按 SHA256 保存在输出目录 `evidence/`,
原计划也保存在 `plan.json`,供之后复查。
文件生成后仍需另做当前 PostgreSQL 身份、投稿和决定冲突预检;导入运行时必须包含
“稳定标识优先、多个标题候选则整文件回滚”的身份保护,再以 `import records` 独立导入并验收。
该命令不会自动导入或合并实体,也不代表最终全库去重通过。
## PostgreSQL 查询 ## PostgreSQL 查询
在远程环境安装 `.[postgres]`,通过权限为 `0600` 的 libpq service 文件连接,不把密码放入 URL、命令行或仓库。 在远程环境安装 `.[postgres]`,通过权限为 `0600` 的 libpq service 文件连接,不把密码放入 URL、命令行或仓库。
@@ -128,10 +79,10 @@ paper-atlas maintain merge --db /data/paper-index/samples/example.sqlite \
## 4. 查询与分析前检查 ## 4. 查询与分析前检查
```sh ```sh
paper-atlas query --pg-service foundry-research --query '"language model"' --limit 20 paper-atlas query --db /data/paper-index/papers.sqlite --query '"language model"' --limit 20
paper-atlas query --pg-service foundry-research --tag arxiv:category=cs.AI paper-atlas query --db /data/paper-index/papers.sqlite --tag arxiv:category=cs.AI
paper-atlas query --pg-service foundry-research --venue ICLR --year 2025 --status rejected paper-atlas query --db /data/paper-index/papers.sqlite --venue ICLR --year 2025 --status rejected
paper-atlas query --pg-service foundry-research --paper 123 paper-atlas query --db /data/paper-index/papers.sqlite --paper 123
paper-atlas coverage --db /data/paper-index/papers.sqlite --out /data/paper-index/collected/coverage.json paper-atlas coverage --db /data/paper-index/papers.sqlite --out /data/paper-index/collected/coverage.json
``` ```
@@ -140,28 +91,10 @@ paper-atlas coverage --db /data/paper-index/papers.sqlite --out /data/paper-inde
例如,查找在 ICLR 有拒稿记录、但在其他已知投稿中已有录用的论文: 例如,查找在 ICLR 有拒稿记录、但在其他已知投稿中已有录用的论文:
```sh ```sh
paper-atlas query --pg-service foundry-research \ paper-atlas query --db /data/paper-index/papers.sqlite \\
--venue ICLR --status rejected --outcome accepted --venue ICLR --status rejected --outcome accepted
``` ```
`known_acceptances` 列出目前仍为录用状态的各次投稿及会议、年份、track 和决定证据,`publication_outcome` 汇总为 accepted 或 no_known_acceptance。汇总会检查所有会议和 track,不把某次拒稿覆盖到整篇论文;同一次投稿的后续撤稿也会更新该次状态并保留原决定。no_known_acceptance 只表示现有来源中没有查到录用,不能称为“从未录用”。 `known_acceptances` 列出目前仍为录用状态的各次投稿及会议、年份、track 和决定证据,`publication_outcome` 汇总为 accepted 或 no_known_acceptance。汇总会检查所有会议和 track,不把某次拒稿覆盖到整篇论文;同一次投稿的后续撤稿也会更新该次状态并保留原决定。no_known_acceptance 只表示现有来源中没有查到录用,不能称为“从未录用”。
`--stats` 中 papers 是当前规则下的论文实体数;source_records 是来源记录数;decisions 是决定观察数。一个投稿可能有多个来源和多条观察,不能相加当作论文数。 `--stats` 中 papers 是当前规则下的论文实体数;source_records 是来源记录数;decisions 是决定观察数。一个投稿可能有多个来源和多条观察,不能相加当作论文数。
已有稳定标识或原来源记录匹配时,该身份优先;同标题、同作者的另一 arXiv 存档或扩展稿不会仅因相似标题被并入。没有身份锚点时,作者佐证的精确标题只有一个候选才可匹配;多个候选会报 `Ambiguous paper identity`,整个采集文件回滚并记录失败运行。应补有证据的标识或先核查版本关系,不删除重复候选或任取第一个。一个新来源明确同时携带两个既有稳定标识时,仍可按既有规则归并并保留投稿、标签和合并日志;未归并的同标题关系继续保留为待核查候选。这些规则不证明全库去重完成。
## 5. 投稿历史关系审计
```sh
PGSERVICEFILE=/etc/paper-atlas/pg_service.conf paper-atlas audit histories \
--pg-service foundry-research --pg-schema research --examples 20 \
--out /data/paper-index/collected/history-audit.json
```
使用一个只读一致性快照,区分论文实体、投稿和决定观察;分别统计同次投稿曾出现负面与录用观察、不同投稿共存负面与当前已知录用、不同会议之间的共存。workshop/main 是不同 track,属于同一会议时不算跨会议;会议别名也不会增加一个会议。当前已知录用使用与 `query --outcome` 相同的“每次投稿最新观察”规则,后续撤稿的该次投稿不再算当前录用,但旧录用决定仍保留。
报告不凭观察时间、届次年份或行顺序断言“拒稿发生在录用之前”。样例保留真实 `decision_date`、`observed_at`、原始标签、证据 URL 和决定来源,供进一步核查;日期缺失仍保持未知。`negative` 统计包含 rejected、desk_rejected 和 withdrawn,其原始状态不互相替换。
总数覆盖快照内全部投稿,样例由 `--examples` 限定为 0–100 篇;每篇最多展示 20 次投稿、每次最多 50 条决定、每条决定最多 100 个来源,并明确标记截断。样例优先保留负面/录用的不同投稿对。四项来源关系检查报告缺失关联和来源论文归属不一致,不自动修复。
这些统计依赖现有论文身份关联,不证明实体合并正确,也不证明原始决定签名、公开拒稿全集、标签类型或最终全库去重已完成。SQLite 独立样本可使用 `--db`;冻结备份不能代表当前 PostgreSQL 的历史情况。
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"""Audit linked submission histories without inferring event chronology."""
import argparse
from collections import Counter
import json
from pathlib import Path
import sqlite3
from paper_atlas.db.backend import database_arguments, open_read_connection
from paper_atlas.db.submissions import timestamp
from paper_atlas.querying import LATEST_DECISION
ATTEMPTS = '''SELECT s.paper_id,s.id AS submission_id,e.venue_id,v.acronym AS venue,e.year,e.track,
count(d.id) AS decision_observations,
MAX(CASE WHEN d.status IN ('rejected','desk_rejected','withdrawn') THEN 1 ELSE 0 END)
AS historical_negative,
MAX(CASE WHEN d.status='accepted' THEN 1 ELSE 0 END) AS historical_acceptance,
COALESCE(MAX(CASE WHEN ''' + LATEST_DECISION + ''' THEN d.status END),'unknown')
AS latest_observed_status
FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id
LEFT JOIN decisions d ON d.submission_id=s.id
GROUP BY s.paper_id,s.id,e.venue_id,v.acronym,e.year,e.track
ORDER BY s.paper_id,e.venue_id,s.id'''
def _paper_counts(attempts):
negative = sum(row['historical_negative'] for row in attempts)
accepted = sum(row['latest_observed_status'] == 'accepted' for row in attempts)
overlap = sum(row['historical_negative'] and row['latest_observed_status'] == 'accepted'
for row in attempts)
venues = {}
for row in attempts:
counts = venues.setdefault(row['venue_id'], [0, 0])
counts[0] += row['historical_negative']
counts[1] += row['latest_observed_status'] == 'accepted'
return {
'papers_with_submissions': 1,
'papers_with_multiple_submissions': int(len(attempts) > 1),
'papers_with_historical_negative': int(negative > 0),
'papers_with_current_known_acceptance': int(accepted > 0),
'papers_with_negative_and_acceptance_in_distinct_attempts': int(negative * accepted > overlap),
'papers_with_negative_and_acceptance_in_distinct_venues':
int(negative * accepted > sum(n * a for n, a in venues.values())),
}
def _example(connection, attempts):
# Keep a negative/accepted pair visible even when a paper has many attempts.
accepted = [row for row in attempts if row['latest_observed_status'] == 'accepted']
first = accepted[0] if accepted else None
other_venue = next((row for row in accepted if row['venue_id'] != first['venue_id']), None)
pair = None
for negative in attempts:
if negative['historical_negative'] and first:
candidate = first if first['venue_id'] != negative['venue_id'] else other_venue
if candidate:
pair = (negative, candidate)
break
if pair is None:
for negative in attempts:
if negative['historical_negative'] and first:
candidate = first if first['submission_id'] != negative['submission_id'] else (
accepted[1] if len(accepted) > 1 else None)
if candidate:
pair = (negative, candidate)
break
selected = {}
for row in list(pair or ()) + attempts:
if len(selected) < 20:
selected.setdefault(row['submission_id'], dict(row))
for row in selected.values():
row['decisions'] = []
for decision in connection.execute('''SELECT id,status,raw_value,evidence_url,
decision_date,observed_at FROM decisions WHERE submission_id=?
ORDER BY observed_at DESC,COALESCE(decision_date,observed_at) DESC,id DESC LIMIT 50''',
(row['submission_id'],)):
entry = dict(decision)
sources = [dict(source) for source in connection.execute('''
SELECT so.name,r.external_id,ds.source_decision_id FROM decision_sources ds
JOIN source_records r ON r.id=ds.source_record_id JOIN sources so ON so.id=r.source_id
WHERE ds.decision_id=? ORDER BY so.name,r.external_id LIMIT 101''', (entry['id'],))]
entry['sources'] = sources[:100]
entry['sources_truncated'] = len(sources) > 100
row['decisions'].append(entry)
row['decisions_truncated'] = row['decision_observations'] > len(row['decisions'])
paper_id = attempts[0]['paper_id']
return {'paper_id': paper_id,
'title': connection.execute('SELECT title FROM papers WHERE id=?', (paper_id,)).fetchone()[0],
'counts': _paper_counts(attempts), 'attempt_count': len(attempts),
'attempts': list(selected.values()), 'attempts_truncated': len(attempts) > len(selected),
'chronology': 'Not inferred from observed_at, edition year, or row order.'}
def report(db=None, *, pg_service=None, pg_schema=None, examples=20):
if not 0 <= examples <= 100:
raise ValueError('Examples must be between 0 and 100')
started_at = timestamp()
connection = open_read_connection(db, pg_service=pg_service, pg_schema=pg_schema)
if not pg_service:
connection.row_factory = sqlite3.Row
try:
if pg_service:
identity = connection.execute('SELECT current_database(),current_schema()').fetchone()
database, schema = identity[0], identity[1]
else:
database, schema = str(Path(db).resolve()), None
names = ['papers_with_submissions', 'papers_with_multiple_submissions',
'papers_with_historical_negative', 'papers_with_current_known_acceptance',
'papers_with_negative_and_acceptance_in_distinct_attempts',
'papers_with_negative_and_acceptance_in_distinct_venues']
totals = Counter({key: 0 for key in names})
totals.update(submissions=0, decision_observations=0,
attempts_with_historical_negative=0,
attempts_with_historical_negative_and_acceptance=0)
latest = Counter()
sample_attempts = []
def consume(rows):
if not rows:
return
counts = _paper_counts(rows)
totals.update(counts)
if counts['papers_with_negative_and_acceptance_in_distinct_attempts'] and len(sample_attempts) < examples:
sample_attempts.append(rows)
current = []
for raw in connection.execute(ATTEMPTS):
row = dict(raw)
if current and row['paper_id'] != current[0]['paper_id']:
consume(current)
current = []
current.append(row)
totals['submissions'] += 1
totals['decision_observations'] += row['decision_observations']
totals['attempts_with_historical_negative'] += row['historical_negative']
totals['attempts_with_historical_negative_and_acceptance'] += int(
row['historical_negative'] and row['historical_acceptance'])
latest[row['latest_observed_status']] += 1
consume(current)
# These are relationship checks, not a substitute for the final entity/FK audit.
integrity = {}
checks = {
'submissions_without_source_links': '''SELECT count(*) FROM submissions s
WHERE NOT EXISTS(SELECT 1 FROM submission_sources ss WHERE ss.submission_id=s.id)''',
'decisions_without_source_links': '''SELECT count(*) FROM decisions d
WHERE NOT EXISTS(SELECT 1 FROM decision_sources ds WHERE ds.decision_id=d.id)''',
'submission_source_paper_mismatches': '''SELECT count(*) FROM submission_sources ss
JOIN submissions s ON s.id=ss.submission_id JOIN source_records r ON r.id=ss.source_record_id
WHERE s.paper_id<>r.paper_id''',
'decision_source_paper_mismatches': '''SELECT count(*) FROM decision_sources ds
JOIN decisions d ON d.id=ds.decision_id JOIN submissions s ON s.id=d.submission_id
JOIN source_records r ON r.id=ds.source_record_id WHERE s.paper_id<>r.paper_id''',
}
for name, query in checks.items():
integrity[name] = connection.execute(query).fetchone()[0]
return {'report_started_at': started_at, 'checked_at': timestamp(),
'engine': 'postgresql' if pg_service else 'sqlite', 'database': database,
'schema': schema, 'pg_service': pg_service,
'status': 'observed_history_audit_not_final_dedup', 'counts': dict(totals),
'latest_attempt_status_counts': dict(sorted(latest.items())),
'evidence_relationship_checks': integrity,
'examples': [_example(connection, rows) for rows in sample_attempts],
'example_limit': examples,
'interpretation': [
'Counts use existing canonical paper links, not independently verified real-world identity.',
'Negative includes rejected, desk_rejected and withdrawn observations; these remain distinct decisions.',
'Known acceptance follows the latest observed decision per attempt, matching query --outcome.',
'Distinct attempts/venues require separate submission/venue IDs; aliases do not create new venues.',
'Coexisting evidence does not prove rejection happened before acceptance. observed_at is collection time.',
'No known acceptance is not proof of never accepted. Source signatures and completeness are not established here.',
'Examples are bounded; counts include all attempts and observations in one read-only snapshot.',
'This does not perform entity merging, final deduplication, or label namespace/type validation.',
]}
finally:
connection.close()
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog)
database_arguments(parser)
parser.add_argument('--examples', type=int, default=20)
parser.add_argument('--out')
args = parser.parse_args(argv)
result = report(args.db, pg_service=args.pg_service, pg_schema=args.pg_schema, examples=args.examples)
text = json.dumps(result, ensure_ascii=False, indent=2)
if args.out:
path = Path(args.out)
stage = path.with_suffix('.part')
stage.write_text(text + '\n')
stage.replace(path)
else:
print(text)
if __name__ == '__main__':
main()
+1 -3
View File
@@ -39,9 +39,7 @@ def audit(db, inventory, out, *, pg_service=None, pg_schema=None):
if json.loads(path.with_suffix('.manifest.json').read_text()) != manifest: if json.loads(path.with_suffix('.manifest.json').read_text()) != manifest:
raise ValueError('Collected manifest differs from inventory') raise ValueError('Collected manifest differs from inventory')
count = 0 count = 0
# Unicode paragraph/line separators are valid inside JSON strings; for line in path.read_text().splitlines():
# split physical byte lines, not Unicode text boundaries.
for line in path.read_bytes().splitlines():
row = json.loads(line) row = json.loads(line)
if any(row[key] != manifest[key] for key in ('source', 'venue', 'year', 'track')): if any(row[key] != manifest[key] for key in ('source', 'venue', 'year', 'track')):
raise ValueError('Record edition differs from inventory') raise ValueError('Record edition differs from inventory')
+1 -3
View File
@@ -6,7 +6,6 @@ from paper_atlas import __version__
COMMANDS = { COMMANDS = {
('curate','identifiers'): ('paper_atlas.curation.identifiers', {}, '按证据补充稳定标识并生成独立待导入文件'),
('query',): ('paper_atlas.querying', {}, '查询论文、标签和投稿历史'), ('query',): ('paper_atlas.querying', {}, '查询论文、标签和投稿历史'),
('coverage',): ('paper_atlas.audits.coverage', {}, '查看全部候选会议的覆盖情况'), ('coverage',): ('paper_atlas.audits.coverage', {}, '查看全部候选会议的覆盖情况'),
('download',): ('paper_atlas.io.snapshots', {}, '下载并校验固定版本快照'), ('download',): ('paper_atlas.io.snapshots', {}, '下载并校验固定版本快照'),
@@ -36,7 +35,6 @@ COMMANDS = {
('audit','arxiv'): ('paper_atlas.audits.arxiv', {}, '核验 arXiv 原始编号、重复行与 ZIP 完整性'), ('audit','arxiv'): ('paper_atlas.audits.arxiv', {}, '核验 arXiv 原始编号、重复行与 ZIP 完整性'),
('audit','arxiv-tags'): ('paper_atlas.audits.arxiv_tags', {}, '逐记录核验 arXiv 类别及出处完整性'), ('audit','arxiv-tags'): ('paper_atlas.audits.arxiv_tags', {}, '逐记录核验 arXiv 类别及出处完整性'),
('audit','public-openreview'): ('paper_atlas.audits.public_openreview', {}, '核对公开负面决定与已有投稿历史'), ('audit','public-openreview'): ('paper_atlas.audits.public_openreview', {}, '核对公开负面决定与已有投稿历史'),
('audit','histories'): ('paper_atlas.audits.histories', {}, '只读核对跨会议投稿历史及决定来源关系'),
} }
@@ -49,7 +47,7 @@ def main(argv=None):
leaf=commands.add_parser(route[0],help=help_text,add_help=False) leaf=commands.add_parser(route[0],help=help_text,add_help=False)
else: else:
if route[0] not in groups: if route[0] not in groups:
group=commands.add_parser(route[0],help={'collect':'采集来源元数据','catalogue':'盘点历史目录','import':'导入数据库','maintain':'维护数据库','audit':'核验数据','curate':'按证据整理元数据'}[route[0]]) group=commands.add_parser(route[0],help={'collect':'采集来源元数据','catalogue':'盘点历史目录','import':'导入数据库','maintain':'维护数据库','audit':'核验数据'}[route[0]])
groups[route[0]]=group.add_subparsers(dest='operation',required=True) groups[route[0]]=group.add_subparsers(dest='operation',required=True)
leaf=groups[route[0]].add_parser(route[1],help=help_text,add_help=False) leaf=groups[route[0]].add_parser(route[1],help=help_text,add_help=False)
leaf.set_defaults(handler=(route,module,kwargs)) leaf.set_defaults(handler=(route,module,kwargs))
+35 -4
View File
@@ -27,11 +27,25 @@ RAW_ROOT = 'https://raw.githubusercontent.com/papercopilot/openreview/' + REVISI
TREE_URL = 'https://api.github.com/repos/papercopilot/openreview/git/trees/' + REVISION + '?recursive=1' TREE_URL = 'https://api.github.com/repos/papercopilot/openreview/git/trees/' + REVISION + '?recursive=1'
NEGATIVE = {'reject': 'rejected', 'rejected': 'rejected', NEGATIVE = {'reject': 'rejected', 'rejected': 'rejected',
'desk reject': 'desk_rejected', 'desk rejected': 'desk_rejected', 'desk reject': 'desk_rejected', 'desk rejected': 'desk_rejected',
'withdrawn': 'withdrawn', 'withdrawal': 'withdrawn'} 'withdraw': 'withdrawn', 'withdrawn': 'withdrawn', 'withdrawal': 'withdrawn'}
TRACKS = {'main': 'main', 'Position': 'position', TRACKS = {'main': 'main', 'Position': 'position',
'Datasets & Benchmarks': 'datasets_benchmarks'} 'Datasets & Benchmarks': 'datasets_benchmarks'}
WORKSHOP_REJECT_LABELS = {"aim-fm workshop @ neurips'24 reject", WORKSHOP_REJECT_LABELS = {"aim-fm workshop @ neurips'24 reject",
'coginterp @ neurips 2025 reject'} 'coginterp @ neurips 2025 reject'}
# Exact curated labels, tied to the year and raw workshop track. The official
# venue directory establishes workshop identity, not an original decision signature.
ICLR_WORKSHOP_LABELS = {
'iclr 2024 workshop mefomo withdrawn submission':
(2024, 'workshop_me_fomo', 'withdrawn', 'ME-FoMo'),
'iclr 2024 workshop genai4dm withdrawn submission':
(2024, 'workshop_genai4dm', 'withdrawn', 'GenAI4DM'),
'iclr 2025 workshop agenticai reject':
(2025, 'workshop_agenticai', 'rejected', 'AgenticAI'),
'iclr 2025 workshop lmrl withdrawn submission':
(2025, 'workshop_lmrl', 'withdrawn', 'LMRL'),
'iclr 2026 workshop llm reasoning withdrawn submission':
(2026, 'workshop_llm_reasoning', 'withdrawn', 'LLM_Reasoning'),
}
def download(url, limit): def download(url, limit):
@@ -63,6 +77,20 @@ def normalize(row, family, year, provenance, include_workshops=False):
"""Return a normalized assertion or a reason requiring separate review.""" """Return a normalized assertion or a reason requiring separate review."""
raw_status = row.get('status', '') raw_status = row.get('status', '')
status = negative_status(raw_status) status = negative_status(raw_status)
workshop = ICLR_WORKSHOP_LABELS.get(' '.join(raw_status.casefold().split()))
workshop_metadata = {}
if workshop:
expected_year, expected_track, status, group_name = workshop
if family != 'iclr' or year != expected_year:
raise ValueError('Workshop status label conflicts with source conference year')
if row.get('track') != expected_track:
return None, 'conflicting_workshop_track'
if not include_workshops:
return None, 'separate_workshop'
workshop_metadata = {
'workshop_venueid': f'ICLR.cc/{year}/Workshop/{group_name}',
'workshop_identity_evidence_url': 'https://openreview.net/venue?id=ICLR.cc',
}
if status is None: if status is None:
if re.search(r'\bretract\w*\b', raw_status, re.I): if re.search(r'\bretract\w*\b', raw_status, re.I):
return None, 'retracted' return None, 'retracted'
@@ -90,7 +118,9 @@ def normalize(row, family, year, provenance, include_workshops=False):
return None, 'unmapped_venue' return None, 'unmapped_venue'
title = row.get('title') title = row.get('title')
abstract = row.get('abstract') abstract = row.get('abstract')
if not isinstance(title, str) or not title.strip(): if title is None or (isinstance(title, str) and not title.strip()):
return None, 'missing_title'
if not isinstance(title, str):
raise ValueError('Public submission lacks a title') raise ValueError('Public submission lacks a title')
if abstract is not None and not isinstance(abstract, str): if abstract is not None and not isinstance(abstract, str):
raise ValueError('Abstract must be text or null') raise ValueError('Abstract must be text or null')
@@ -116,7 +146,8 @@ def normalize(row, family, year, provenance, include_workshops=False):
'venue': venue, 'year': year, 'track': normalized_track, 'venue': venue, 'year': year, 'track': normalized_track,
'status': status, 'raw_decision': raw_status, 'evidence_url': evidence, 'status': status, 'raw_decision': raw_status, 'evidence_url': evidence,
'observed_at': AS_OF, 'tags': tags, 'observed_at': AS_OF, 'tags': tags,
'metadata': {**provenance, 'raw_track': track, 'raw_status': raw_status, 'metadata': {**provenance, **workshop_metadata,
'raw_track': track, 'raw_status': raw_status,
'evidence_kind': 'curated_public_status_assertion', 'evidence_kind': 'curated_public_status_assertion',
'original_decision_signature_verified': False, 'original_decision_signature_verified': False,
'source_snapshot_upper_bound': AS_OF}}, None 'source_snapshot_upper_bound': AS_OF}}, None
@@ -215,7 +246,7 @@ def _collect_files(out, selected, include_workshops, fetcher):
name = f'public-openreview-{family}-{year}-{track}.jsonl' name = f'public-openreview-{family}-{year}-{track}.jsonl'
path = stage / name path = stage / name
path.write_text(''.join(json.dumps(row, ensure_ascii=False) + '\n' for row in records)) path.write_text(''.join(json.dumps(row, ensure_ascii=False) + '\n' for row in records))
manifest = {'source': SOURCE, 'parser_version': 1, 'venue': records[0]['venue'], manifest = {'source': SOURCE, 'parser_version': 3, 'venue': records[0]['venue'],
'year': year, 'track': track, 'count': len(records), 'status': 'partial', 'year': year, 'track': track, 'count': len(records), 'status': 'partial',
'file': str(out / name), 'file_sha256': hashlib.sha256(path.read_bytes()).hexdigest(), 'file': str(out / name), 'file_sha256': hashlib.sha256(path.read_bytes()).hexdigest(),
'list_url': REPOSITORY + '/tree/' + REVISION, 'source_revision': REVISION, 'list_url': REPOSITORY + '/tree/' + REVISION, 'source_revision': REVISION,
-1
View File
@@ -1 +0,0 @@
"""Offline, evidence-bound preparation of metadata for separate ingestion."""
-212
View File
@@ -1,212 +0,0 @@
"""Add reviewed stable identifiers without rewriting bibliographic source fields.
Hashes establish file integrity, not the truth of an identity assertion. Identity
review and a fresh database preflight remain separate requirements.
"""
import argparse
from datetime import datetime
import hashlib
import json
from pathlib import Path
import re
import tempfile
from urllib.parse import urlsplit
SCOPE = 'input_and_evidence_integrity_only'
MAX_METADATA_BYTES = 16 * 1024 * 1024
def digest(data):
return hashlib.sha256(data).hexdigest()
def object_keys(value, required, optional=()):
if not isinstance(value, dict) or not set(required) <= value.keys() or value.keys() - set(required) - set(optional):
raise ValueError('Missing or unsupported plan fields')
def json_bytes(value):
return (json.dumps(value, ensure_ascii=False, separators=(',', ':'), allow_nan=False) + '\n').encode('utf-8')
def decode(raw):
def unique(pairs):
result = {}
for key, value in pairs:
if key in result:
raise ValueError('Duplicate JSON key: ' + key)
result[key] = value
return result
return json.loads(raw, object_pairs_hook=unique,
parse_constant=lambda value: (_ for _ in ()).throw(ValueError('Non-finite JSON value')))
def metadata(path, expected=None):
with Path(path).open('rb') as stream:
raw = stream.read(MAX_METADATA_BYTES + 1)
if len(raw) > MAX_METADATA_BYTES:
raise ValueError('Metadata exceeds size limit')
if expected is not None:
check_hash(raw, expected)
return raw, decode(raw)
def check_hash(raw, expected):
if not isinstance(expected, str) or not re.fullmatch('[0-9a-f]{64}', expected) or digest(raw) != expected:
raise ValueError('SHA256 mismatch')
def identifier(scheme, value):
if not isinstance(value, str) or any(char.isspace() or ord(char) < 32 or ord(char) == 127 for char in value):
raise ValueError('Invalid identifier')
if scheme == 'arxiv':
pattern = r'(?:\d{2}(?:0[1-9]|1[0-2])\.\d{4,5}|[a-zA-Z][a-zA-Z.-]*/\d{2}(?:0[1-9]|1[0-2])\d{3})'
valid = re.fullmatch(pattern, value)
elif scheme == 'doi':
valid = re.fullmatch(r'10\.\d{4,9}/\S+', value) and value == value.lower()
else:
valid = False
if not valid:
raise ValueError('Unsupported or noncanonical identifier: ' + scheme)
def prepare(plan_path, output):
plan_raw, plan = metadata(plan_path)
object_keys(plan, ('format_version', 'inputs', 'assertions'))
if type(plan['format_version']) is not int or plan['format_version'] != 1:
raise ValueError('Unsupported format version')
if not isinstance(plan['inputs'], list) or not plan['inputs'] or not isinstance(plan['assertions'], list) or not plan['assertions']:
raise ValueError('Inputs and assertions must be nonempty lists')
output = Path(output).absolute()
if output.exists():
raise ValueError('Output directory must not already exist')
if not output.parent.is_dir():
raise ValueError('Output parent directory must exist')
assertions = {}
evidence_files = {}
checked_evidence = {}
for assertion in plan['assertions']:
object_keys(assertion, ('source', 'external_id', 'record_sha256', 'identifiers', 'evidence'))
if any(not isinstance(assertion[key], str) or not assertion[key] for key in ('source', 'external_id')):
raise ValueError('Invalid source identity')
key = (assertion['source'], assertion['external_id'])
if key in assertions:
raise ValueError('Duplicate identity assertion')
ids = assertion['identifiers']
if not isinstance(ids, dict) or not ids:
raise ValueError('Identifiers must be a nonempty object')
for scheme, value in ids.items():
identifier(scheme, value)
if not isinstance(assertion['evidence'], list) or not assertion['evidence']:
raise ValueError('Evidence is required')
references = []
for evidence in assertion['evidence']:
object_keys(evidence, ('file', 'sha256', 'url', 'checked_at', 'note'))
if not all(isinstance(value, str) and value for value in evidence.values()):
raise ValueError('Invalid evidence fields')
url = urlsplit(evidence['url'])
if url.scheme != 'https' or not url.hostname or url.username or url.password:
raise ValueError('Evidence requires an HTTPS URL without credentials')
if datetime.fromisoformat(evidence['checked_at'].replace('Z', '+00:00')).utcoffset() is None:
raise ValueError('Evidence timestamp requires a timezone')
evidence_key = (str(Path(evidence['file']).absolute()), evidence['sha256'])
if evidence_key not in checked_evidence:
checked_evidence[evidence_key] = metadata(evidence['file'], evidence['sha256'])[0]
raw = checked_evidence[evidence_key]
evidence_files[evidence['sha256']] = raw
references.append({**evidence, 'file': 'evidence/' + evidence['sha256'] + '.json'})
assertions[key] = (assertion, references)
seen = set()
applied = set()
names = set()
report = {'format_version': 1, 'plan_sha256': digest(plan_raw),
'verification_scope': SCOPE, 'semantic_identity_verified': False,
'database_written': False, 'files': [], 'assertions_applied': 0, 'identifiers_added': 0}
with tempfile.TemporaryDirectory(prefix='.identifier-curation-', dir=output.parent) as temporary:
staging = Path(temporary) / 'prepared'
staging.mkdir()
(staging / 'evidence').mkdir()
(staging / 'plan.json').write_bytes(plan_raw)
for sha, raw in evidence_files.items():
(staging / 'evidence' / (sha + '.json')).write_bytes(raw)
for entry in plan['inputs']:
object_keys(entry, ('file', 'sha256', 'manifest_sha256'))
path = Path(entry['file'])
if path.suffix != '.jsonl' or path.name in names:
raise ValueError('Inputs require distinct JSONL basenames')
names.add(path.name)
_, manifest = metadata(path.with_suffix('.manifest.json'), entry['manifest_sha256'])
if not isinstance(manifest, dict) or not {'source','venue','year','track','count','list_url','file_sha256'} <= manifest.keys():
raise ValueError('Complete source manifest required')
if manifest['file_sha256'] != entry['sha256']:
raise ValueError('Manifest and plan hashes differ')
before = hashlib.sha256()
after = hashlib.sha256()
count = 0
with path.open('rb') as source, (staging / path.name).open('wb') as target:
for raw in source:
before.update(raw)
row = decode(raw)
if any(row[field] != manifest[field] for field in ('source', 'venue', 'year', 'track')):
raise ValueError('Record differs from source manifest')
key = (row['source'], row['external_id'])
if key in seen:
raise ValueError('Duplicate source identity in input batch')
seen.add(key)
if key in assertions:
assertion, references = assertions[key]
check_hash(raw, assertion['record_sha256'])
existing = row.get('identifiers', {})
if existing is None:
existing = {}
if not isinstance(existing, dict):
raise ValueError('Invalid existing identifiers')
for scheme, value in assertion['identifiers'].items():
if scheme in existing and existing[scheme] != value:
raise ValueError('Existing identifier conflict')
details = row.setdefault('metadata', {})
if not isinstance(details, dict):
raise ValueError('Invalid record metadata')
history = details.setdefault('identifier_curation', [])
if not isinstance(history, list):
raise ValueError('Invalid curation history')
history.append({'plan_sha256': digest(plan_raw), 'input_file_sha256': entry['sha256'],
'record_sha256': digest(raw), 'previous_identifiers': dict(existing),
'identifiers_asserted': assertion['identifiers'], 'evidence': references,
'verification_scope': SCOPE})
report['identifiers_added'] += len(assertion['identifiers'].keys() - existing.keys())
row['identifiers'] = {**existing, **assertion['identifiers']}
raw = json_bytes(row)
applied.add(key)
target.write(raw)
after.update(raw)
count += 1
if before.hexdigest() != entry['sha256'] or not re.fullmatch('[0-9a-f]{64}', entry['sha256']):
raise ValueError('Input SHA256 mismatch')
if not count or type(manifest['count']) is not int or count != manifest['count']:
raise ValueError('Manifest count mismatch')
provenance = {'plan_sha256': digest(plan_raw), 'input_file_sha256': before.hexdigest(),
'input_manifest_sha256': entry['manifest_sha256'], 'verification_scope': SCOPE}
prepared = {**manifest, 'file': str(output / path.name), 'file_sha256': after.hexdigest(),
'identifier_curation': provenance}
(staging / path.with_suffix('.manifest.json').name).write_bytes(json_bytes(prepared))
report['files'].append({'file': str(output / path.name), 'count': count,
'input_sha256': before.hexdigest(), 'sha256': after.hexdigest()})
if applied != assertions.keys():
raise ValueError('Assertion target absent from input batch')
report['assertions_applied'] = len(applied)
(staging / 'curation-report.json').write_bytes(json_bytes(report))
# All files are on the same filesystem. No database or input mutation.
if output.exists():
raise ValueError('Output directory appeared during preparation')
staging.rename(output)
return report
def main(argv=None, *, prog=None):
parser = argparse.ArgumentParser(prog=prog, description=__doc__)
parser.add_argument('--plan', required=True, type=Path)
parser.add_argument('--output', required=True, type=Path)
args = parser.parse_args(argv)
print(json.dumps(prepare(args.plan, args.output), ensure_ascii=False))
+7 -13
View File
@@ -95,19 +95,13 @@ class Store:
matches.add(old[0]) matches.add(old[0])
key = normalized(title) key = normalized(title)
title_matches = c.execute('SELECT id,authors_json,abstract FROM papers WHERE title_key=?',(key,)).fetchall() title_matches = c.execute('SELECT id,authors_json,abstract FROM papers WHERE title_key=?',(key,)).fetchall()
# An existing identifier/source record anchors the entity. Title authors_set = author_keys(authors)
# similarity must not pull in another deposit or an extended version. for paper,old_authors,old_abstract in title_matches:
if not matches: overlap = authors_set & author_keys(json.loads(old_authors))
title_only_matches = set() # Cross-platform title matching needs independent author corroboration.
authors_set = author_keys(authors) same_source = c.execute('SELECT 1 FROM source_records WHERE paper_id=? AND source_id=? LIMIT 1',(paper,source_id)).fetchone()
for paper,old_authors,old_abstract in title_matches: if not same_source and len(key)>=25 and (len(overlap)>=2 or (overlap and abstract and abstract.strip()==(old_abstract or '').strip())):
overlap = authors_set & author_keys(json.loads(old_authors)) matches.add(paper)
same_source = c.execute('SELECT 1 FROM source_records WHERE paper_id=? AND source_id=? LIMIT 1',(paper,source_id)).fetchone()
if not same_source and len(key)>=25 and (len(overlap)>=2 or (overlap and abstract and abstract.strip()==(old_abstract or '').strip())):
title_only_matches.add(paper)
if len(title_only_matches)>1:
raise ValueError('Ambiguous paper identity: multiple author-corroborated title matches; provide verified identifiers')
matches = title_only_matches
if matches: if matches:
paper = min(matches) paper = min(matches)
for other in sorted(matches-{paper}): for other in sorted(matches-{paper}):
-114
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@@ -1,114 +0,0 @@
from pathlib import Path
import tempfile
import unittest
from paper_atlas.audits.histories import report
from paper_atlas.db.store import Store
def add_history_fixture(store):
def event(work, forum, venue, year, track, status, observed):
paper, record = store.record('history_fixture', work + '/' + forum,
'https://example.org/' + forum, work + ' title\x00 preserved', 'Abstract', ['Jane Doe'],
{'arxiv': work})
store.decision(paper, record, venue, year, track, forum,
'https://example.org/' + forum + '/' + str(status), status, status or '',
identities=[('openreview', forum)], observed_at=observed)
return paper
# The negative observation was collected later: observation order is not chronology.
event('2501.00001', 'HistoryA01', 'ICLR', 2024, 'main', 'rejected', '2026-02-01T00:00:00Z')
event('2501.00001', 'HistoryA02', 'ICML', 2025, 'main', 'accepted', '2026-01-01T00:00:00Z')
event('2501.00002', 'HistoryB01', 'ICLR', 2024, 'main', 'rejected', '2026-01-01T00:00:00Z')
event('2501.00002', 'HistoryB01', 'ICLR', 2024, 'main', 'accepted', '2026-02-01T00:00:00Z')
event('2501.00003', 'HistoryC01', 'ICLR', 2024, 'main', 'desk_rejected', '2026-01-01T00:00:00Z')
event('2501.00003', 'HistoryC02', 'ICLR', 2024, 'workshop_example', 'accepted', '2026-02-01T00:00:00Z')
event('2501.00004', 'HistoryD01', 'ICML', 2025, 'main', 'accepted', '2026-01-01T00:00:00Z')
event('2501.00004', 'HistoryD01', 'ICML', 2025, 'main', 'withdrawn', '2026-02-01T00:00:00Z')
event('2501.00004', 'HistoryD02', 'ICLR', 2024, 'main', 'rejected', '2026-01-01T00:00:00Z')
event('2501.00005', 'HistoryE01', 'COLM', 2026, 'main', None, '2026-01-01T00:00:00Z')
store.conn.commit()
class HistoryTests(unittest.TestCase):
def setUp(self):
self.tmp = tempfile.TemporaryDirectory()
self.addCleanup(self.tmp.cleanup)
self.db = Path(self.tmp.name) / 'sample.sqlite'
self.store = Store(self.db)
self.addCleanup(self.store.conn.close)
def test_distinct_attempts_venues_and_latest_acceptances_are_not_observation_counts(self):
add_history_fixture(self.store)
result = report(self.db)
self.assertEqual(result['counts'], {
'papers_with_submissions': 5, 'papers_with_multiple_submissions': 3,
'papers_with_historical_negative': 4, 'papers_with_current_known_acceptance': 3,
'papers_with_negative_and_acceptance_in_distinct_attempts': 2,
'papers_with_negative_and_acceptance_in_distinct_venues': 1,
'submissions': 8, 'decision_observations': 9,
'attempts_with_historical_negative': 5,
'attempts_with_historical_negative_and_acceptance': 2,
})
self.assertEqual(result['latest_attempt_status_counts'],
{'accepted': 3, 'desk_rejected': 1, 'rejected': 2, 'unknown': 1, 'withdrawn': 1})
self.assertEqual(len(result['examples']), 2)
first = result['examples'][0]
self.assertIn('\x00', first['title'])
self.assertEqual({r['venue'] for r in first['attempts']}, {'ICLR', 'ICML'})
self.assertTrue(all(r['decisions'][0]['sources'] for r in first['attempts']))
self.assertTrue(all(r['decisions'][0]['decision_date'] is None for r in first['attempts']))
self.assertIn('Not inferred', first['chronology'])
self.assertEqual(result['status'], 'observed_history_audit_not_final_dedup')
self.assertTrue(all(v == 0 for v in result['evidence_relationship_checks'].values()))
def test_missing_and_mislinked_source_evidence_is_reported_without_repair(self):
add_history_fixture(self.store)
self.store.conn.execute('DELETE FROM decision_sources WHERE decision_id=1')
self.store.conn.execute('DELETE FROM submission_sources WHERE submission_id=1')
# Record3 belongs to paper2; move it to paper1 to create a real mismatch.
self.store.conn.execute('UPDATE source_records SET paper_id=1 WHERE id=3')
self.store.conn.commit()
result = report(self.db, examples=0)
checks = result['evidence_relationship_checks']
self.assertEqual(checks['decisions_without_source_links'], 1)
self.assertEqual(checks['submissions_without_source_links'], 1)
self.assertEqual(checks['submission_source_paper_mismatches'], 1)
self.assertEqual(checks['decision_source_paper_mismatches'], 2)
self.assertEqual(self.store.conn.execute('SELECT paper_id FROM source_records WHERE id=3').fetchone()[0], 1)
def test_example_limit_does_not_change_global_counts(self):
add_history_fixture(self.store)
none, one = report(self.db, examples=0), report(self.db, examples=1)
self.assertEqual(none['counts'], one['counts'])
self.assertEqual(none['examples'], [])
self.assertEqual(len(one['examples']), 1)
def test_empty_snapshot_and_invalid_limit_do_not_create_missing_database(self):
empty = report(self.db)
self.assertTrue(all(v == 0 for v in empty['counts'].values()))
self.assertEqual(empty['latest_attempt_status_counts'], {})
absent = self.db.parent / 'absent.sqlite'
with self.assertRaisesRegex(ValueError, 'Examples'):
report(absent, examples=-1)
with self.assertRaisesRegex(ValueError, 'Existing database'):
report(absent)
self.assertFalse(absent.exists())
def test_truncated_example_keeps_the_cross_venue_acceptance_visible(self):
paper, record = self.store.record('fixture', 'many', 'https://example.org/many',
'Many attempts', 'Abstract', [])
for index in range(26):
accepted = index == 25
forum = f'BoundedForum{index}'
self.store.decision(paper, record, 'ICML' if accepted else 'ICLR', 2025, 'main', forum,
'https://example.org/' + forum, 'accepted' if accepted else 'rejected',
'Accept' if accepted else 'Reject', identities=[('openreview', forum)])
self.store.conn.commit()
result = report(self.db)
example, = result['examples']
self.assertEqual((example['attempt_count'], len(example['attempts'])), (26, 20))
self.assertTrue(example['attempts_truncated'])
self.assertEqual({row['latest_observed_status'] for row in example['attempts']},
{'accepted', 'rejected'})
self.assertEqual(result['counts']['submissions'], 26)
-185
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@@ -1,185 +0,0 @@
import copy
import json
from pathlib import Path
import tempfile
import unittest
from paper_atlas.curation.identifiers import SCOPE, digest, json_bytes, prepare
from paper_atlas.db.store import Store
from paper_atlas.ingestion.records import ingest_file
class IdentifierCurationTests(unittest.TestCase):
def setUp(self):
self.tmp = tempfile.TemporaryDirectory()
self.addCleanup(self.tmp.cleanup)
self.root = Path(self.tmp.name)
self.output = self.root / 'prepared'
self.row = {'source':'dblp','external_id':'conf/uai/example','url':'https://example.org/paper',
'title':'A sufficiently long example research paper title','abstract':None,
'authors':['Jane Doe','John Smith'],'venue':'UAI','year':2001,'track':'main',
'status':'accepted','tags':[{'namespace':'dblp:topic','value':'version\u2029study\x00'}],
'metadata':{'pages':'203-210','raw_title':'Original\u2029title'}}
self.evidence = self.root / 'evidence.json'
self.evidence.write_bytes(json_bytes({'url':'https://example.org/archive','comment':'Conference version'}))
self.path = self.root / 'records.jsonl'
self.raw = json_bytes(self.row)
self.path.write_bytes(self.raw)
self.manifest = {'source':'dblp','venue':'UAI','year':2001,'track':'main','count':1,
'list_url':'https://example.org/list','file_sha256':digest(self.raw),
'status':'partial','missing_abstract_count':1,'parser_version':2}
self.path.with_suffix('.manifest.json').write_bytes(json_bytes(self.manifest))
self.plan = {'format_version':1,'inputs':[self.input(self.path)],'assertions':[
{'source':'dblp','external_id':self.row['external_id'],'record_sha256':digest(self.raw),
'identifiers':{'arxiv':'1408.1485'},'evidence':[{
'file':str(self.evidence),'sha256':digest(self.evidence.read_bytes()),
'url':'https://example.org/archive','checked_at':'2026-11-08T08:00:00Z',
'note':'Reviewed title, authors, publication and version evidence'}]}]}
def input(self, path):
return {'file':str(path),'sha256':digest(path.read_bytes()),
'manifest_sha256':digest(path.with_suffix('.manifest.json').read_bytes())}
def run_plan(self, plan=None):
path = self.root / 'plan.json'
path.write_bytes(json_bytes(self.plan if plan is None else plan))
return prepare(path, self.output)
def test_only_identifiers_and_provenance_change_and_raw_inputs_survive(self):
result = self.run_plan()
self.assertEqual(self.path.read_bytes(), self.raw)
prepared = json.loads((self.output / self.path.name).read_bytes())
provenance = prepared['metadata'].pop('identifier_curation')
self.assertEqual(prepared.pop('identifiers'), {'arxiv':'1408.1485'})
self.assertEqual(prepared, self.row)
self.assertEqual(provenance[0]['record_sha256'], digest(self.raw))
self.assertEqual((self.output / provenance[0]['evidence'][0]['file']).read_bytes(), self.evidence.read_bytes())
manifest = json.loads((self.output / 'records.manifest.json').read_bytes())
for key, value in self.manifest.items():
if key != 'file_sha256': self.assertEqual(manifest[key], value)
self.assertEqual(manifest['file_sha256'], digest((self.output / self.path.name).read_bytes()))
self.assertEqual(result['assertions_applied'], 1)
self.assertEqual(result['identifiers_added'], 1)
self.assertEqual(result['verification_scope'], SCOPE)
self.assertFalse(result['semantic_identity_verified'])
self.assertFalse(result['database_written'])
self.assertEqual(list(self.output.glob('*.jsonl')), [self.output / self.path.name])
with self.assertRaisesRegex(ValueError, 'already exist'): self.run_plan()
def test_late_invalid_file_publishes_nothing(self):
second = self.root / 'second.jsonl'
second.write_bytes(json_bytes({**self.row,'external_id':'second'}))
manifest = {**self.manifest,'file_sha256':digest(second.read_bytes()),'count':2}
second.with_suffix('.manifest.json').write_bytes(json_bytes(manifest))
self.plan['inputs'].append(self.input(second))
with self.assertRaisesRegex(ValueError, 'count mismatch'): self.run_plan()
self.assertFalse(self.output.exists())
self.assertFalse(list(self.root.glob('.identifier-curation-*')))
self.assertEqual(self.path.read_bytes(), self.raw)
def test_unasserted_rows_keep_exact_physical_bytes_and_doi_is_additive(self):
untouched = (json.dumps({**self.row,'external_id':'unselected'},ensure_ascii=False,indent=None) + ' ').encode()
self.path.write_bytes(self.raw + untouched)
self.path.with_suffix('.manifest.json').write_bytes(json_bytes({**self.manifest,
'file_sha256':digest(self.path.read_bytes()),'count':2,'missing_abstract_count':2}))
self.plan['inputs'] = [self.input(self.path)]
self.plan['assertions'][0]['identifiers']['doi'] = '10.1234/example'
result = self.run_plan()
with (self.output / self.path.name).open('rb') as stream:
first = json.loads(next(stream))
self.assertEqual(next(stream), untouched)
self.assertEqual(first['identifiers'], {'arxiv':'1408.1485','doi':'10.1234/example'})
self.assertEqual(result['identifiers_added'], 2)
def test_missing_duplicate_and_mismatched_assertions_fail_closed(self):
for mode in ('missing','duplicate','line_hash','duplicate_input'):
with self.subTest(mode=mode):
plan = copy.deepcopy(self.plan)
assertion = plan['assertions'][0]
if mode == 'missing': assertion['external_id'] = 'absent'
elif mode == 'duplicate': plan['assertions'].append(copy.deepcopy(assertion))
elif mode == 'line_hash': assertion['record_sha256'] = '0' * 64
else:
other = self.root / 'duplicate.jsonl'
other.write_bytes(self.raw)
other.with_suffix('.manifest.json').write_bytes(json_bytes(self.manifest))
plan['inputs'].append(self.input(other))
with self.assertRaises(ValueError): self.run_plan(plan)
self.assertFalse(self.output.exists())
def test_identifier_conflict_does_not_overwrite_and_same_value_is_auditable(self):
self.row['identifiers'] = {'arxiv':'cs/0307069'}
self.path.write_bytes(json_bytes(self.row))
self.manifest['file_sha256'] = digest(self.path.read_bytes())
self.path.with_suffix('.manifest.json').write_bytes(json_bytes(self.manifest))
self.plan['inputs'] = [self.input(self.path)]
self.plan['assertions'][0]['record_sha256'] = digest(self.path.read_bytes())
with self.assertRaisesRegex(ValueError, 'identifier conflict'): self.run_plan()
self.assertFalse(self.output.exists())
self.plan['assertions'][0]['identifiers']['arxiv'] = 'cs/0307069'
self.assertEqual(self.run_plan()['identifiers_added'], 0)
def test_unsupported_changes_identifiers_and_unbound_evidence_are_rejected(self):
for mode in ('title','bad_month','version','unknown_scheme','doi_case','evidence_hash','credentials','timestamp'):
with self.subTest(mode=mode):
plan = copy.deepcopy(self.plan)
assertion = plan['assertions'][0]
evidence = assertion['evidence'][0]
if mode == 'title': assertion['title'] = 'Rewrite forbidden'
elif mode == 'bad_month': assertion['identifiers'] = {'arxiv':'1413.12345'}
elif mode == 'version': assertion['identifiers'] = {'arxiv':'1408.1485v2'}
elif mode == 'unknown_scheme': assertion['identifiers'] = {'url':'https://example.org'}
elif mode == 'doi_case': assertion['identifiers'] = {'doi':'10.1234/UPPER'}
elif mode == 'evidence_hash': evidence['sha256'] = '0' * 64
elif mode == 'credentials': evidence['url'] = 'https://user:secret@example.org'
else: evidence['checked_at'] = '2026-11-08T08:00:00'
with self.assertRaises(ValueError): self.run_plan(plan)
self.assertFalse(self.output.exists())
def test_input_and_manifest_hashes_and_duplicate_json_keys_are_checked(self):
for mode in ('input','manifest','duplicate_json','invalid_evidence_json'):
with self.subTest(mode=mode):
plan = copy.deepcopy(self.plan)
if mode == 'input':
plan['inputs'][0]['sha256'] = '0' * 64
elif mode == 'manifest':
plan['inputs'][0]['manifest_sha256'] = '0' * 64
elif mode == 'duplicate_json':
raw = self.raw[:-2] + b',"source":"dblp"}\n'
self.path.write_bytes(raw)
self.path.with_suffix('.manifest.json').write_bytes(json_bytes({**self.manifest,'file_sha256':digest(raw)}))
plan['inputs'] = [self.input(self.path)]
else:
self.evidence.write_bytes(b'not json')
plan['assertions'][0]['evidence'][0]['sha256'] = digest(self.evidence.read_bytes())
with self.assertRaises(ValueError): self.run_plan(plan)
self.assertFalse(self.output.exists())
self.path.write_bytes(self.raw)
self.path.with_suffix('.manifest.json').write_bytes(json_bytes(self.manifest))
def test_curated_anchor_import_does_not_merge_extended_version_or_its_history(self):
db = self.root / 'papers.sqlite'
store = Store(db)
try:
original, _ = store.record('arxiv','1408.1485','https://example.org/one',self.row['title'],None,self.row['authors'],{'arxiv':'1408.1485'})
extended, record = store.record('arxiv','cs/0307069','https://example.org/two',self.row['title'],None,self.row['authors'],{'arxiv':'cs/0307069'})
store.decision(extended,record,'ICLR',2025,'main','another-attempt','https://example.org/reject','rejected','Reject')
store.conn.commit()
finally:
store.conn.close()
self.run_plan()
ingest_file(db,self.output / self.path.name)
store = Store(db)
try:
c = store.conn
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0], 2)
self.assertEqual(c.execute('SELECT paper_id FROM source_records WHERE external_id=?',(self.row['external_id'],)).fetchone()[0], original)
self.assertEqual(c.execute('SELECT s.paper_id FROM submissions s JOIN editions e ON e.id=s.edition_id JOIN venues v ON v.id=e.venue_id WHERE v.acronym=?',('ICLR',)).fetchone()[0], extended)
self.assertEqual(c.execute('SELECT count(*) FROM paper_merges').fetchone()[0], 0)
self.assertEqual(c.execute('PRAGMA foreign_key_check').fetchall(), [])
finally:
store.conn.close()
if __name__ == '__main__':
unittest.main()
-44
View File
@@ -53,50 +53,6 @@ class StoreTests(unittest.TestCase):
self.assertNotEqual(other,paper) self.assertNotEqual(other,paper)
self.assertEqual(self.store.conn.execute('SELECT count(*) FROM match_candidates').fetchone()[0],1) self.assertEqual(self.store.conn.execute('SELECT count(*) FROM match_candidates').fetchone()[0],1)
def test_identifier_anchor_does_not_absorb_a_same_title_arxiv_version(self):
conference,first=self.record('arxiv','1408.1485')
extended,second=self.record('arxiv','cs/0307069')
self.store.decision(extended,second,'ICLR',2025,'main','separate','https://example.org/reject','rejected','Reject')
resolved,_=self.record('dblp','conf/uai/example',{'arxiv':'1408.1485'})
self.assertEqual(resolved,conference);self.assertNotEqual(conference,extended)
c=self.store.conn
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0],2)
self.assertEqual(c.execute('SELECT paper_id FROM submissions').fetchone()[0],extended)
self.assertEqual(c.execute('SELECT count(*) FROM paper_merges').fetchone()[0],0)
self.assertEqual(c.execute('SELECT count(*) FROM match_candidates').fetchone()[0],1)
# A refresh of the anchored original source is equally unambiguous.
self.assertEqual(self.record('arxiv','1408.1485')[0],conference)
self.assertEqual(c.execute('SELECT count(*) FROM papers').fetchone()[0],2)
def test_ambiguous_title_aborts_whole_file_without_merging_existing_entities(self):
self.record('arxiv','1408.1485');self.record('arxiv','cs/0307069')
self.store.conn.commit()
rows=[{'source':'dblp','external_id':'conf/uai/new','url':'https://example.org/new',
'title':'An unrelated earlier record in this file','abstract':None,'authors':[],
'venue':'UAI','year':2001,'track':'main','status':'accepted'},
{'source':'dblp','external_id':'conf/uai/ambiguous','url':'https://example.org/ambiguous',
'title':'A sufficiently long example research paper title','abstract':None,
'authors':['Jane Doe','John Smith'],'identifiers':{'doi':'10.0000/not-yet-known'},
'venue':'UAI','year':2001,'track':'main','status':'accepted'}]
path=Path(self.tmp.name)/'ambiguous.jsonl'
path.write_text(''.join(json.dumps(row)+'\n' for row in rows))
path.with_suffix('.manifest.json').write_text(json.dumps({'source':'dblp','list_url':'https://example.org/list','count':2}))
with self.assertRaisesRegex(ValueError,'Ambiguous paper identity'):ingest_file(self.db,path)
c=self.store.conn
for table,count in [('papers',2),('source_records',2),('submissions',0),('decisions',0),('paper_merges',0)]:
self.assertEqual(c.execute('SELECT count(*) FROM '+table).fetchone()[0],count,table)
self.assertEqual(c.execute('SELECT status FROM ingest_runs').fetchone()[0],'failed')
def test_explicit_bridge_merges_only_its_identifier_matches(self):
first,_=self.record('arxiv','2601.00001',authors=['First Author'])
second,_=self.record('arxiv','2601.00002',{'doi':'10.0000/bridge'},authors=['Second Author'])
unrelated,_=self.record('arxiv','2601.00003')
resolved,_=self.record('official','bridge',{'arxiv':'2601.00001','doi':'10.0000/bridge'})
self.assertEqual(resolved,min(first,second))
self.assertEqual(self.store.conn.execute('SELECT count(*) FROM papers').fetchone()[0],2)
self.assertIsNotNone(self.store.conn.execute('SELECT 1 FROM papers WHERE id=?',(unrelated,)).fetchone())
self.assertEqual(self.store.conn.execute('SELECT count(*) FROM paper_merges').fetchone()[0],1)
def test_manifest_count_mismatch_rolls_back_records(self): def test_manifest_count_mismatch_rolls_back_records(self):
path=Path(self.tmp.name)/'source.jsonl' path=Path(self.tmp.name)/'source.jsonl'
path.write_text(json.dumps({'source':'pmlr','external_id':'v1/paper','url':'https://example.org/paper','title':'Paper','abstract':'Abstract','authors':[],'venue':'ICML','year':2023,'track':'main','status':'accepted'})+'\n') path.write_text(json.dumps({'source':'pmlr','external_id':'v1/paper','url':'https://example.org/paper','title':'Paper','abstract':'Abstract','authors':[],'venue':'ICML','year':2023,'track':'main','status':'accepted'})+'\n')
-16
View File
@@ -175,22 +175,6 @@ class PostgreSQLIntegrationTests(unittest.TestCase):
finally: finally:
reader.close() reader.close()
def test_history_audit_matches_sqlite_for_actual_postgresql_snapshot(self):
from paper_atlas.audits.histories import report
from tests.test_histories import add_history_fixture
store = Store(self.db)
try:
add_history_fixture(store)
finally:
store.conn.close()
expected = report(self.db)
self.assertEqual(self.migrate()['status'], 'complete')
actual = report(pg_service=self.service, pg_schema=self.target)
self.assertEqual(actual['engine'], 'postgresql')
self.assertEqual(actual['schema'], self.target)
for key in ('counts', 'latest_attempt_status_counts', 'evidence_relationship_checks', 'examples'):
self.assertEqual(actual[key], expected[key], key)
def interrupt_after_first_table(self): def interrupt_after_first_table(self):
calls = 0 calls = 0
def interrupt(*args): def interrupt(*args):
-28
View File
@@ -110,34 +110,6 @@ class PostgreSQLIngestionTests(unittest.TestCase):
finally: finally:
reader.close() reader.close()
def test_identity_anchor_keeps_other_arxiv_version_and_ambiguous_file_rolls_back(self):
title='An identical long research title shared by conference and extended versions'
authors=['Jane Doe','John Smith']
store=self.store()
try:
first,_=store.record('arxiv','1408.1485','https://arxiv.org/abs/1408.1485',title,'Conference abstract',authors)
second,_=store.record('arxiv','cs/0307069','https://arxiv.org/abs/cs/0307069',title,'Extended abstract',authors)
resolved,_=store.record('dblp','known','https://example.org/known',title,None,authors,{'arxiv':'1408.1485'})
self.assertEqual(resolved,first);self.assertNotEqual(first,second)
store.conn.commit()
self.assertEqual(store.conn.execute('SELECT count(*) FROM papers').fetchone()[0],3)
self.assertEqual(store.conn.execute('SELECT count(*) FROM paper_merges').fetchone()[0],1) # migration fixture only
self.assertEqual(store.conn.execute('SELECT count(*) FROM match_candidates').fetchone()[0],1)
finally:store.conn.close()
rows=[self.row('official','earlier',status='accepted',venue='UAI',year=2001),
dict(self.row('official','ambiguous',status='accepted',venue='UAI',year=2001),
title=title,abstract=None,authors=authors,identifiers={})]
with self.assertRaisesRegex(ValueError,'Ambiguous paper identity'):self.ingest(self.file('ambiguous-identity',rows))
store=self.store()
try:
self.assertEqual(store.conn.execute('SELECT count(*) FROM papers').fetchone()[0],3)
self.assertEqual(store.conn.execute('SELECT count(*) FROM source_records').fetchone()[0],4)
self.assertEqual(store.conn.execute('SELECT count(*) FROM submissions').fetchone()[0],1)
self.assertEqual(store.conn.execute('SELECT count(*) FROM paper_merges').fetchone()[0],1)
self.assertEqual(store.conn.execute('SELECT status FROM ingest_runs ORDER BY id DESC LIMIT 1').fetchone()[0],'failed')
self.assertEqual(store.conn.execute("SELECT count(*) FROM source_records WHERE external_id IN (?,?)",('earlier','ambiguous')).fetchone()[0],0)
finally:store.conn.close()
def test_file_import_is_idempotent_and_refreshes_only_own_tags(self): def test_file_import_is_idempotent_and_refreshes_only_own_tags(self):
row = self.row(); row['tags'] = [{'namespace': 'openreview_snapshot:area', 'value': 'theory'}] row = self.row(); row['tags'] = [{'namespace': 'openreview_snapshot:area', 'value': 'theory'}]
path = self.file('reject', [row]); self.ingest(path) path = self.file('reject', [row]); self.ingest(path)
+118 -30
View File
@@ -45,10 +45,12 @@ class PublicOpenReviewTests(unittest.TestCase):
def test_only_explicit_decisions_and_verified_scope_become_events(self): def test_only_explicit_decisions_and_verified_scope_become_events(self):
for value in ('Pending', 'Active', 'Submitted to NeurIPS 2025', 'TBD', '', for value in ('Pending', 'Active', 'Submitted to NeurIPS 2025', 'TBD', '',
'Low score', 'ICML 2025 Retracted by Authors', 'Do not reject'): 'Low score', 'ICML 2025 Retracted by Authors', 'Do not reject',
'Workshop', 'Poster Workshop', 'Oral Workshop'):
self.assertIsNone(negative_status(value), value) self.assertIsNone(negative_status(value), value)
self.assertEqual(negative_status('Reject'), 'rejected') self.assertEqual(negative_status('Reject'), 'rejected')
self.assertEqual(negative_status('Desk rejected'), 'desk_rejected') self.assertEqual(negative_status('Desk rejected'), 'desk_rejected')
self.assertEqual(negative_status('Withdraw'), 'withdrawn')
self.assertEqual(negative_status('NeurIPS 2023 Conference Withdrawn Submission'), 'withdrawn') self.assertEqual(negative_status('NeurIPS 2023 Conference Withdrawn Submission'), 'withdrawn')
for raw, expected in [('main', 'main'), ('Position', 'position'), for raw, expected in [('main', 'main'), ('Position', 'position'),
('Datasets & Benchmarks', 'datasets_benchmarks')]: ('Datasets & Benchmarks', 'datasets_benchmarks')]:
@@ -98,6 +100,121 @@ class PublicOpenReviewTests(unittest.TestCase):
self.assertEqual(list(Path(tmp).glob('*.jsonl')), []) self.assertEqual(list(Path(tmp).glob('*.jsonl')), [])
self.assertFalse((Path(tmp) / 'public-openreview-inventory.json').exists()) self.assertFalse((Path(tmp) / 'public-openreview-inventory.json').exists())
def test_missing_title_is_held_without_losing_valid_negative_records(self):
with tempfile.TemporaryDirectory() as tmp:
result = self.collect(tmp, {'venues/iclr/iclr2017.jsonl': [
self.row(id='SJUdkecgx', title=''),
self.row(id='NoTitle001', title=None),
self.row(id='Whitespace', title=' '),
self.row(id='ValidReject'),
self.row(id='Withdraw01', status='Withdraw'),
self.row(id='Workshop01', status='Workshop'),
]}, families=['iclr'], years=[2017])
self.assertEqual(result['input_rows'], 6)
self.assertEqual(result['normalized_records'], 2)
self.assertEqual(result['source_files'][0]['excluded_or_held'],
{'missing_title': 3, 'not_explicit_negative': 1})
held_path = Path(result['held_file'])
self.assertEqual(hashlib.sha256(held_path.read_bytes()).hexdigest(),
result['held_file_sha256'])
held = [json.loads(line) for line in held_path.read_text().splitlines()]
self.assertEqual([row['id'] for row in held], ['SJUdkecgx', 'NoTitle001', 'Whitespace'])
self.assertTrue(all(row['reason'] == 'missing_title' and row['status'] == 'Reject'
for row in held))
self.assertEqual([row['provenance']['source_line'] for row in held], [1, 2, 3])
self.assertNotIn('private@example.org', held_path.read_text())
self.assertNotIn('private review', held_path.read_text())
manifest = result['files'][0]
self.assertEqual((manifest['parser_version'], manifest['status']), (3, 'partial'))
rows = [json.loads(line) for line in Path(manifest['file']).read_text().splitlines()]
self.assertEqual([(row['identifiers']['openreview'], row['status']) for row in rows],
[('ValidReject', 'rejected'), ('Withdraw01', 'withdrawn')])
for row in held:
self.assertEqual(row['provenance']['source_revision'], REVISION)
def test_nontext_title_still_fails_collection(self):
with tempfile.TemporaryDirectory() as tmp:
with self.assertRaisesRegex(ValueError, 'lacks a title'):
self.collect(tmp, {'venues/iclr/iclr2017.jsonl': [self.row(title=['invalid'])]},
families=['iclr'], years=[2017])
self.assertFalse((Path(tmp) / 'public-openreview-inventory.json').exists())
self.assertEqual(list(Path(tmp).glob('*.jsonl')), [])
def workshop_cases(self):
return [
(2024, 'workshop_me_fomo', 'ICLR 2024 Workshop MEFoMo Withdrawn Submission', 'withdrawn', 'ME-FoMo'),
(2024, 'workshop_genai4dm', 'ICLR 2024 Workshop GenAI4DM Withdrawn Submission', 'withdrawn', 'GenAI4DM'),
(2025, 'workshop_agenticai', 'ICLR 2025 Workshop AgenticAI Reject', 'rejected', 'AgenticAI'),
(2025, 'workshop_lmrl', 'ICLR 2025 Workshop LMRL Withdrawn Submission', 'withdrawn', 'LMRL'),
(2026, 'workshop_llm_reasoning', 'ICLR 2026 Workshop LLM Reasoning Withdrawn Submission', 'withdrawn', 'LLM_Reasoning'),
]
def test_iclr_workshop_labels_require_opt_in_and_retain_identity_evidence(self):
for year, track, label, status, group in self.workshop_cases():
with self.subTest(label=label):
raw = self.row(track=track, status=label)
self.assertEqual(normalize(raw, 'iclr', year, self.provenance()),
(None, 'separate_workshop'))
row, reason = normalize(raw, 'iclr', year, self.provenance(), True)
self.assertIsNone(reason)
self.assertEqual((row['venue'], row['year'], row['track'], row['status']),
('ICLR', year, track, status))
self.assertEqual(row['raw_decision'], label)
self.assertEqual(row['metadata']['workshop_venueid'],
f'ICLR.cc/{year}/Workshop/{group}')
self.assertFalse(row['metadata']['original_decision_signature_verified'])
self.assertEqual(row['evidence_url'], 'https://example.org/pinned.jsonl#L7')
self.assertNotIn('private review', json.dumps(row))
def test_workshop_label_scope_conflicts_never_become_main_events(self):
for year, track, label, _, _ in self.workshop_cases():
for enabled in (False, True):
for wrong_track in ('main', 'workshop_other'):
self.assertEqual(normalize(self.row(track=wrong_track, status=label),
'iclr', year, self.provenance(), enabled),
(None, 'conflicting_workshop_track'))
for family, wrong_year in [('icml', year), ('iclr', year + 1)]:
with self.assertRaisesRegex(ValueError, 'conference year'):
normalize(self.row(track=track, status=label), family,
wrong_year, self.provenance(), enabled)
row, reason = normalize(self.row(track='workshop_unknown',
status='ICLR 2026 Workshop Unknown Reject'),
'iclr', 2026, self.provenance(), True)
self.assertIsNone(row)
self.assertEqual(reason, 'unmapped_negative_label')
def test_workshop_collection_and_import_keep_five_tracks_separate_from_main(self):
files = {}
for index, (year, track, label, _, _) in enumerate(self.workshop_cases()):
files.setdefault(f'venues/iclr/iclr{year}.jsonl', []).append(
self.row(id=f'Workshop{index:02}', track=track, status=label))
files['venues/iclr/iclr2024.jsonl'].append(self.row())
with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
default = self.collect(root / 'default', files, families=['iclr'])
self.assertEqual(default['normalized_records'], 1)
held = [json.loads(line) for line in Path(default['held_file']).read_bytes().split(b'\n') if line]
self.assertEqual(len(held), 5)
self.assertTrue(all(row['reason'] == 'separate_workshop' for row in held))
selected = self.collect(root / 'selected', files, families=['iclr'], include_workshops=True)
self.assertEqual(selected['normalized_records'], 6)
self.assertEqual(len(selected['files']), 6)
self.assertEqual(Path(selected['held_file']).read_bytes(), b'')
db = root / 'db.sqlite'
for manifest in selected['files']:
self.assertEqual(manifest['parser_version'], 3)
ingest_file(db, manifest['file'])
store = Store(db)
try:
scopes = set(store.conn.execute('SELECT e.year,e.track,d.status FROM submissions s '
'JOIN editions e ON e.id=s.edition_id '
'JOIN decisions d ON d.submission_id=s.id'))
expected = {(year, track, status) for year, track, _, status, _ in self.workshop_cases()}
self.assertEqual(scopes, expected | {(2024, 'main', 'rejected')})
self.assertEqual(store.conn.execute('PRAGMA foreign_key_check').fetchall(), [])
finally:
store.conn.close()
def test_mirror_reimport_preserves_one_attempt_and_later_acceptance_elsewhere(self): def test_mirror_reimport_preserves_one_attempt_and_later_acceptance_elsewhere(self):
with tempfile.TemporaryDirectory() as tmp: with tempfile.TemporaryDirectory() as tmp:
root = Path(tmp) root = Path(tmp)
@@ -152,35 +269,6 @@ class PublicOpenReviewTests(unittest.TestCase):
finally: finally:
store.conn.close() store.conn.close()
def test_unicode_separators_in_abstract_survive_audit_and_import(self):
for separator in ('\u0085', '\u2028', '\u2029'):
with self.subTest(separator=repr(separator)), tempfile.TemporaryDirectory() as tmp:
root = Path(tmp)
abstract = 'First paragraph' + separator + 'Second paragraph'
result = self.collect(root / 'source', {
'venues/icml/icml2025.jsonl': [self.row(abstract=abstract)]})
path = Path(result['files'][0]['file'])
data = path.read_bytes()
self.assertIn(separator.encode(), data)
self.assertEqual(data.count(b'\n'), 1)
db = root / 'db.sqlite'
store = Store(db)
store.conn.close()
inventory = root / 'source/public-openreview-inventory.json'
before = audit(db, inventory, root / 'before.json')
self.assertEqual(before['status'], 'ready_for_serial_import')
self.assertEqual(before['records_checked'], 1)
ingest_file(db, path)
after = audit(db, inventory, root / 'after.json')
self.assertEqual(after['status'], 'ready_for_serial_import')
self.assertEqual(after['existing_same_edition_attempts'], 1)
store = Store(db)
try:
self.assertEqual(store.conn.execute(
'SELECT abstract FROM source_records').fetchone()[0], abstract)
finally:
store.conn.close()
if __name__ == '__main__': if __name__ == '__main__':
unittest.main() unittest.main()